mRNA_L-elsbetiae_contig204.6141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig204.6141.1 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI) HSP 1 Score: 247 bits (631), Expect = 7.950e-71 Identity = 169/338 (50.00%), Postives = 193/338 (57.10%), Query Frame = 1 Query: 382 VSNECRLRRELRKLGQRHKPQNVLDFLVAAKARGDPLSLRVFNSAIIAVAPCEEGCRYALRILVLMQEEEIAPDRFALTAIVASCLRSQKWDVAYGVLQKMQHQGMVPLDMSPSRFATVPGEPGEARDRVLRMLQRLGSA-----EGVRSPPSLFSPEQRAGDHCVSGGGXXXGIAGRISRQSGEEIVGRIRSSAAGTGGAGPSKVKSRDRGA-------AAGEHAGEAV-------------------------------------------------SP--------NAGGGEETVGELLAAGIRPREEAFLSELKGAASTKSWERALKLLDGLRE 1188 VS ECRLRRELRKLG +PQNVL+ L AAK RGDPLSLRVFN+AI AVAPCEEGC++ALR+L+LMQEE IAPDRF LTAIVASCLR QKWDVA+GVL+KM+ QGM PLD+ PSR T PGE GEARDRV R+L+RL SA EG+R P L R G G XXX R RQ + V R+ S G GG G ++ RG AA AG AV SP +A G++ VG LL A P E+ FLSELK AA+TKSWERAL LLDG+RE Sbjct: 48 VSAECRLRRELRKLGNLRQPQNVLELLAAAKGRGDPLSLRVFNAAITAVAPCEEGCKFALRLLILMQEERIAPDRFTLTAIVASCLRCQKWDVAHGVLEKMELQGMRPLDLRPSRLTTAPGEAGEARDRVRRLLERLRSADLGPEEGLRPPDQL-----RKG-----GXXXXXDFTVRDFRQRRVKSVVRVTS---GKGGKGARPSENNSRGTFRHVGTTAASSPAGSAVLVEVPPKALSSFRMENCKFQSTSCRRFSENILPPLREAYLKETSKNLTSSPTFSNAVASSAADGDDKVGVLLTAETPPGEKFFLSELKAAANTKSWERALNLLDGMRE 372 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig204.6141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig204.6141.1 >prot_L-elsbetiae_contig204.6141.1 ID=prot_L-elsbetiae_contig204.6141.1|Name=mRNA_L-elsbetiae_contig204.6141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=483bp MARGTRKTFKRAVPLTFFAIPAAGGALAFGLPPSCARDGTTSSLSAALQGback to top mRNA from alignment at L-elsbetiae_contig204:46489..50404+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig204.6141.1 ID=mRNA_L-elsbetiae_contig204.6141.1|Name=mRNA_L-elsbetiae_contig204.6141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3916bp|location=Sequence derived from alignment at L-elsbetiae_contig204:46489..50404+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig204:46489..50404+ >mRNA_L-elsbetiae_contig204.6141.1 ID=mRNA_L-elsbetiae_contig204.6141.1|Name=mRNA_L-elsbetiae_contig204.6141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2898bp|location=Sequence derived from alignment at L-elsbetiae_contig204:46489..50404+ (Laminarionema elsbetiae ELsaHSoW15)back to top |