mRNA_L-elsbetiae_contig20453.6163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20453.6163.1
Unique NamemRNA_L-elsbetiae_contig20453.6163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20453.6163.1 vs. uniprot
Match: D8LQZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ7_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.350e-42
Identity = 76/90 (84.44%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:  268 SPWEIELAKASGAWEGPGAVADTKERCRQWCMIAKASLQAEDKEREKDKKRG--KLVGGTARHQRLRQLVEAAELNSSFFLVPGLNDKQV 531
            SPWE+ELAKA+G WEG G V D KERCRQWCMIAKASLQAE+KEREKD +RG  KL GGTARHQRLRQLV+AAELNSSFFLVPGLNDKQV
Sbjct:   89 SPWEMELAKAAGTWEGTGGVGDEKERCRQWCMIAKASLQAEEKEREKDNRRGEGKLTGGTARHQRLRQLVDAAELNSSFFLVPGLNDKQV 178
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BLAST of mRNA_L-elsbetiae_contig20453.6163.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.510e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:  268 SPWEIELAKASGAWEGPGAVADTKERCRQWCMIAKASLQAEDKEREKDKKRG 423
            SPWE+ELAKA+G WEGPG V D KERCRQWCMIAKASLQAE+KEREKDK+RG
Sbjct:  557 SPWEMELAKAAGTWEGPGGVGDEKERCRQWCMIAKASLQAEEKEREKDKRRG 608
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20453.6163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQZ7_ECTSI2.350e-4284.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L231_9PHAE2.510e-2084.62Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20453contigL-elsbetiae_contig20453:182..1895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002240.1
Exons2
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.8202343-CDS-L-elsbetiae_contig20453:181..2861622815843.8202343-CDS-L-elsbetiae_contig20453:181..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20453 182..286 -
1691683140.6300771-CDS-L-elsbetiae_contig20453:181..2861691683140.6300771-CDS-L-elsbetiae_contig20453:181..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20453 182..286 -
1622815843.8315773-CDS-L-elsbetiae_contig20453:1469..18951622815843.8315773-CDS-L-elsbetiae_contig20453:1469..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20453 1470..1895 -
1691683140.6391292-CDS-L-elsbetiae_contig20453:1469..18951691683140.6391292-CDS-L-elsbetiae_contig20453:1469..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20453 1470..1895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20453.6163.1prot_L-elsbetiae_contig20453.6163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20453 182..1895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20453.6163.1

>prot_L-elsbetiae_contig20453.6163.1 ID=prot_L-elsbetiae_contig20453.6163.1|Name=mRNA_L-elsbetiae_contig20453.6163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
FAPPPPPPPLPAFGGAGGPAPETSGQNGSQNGGGVGGAPPAPPVPPGSAP
LPPLPPPPPQHQEQQQEQQGQQQQQQQQQQQQQQPAAPLSPWEIELAKAS
GAWEGPGAVADTKERCRQWCMIAKASLQAEDKEREKDKKRGKLVGGTARH
QRLRQLVEAAELNSSFFLVPGLNDKQV
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mRNA from alignment at L-elsbetiae_contig20453:182..1895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20453.6163.1 ID=mRNA_L-elsbetiae_contig20453.6163.1|Name=mRNA_L-elsbetiae_contig20453.6163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1714bp|location=Sequence derived from alignment at L-elsbetiae_contig20453:182..1895- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCGCCGCCGCCGCCACCGCCGCCTCTTCCGGCCTTCGGTGGCGCGGG
