mRNA_L-elsbetiae_contig20450.6162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20450.6162.1
Unique NamemRNA_L-elsbetiae_contig20450.6162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig20450.6162.1 vs. uniprot
Match: W6Q5D8_PENRF (Carbohydrate-binding WSC n=2 Tax=Penicillium roqueforti TaxID=5082 RepID=W6Q5D8_PENRF)

HSP 1 Score: 53.1 bits (126), Expect = 5.230e-7
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 ALAEGSACYCGNPQPVDEER---GICEEPCAGDVSSMCGGVNSYDLYEIADNSLP 156
            AL+ G+ CYCGN  P D  +     C+ PCAG  +  CGG ++++L + A+N  P
Sbjct:   61 ALSRGNMCYCGNEMPPDSAKIADSKCDVPCAGWPAGSCGGADTFNLIQAAENLQP 115
[Close]
BLAST of mRNA_L-elsbetiae_contig20450.6162.1 vs. uniprot
Match: A0A086TF94_ACRC1 (Galactose oxidase-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086TF94_ACRC1)

HSP 1 Score: 51.2 bits (121), Expect = 4.360e-6
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 ALAEGSACYCGNPQPVDE------ERGICEEPCAGDVSSMCGGVNSYDLY 132
            A+  G+ CYCG+P  +D       + G+C+ PCAG+ ++MCGG +S   Y
Sbjct:   68 AMGHGNICYCGDPANIDTAGAKFVDEGLCDIPCAGNGTAMCGGGSSLSTY 117
[Close]
BLAST of mRNA_L-elsbetiae_contig20450.6162.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 3.070e-5
Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = 1 
Query:    1 ALAEGSACYCGNPQPV----DEERGICEEPCAGDVSSMCGGVNSYDLYEIA 141
            A+  G  C C          D + G+C+ PC GD S  CGGV+S+D+Y+++
Sbjct:  139 AVTRGDLCTCFTEADTGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQLS 189
[Close]
BLAST of mRNA_L-elsbetiae_contig20450.6162.1 vs. uniprot
Match: A0A8K0TT44_9PEZI (WSC domain-containing protein n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TT44_9PEZI)

HSP 1 Score: 47.4 bits (111), Expect = 1.000e-4
Identity = 21/43 (48.84%), Postives = 23/43 (53.49%), Query Frame = 1 
Query:   22 CYCGNP-----QPVDEERGICEEPCAGDVSSMCGGVNSYDLYE 135
            CYCGN       PV    G+CE PC GD S +CGG     LYE
Sbjct:  409 CYCGNDVAADRAPVKGILGVCEMPCKGDNSQICGGYGGLSLYE 451
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20450.6162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
W6Q5D8_PENRF5.230e-740.00Carbohydrate-binding WSC n=2 Tax=Penicillium roque... [more]
A0A086TF94_ACRC14.360e-640.00Galactose oxidase-like protein n=1 Tax=Acremonium ... [more]
A0A6H5KL41_9PHAE3.070e-537.25WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8K0TT44_9PEZI1.000e-448.84WSC domain-containing protein n=1 Tax=Plectosphaer... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20450contigL-elsbetiae_contig20450:2242..2397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.7837942-CDS-L-elsbetiae_contig20450:2241..23971622815843.7837942-CDS-L-elsbetiae_contig20450:2241..2397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20450 2242..2397 -
1691683140.6207902-CDS-L-elsbetiae_contig20450:2241..23971691683140.6207902-CDS-L-elsbetiae_contig20450:2241..2397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20450 2242..2397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20450.6162.1prot_L-elsbetiae_contig20450.6162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20450 2242..2397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20450.6162.1

>prot_L-elsbetiae_contig20450.6162.1 ID=prot_L-elsbetiae_contig20450.6162.1|Name=mRNA_L-elsbetiae_contig20450.6162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
ALAEGSACYCGNPQPVDEERGICEEPCAGDVSSMCGGVNSYDLYEIADNS
LP
back to top

mRNA from alignment at L-elsbetiae_contig20450:2242..2397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20450.6162.1 ID=mRNA_L-elsbetiae_contig20450.6162.1|Name=mRNA_L-elsbetiae_contig20450.6162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig20450:2242..2397- (Laminarionema elsbetiae ELsaHSoW15)
GCACTTGCTGAAGGAAGTGCCTGCTATTGCGGGAACCCCCAACCCGTCGA
TGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTATCCTCGA
TGTGCGGAGGTGTCAACTCGTACGACCTGTACGAGATAGCCGATAATTCC
TTGCCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20450:2242..2397-

>mRNA_L-elsbetiae_contig20450.6162.1 ID=mRNA_L-elsbetiae_contig20450.6162.1|Name=mRNA_L-elsbetiae_contig20450.6162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig20450:2242..2397- (Laminarionema elsbetiae ELsaHSoW15)
GCACTTGCTGAAGGAAGTGCCTGCTATTGCGGGAACCCCCAACCCGTCGA
TGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTATCCTCGA
TGTGCGGAGGTGTCAACTCGTACGACCTGTACGAGATAGCCGATAATTCC
TTGCCAGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGGAACCCCCAACC
CGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTAT
CCTCGATGTGCGGAGGTGTCAACTCGTACGACCTGTACGAGATAGCCGAT
AATTCCTTGCCA
back to top