mRNA_L-elsbetiae_contig20419.6150.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20419.6150.1
Unique NamemRNA_L-elsbetiae_contig20419.6150.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20419.6150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20419contigL-elsbetiae_contig20419:1915..2344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20419.6150.1prot_L-elsbetiae_contig20419.6150.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20419 2027..2335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.7570834-UTR-L-elsbetiae_contig20419:1914..20261622815842.7570834-UTR-L-elsbetiae_contig20419:1914..2026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20419 1915..2026 +
1691683139.930335-UTR-L-elsbetiae_contig20419:1914..20261691683139.930335-UTR-L-elsbetiae_contig20419:1914..2026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20419 1915..2026 +
1622815842.778153-UTR-L-elsbetiae_contig20419:2335..23441622815842.778153-UTR-L-elsbetiae_contig20419:2335..2344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20419 2336..2344 +
1691683139.9567919-UTR-L-elsbetiae_contig20419:2335..23441691683139.9567919-UTR-L-elsbetiae_contig20419:2335..2344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20419 2336..2344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.7678926-CDS-L-elsbetiae_contig20419:2026..23351622815842.7678926-CDS-L-elsbetiae_contig20419:2026..2335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20419 2027..2335 +
1691683139.948345-CDS-L-elsbetiae_contig20419:2026..23351691683139.948345-CDS-L-elsbetiae_contig20419:2026..2335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20419 2027..2335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20419.6150.1

>prot_L-elsbetiae_contig20419.6150.1 ID=prot_L-elsbetiae_contig20419.6150.1|Name=mRNA_L-elsbetiae_contig20419.6150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MQLGREKPKPTASKKKNLHRPRGYQEENSGHVGRDKTQGKNRRRKVGQKK
KIQKEEKAPVFTSSCVIPVGSSCTDKYTAKCSTSKCTARCSTRLHLGVLS
PK*
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mRNA from alignment at L-elsbetiae_contig20419:1915..2344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20419.6150.1 ID=mRNA_L-elsbetiae_contig20419.6150.1|Name=mRNA_L-elsbetiae_contig20419.6150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=430bp|location=Sequence derived from alignment at L-elsbetiae_contig20419:1915..2344+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAATAATGTGTATGATTGCTCCTTCGGCACATACATAAATACGCGTA
CCCAAAAGGTCTATTGTAGATACTTCTCGTTGGTGCAGAATCAAACAGAG
TTGGGTAGGTACATGCAACTCGGAAGAGAGAAACCTAAACCTACCGCTTC
AAAAAAGAAAAATCTACATAGACCAAGGGGCTATCAGGAGGAAAATTCTG
GACATGTAGGTCGCGATAAAACCCAAGGCAAGAACCGCAGGAGGAAGGTG
GGGCAAAAAAAGAAAATACAAAAAGAAGAAAAAGCCCCAGTGTTCACCTC
CTCCTGTGTGATCCCGGTTGGTTCTAGTTGTACAGATAAATACACTGCAA
AGTGTAGTACCTCTAAGTGCACCGCAAGGTGTAGTACACGTCTCCACTTG
GGGGTACTGTCGCCAAAATAAATGGGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20419:1915..2344+

>mRNA_L-elsbetiae_contig20419.6150.1 ID=mRNA_L-elsbetiae_contig20419.6150.1|Name=mRNA_L-elsbetiae_contig20419.6150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig20419:1915..2344+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACTCGGAAGAGAGAAACCTAAACCTACCGCTTCAAAAAAGAAAAA
TCTACATAGACCAAGGGGCTATCAGGAGGAAAATTCTGGACATGTAGGTC
GCGATAAAACCCAAGGCAAGAACCGCAGGAGGAAGGTGGGGCAAAAAAAG
AAAATACAAAAAGAAGAAAAAGCCCCAGTGTTCACCTCCTCCTGTGTGAT
CCCGGTTGGTTCTAGTTGTACAGATAAATACACTGCAAAGTGTAGTACCT
CTAAGTGCACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGTACTGTCG
CCAAAATAAATGCAACTCGGAAGAGAGAAACCTAAACCTACCGCTTCAAA
AAAGAAAAATCTACATAGACCAAGGGGCTATCAGGAGGAAAATTCTGGAC
ATGTAGGTCGCGATAAAACCCAAGGCAAGAACCGCAGGAGGAAGGTGGGG
CAAAAAAAGAAAATACAAAAAGAAGAAAAAGCCCCAGTGTTCACCTCCTC
CTGTGTGATCCCGGTTGGTTCTAGTTGTACAGATAAATACACTGCAAAGT
GTAGTACCTCTAAGTGCACCGCAAGGTGTAGTACACGTCTCCACTTGGGG
GTACTGTCGCCAAAATAA
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