GGGACCTGCTCCCGAGACCTCGGGGCAAAACGGGTCGCAGAACGGCGGAG
GGGTCGGGGGGGCGCCGCCGGCGCCGCCGGTGCCGCCGGGGTCCGCTCCC
CTCCCGCCGCTGCCCCCGCCGCCGCCGCAACATCAGGAGCAGCAGCAGGA
GCAGCAGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACCGGCCGCGCCGCTATCGCCGTGGGAGATCGAGCTGGCTAAGGCCTCC
GGGGCGTGGGAGGGTCCCGGAGCGGTCGCGGACACCAAGGAGCGGTGTCG
GCAGTGGTGCATGATCGCCAAGGCGTCGCTGCAGGCGGAGGACAAGGAGC
GCGAGAAGGACAAGAAGCGAGGGAAGGTACGCAACACTTTTGCCGAGGTG
CAGTTAGTTGGGTTGTCAGCTCGTCAGCTTGTGCGCTACAGTTAATACAC
AAAGGCAAGAACAGCGGCGGCACAAGCGTGTGTATGTGCACGTGCATTTG
TGTACGTGTGTACGTGTGTGCATGTTTTCGGGCCTCATTCGACCGTTTCT
TGTTTTTTTCACTCATCAAACCTGTTTTTAGTTGGAAATCTTGAACCGTC
GGGCCACTCCGTGTCTCGGCATCAAGGTTGTGGGCGACGGGTTGGACGGT
GCGTGGGGGCTTATACATCTGTTCGTCTTGTTGTTTGTGTTGCCGTTCCC
ATATTGAATTTTCGTGAGGGATGTTCGCGTCTCCCCAAACAGCAGTCATT
GCGTTAGTCGCGACACCCTGAGACCGCGTATTTTCATTGAGCCAAAAAAA
AACACCTATATATATAATATATATAGATATAGACTATATATATCACCGGC
CAGCTGATTTCCTTCGGCGGACTCAAGGCCCCGTGTTCCCCCGTCTGTCA
TCTTTCTTACTGCGAACCCTGTGCTTCCAAGTTCCATGTATCCATGGATG
GCATTTTTTTTCTTTGGCGGACTGTCTGGCGTGTCAAGGCCTTATATTTC
CGTCTGTCATACATACATATTAGTTTCAACCCTATACTTCTAAGTGTATG
TGTGTGTGTGTGTGTGTGTCCTTCTCATTTATTTTGGCGACAGTCCCCCC
AAGTGGAGACGTGTAGTACATCTTGCGGAACTACACTTTGCAACGCATTT
GTATGTACAACTAGAACCAACTGGGTCACACAGGAGGGGGCGAACGCTGG
GGCTTTTTCTCCTTTTTTATTTTATTTTTTTGCTCCACCTTCCTCCTGCA
CTGCTTGTCTTCATTTTTATCGCGAGAAGGGTTCGGCTGTCCTTTTCGCT
CGTCAACGTGAATACGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTAA
ATCGCTTTCACCTGCAAAGTCGCCAAATAAACACTTCTGCTTGGGATTGA
ACTCCAGACGTTGCTGCTAGTGGGTTCGAAGTTAAACCACTAGACCACCG
GGGCGACCGGTATATATATGTATGTATAGATGTGACATTTGTTTTATTCA
TTCTGACGGACTGTCTGGCGTGTGCGCGCGCGTGCGTCACTTCACCCTAC
ATAATGCAGTTGGTGGGGGGAACTGCGAGGCACCAGCGGCTGCGGCAGCT
TGTGGAGGCCGCGGAGCTGAACTCGTCGTTCTTCCTGGTGCCGGGGCTTA
ACGACAAGCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20453:182..1895-

>mRNA_L-elsbetiae_contig20453.6163.1 ID=mRNA_L-elsbetiae_contig20453.6163.1|Name=mRNA_L-elsbetiae_contig20453.6163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig20453:182..1895- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCGCCGCCGCCGCCACCGCCGCCTCTTCCGGCCTTCGGTGGCGCGGG
GGGACCTGCTCCCGAGACCTCGGGGCAAAACGGGTCGCAGAACGGCGGAG
GGGTCGGGGGGGCGCCGCCGGCGCCGCCGGTGCCGCCGGGGTCCGCTCCC
CTCCCGCCGCTGCCCCCGCCGCCGCCGCAACATCAGGAGCAGCAGCAGGA
GCAGCAGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACCGGCCGCGCCGCTATCGCCGTGGGAGATCGAGCTGGCTAAGGCCTCC
GGGGCGTGGGAGGGTCCCGGAGCGGTCGCGGACACCAAGGAGCGGTGTCG
GCAGTGGTGCATGATCGCCAAGGCGTCGCTGCAGGCGGAGGACAAGGAGC
GCGAGAAGGACAAGAAGCGAGGGAAGTTTGCGCCGCCGCCGCCACCGCCG
CCTCTTCCGGCCTTCGGTGGCGCGGGGGGACCTGCTCCCGAGACCTCGGG
GCAAAACGGGTCGCAGAACGGCGGAGGGGTCGGGGGGGCGCCGCCGGCGC
CGCCGGTGCCGCCGGGGTCCGCTCCCCTCCCGCCGCTGCCCCCGCCGCCG
CCGCAACATCAGGAGCAGCAGCAGGAGCAGCAGGGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACCGGCCGCGCCGCTATCGCCGT
GGGAGATCGAGCTGGCTAAGGCCTCCGGGGCGTGGGAGGGTCCCGGAGCG
GTCGCGGACACCAAGGAGCGGTGTCGGCAGTGGTGCATGATCGCCAAGGC
GTCGCTGCAGGCGGAGGACAAGGAGCGCGAGAAGGACAAGAAGCGAGGGA
AGTTGGTGGGGGGAACTGCGAGGCACCAGCGGCTGCGGCAGCTTGTGGAG
GCCGCGGAGCTGAACTCGTCGTTCTTCCTGGTGCCGGGGCTTAACGACAA
GCAGGTGTTGGTGGGGGGAACTGCGAGGCACCAGCGGCTGCGGCAGCTTG
TGGAGGCCGCGGAGCTGAACTCGTCGTTCTTCCTGGTGCCGGGGCTTAAC
GACAAGCAGGTG
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