mRNA_L-elsbetiae_contig204.6140.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig204.6140.1
Unique NamemRNA_L-elsbetiae_contig204.6140.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig204.6140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig204contigL-elsbetiae_contig204:45855..46272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig204.6140.1prot_L-elsbetiae_contig204.6140.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig204 45865..46209 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815841.3622365-UTR-L-elsbetiae_contig204:45854..458641622815841.3622365-UTR-L-elsbetiae_contig204:45854..45864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig204 45855..45864 +
1691683138.933381-UTR-L-elsbetiae_contig204:45854..458641691683138.933381-UTR-L-elsbetiae_contig204:45854..45864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig204 45855..45864 +
1622815841.3832998-UTR-L-elsbetiae_contig204:46209..462721622815841.3832998-UTR-L-elsbetiae_contig204:46209..46272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig204 46210..46272 +
1691683138.9546778-UTR-L-elsbetiae_contig204:46209..462721691683138.9546778-UTR-L-elsbetiae_contig204:46209..46272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig204 46210..46272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815841.373115-CDS-L-elsbetiae_contig204:45864..462091622815841.373115-CDS-L-elsbetiae_contig204:45864..46209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig204 45865..46209 +
1691683138.9463136-CDS-L-elsbetiae_contig204:45864..462091691683138.9463136-CDS-L-elsbetiae_contig204:45864..46209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig204 45865..46209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig204.6140.1

>prot_L-elsbetiae_contig204.6140.1 ID=prot_L-elsbetiae_contig204.6140.1|Name=mRNA_L-elsbetiae_contig204.6140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MVLTVDIRHHSIERGRKIKHQKNGRVHDSSQHGSRLLCWECPPRQKGRHA
SYVATLTCPADDALKGGIGVPFIPVHRPQQPPTSRCEWISRREGCWSAGS
ILVTPNFLYGVKTM*
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mRNA from alignment at L-elsbetiae_contig204:45855..46272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig204.6140.1 ID=mRNA_L-elsbetiae_contig204.6140.1|Name=mRNA_L-elsbetiae_contig204.6140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=418bp|location=Sequence derived from alignment at L-elsbetiae_contig204:45855..46272+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGGCGTCGATGGTTCTTACGGTCGATATCCGCCATCATTCTATAGAGA
GAGGGCGCAAGATAAAGCACCAAAAGAATGGAAGAGTTCACGATTCGTCC
CAGCACGGCAGTCGCCTCCTCTGCTGGGAGTGTCCACCGCGCCAAAAAGG
TAGACACGCAAGCTATGTAGCGACGCTCACATGTCCCGCCGATGATGCAT
TGAAAGGTGGCATCGGCGTCCCATTTATACCGGTTCATCGACCGCAGCAA
CCCCCTACCTCCCGATGTGAATGGATTTCCCGGAGGGAAGGCTGCTGGTC
TGCTGGCAGCATCTTGGTCACGCCCAACTTCTTATACGGAGTAAAGACTA
TGTAAATCCATTGACAGCACTTGCACGCACACACAGCAAATGCGCGGCTA
GCTCACTATTTCCTTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig204:45855..46272+

>mRNA_L-elsbetiae_contig204.6140.1 ID=mRNA_L-elsbetiae_contig204.6140.1|Name=mRNA_L-elsbetiae_contig204.6140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig204:45855..46272+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCTTACGGTCGATATCCGCCATCATTCTATAGAGAGAGGGCGCAA
GATAAAGCACCAAAAGAATGGAAGAGTTCACGATTCGTCCCAGCACGGCA
GTCGCCTCCTCTGCTGGGAGTGTCCACCGCGCCAAAAAGGTAGACACGCA
AGCTATGTAGCGACGCTCACATGTCCCGCCGATGATGCATTGAAAGGTGG
CATCGGCGTCCCATTTATACCGGTTCATCGACCGCAGCAACCCCCTACCT
CCCGATGTGAATGGATTTCCCGGAGGGAAGGCTGCTGGTCTGCTGGCAGC
ATCTTGGTCACGCCCAACTTCTTATACGGAGTAAAGACTATGTAAATGGT
TCTTACGGTCGATATCCGCCATCATTCTATAGAGAGAGGGCGCAAGATAA
AGCACCAAAAGAATGGAAGAGTTCACGATTCGTCCCAGCACGGCAGTCGC
CTCCTCTGCTGGGAGTGTCCACCGCGCCAAAAAGGTAGACACGCAAGCTA
TGTAGCGACGCTCACATGTCCCGCCGATGATGCATTGAAAGGTGGCATCG
GCGTCCCATTTATACCGGTTCATCGACCGCAGCAACCCCCTACCTCCCGA
TGTGAATGGATTTCCCGGAGGGAAGGCTGCTGGTCTGCTGGCAGCATCTT
GGTCACGCCCAACTTCTTATACGGAGTAAAGACTATGTAA
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