mRNA_L-elsbetiae_contig204.6136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig204.6136.1 vs. uniprot
Match: A0A6H5J5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5B3_9PHAE) HSP 1 Score: 570 bits (1468), Expect = 8.710e-177 Identity = 502/1172 (42.83%), Postives = 626/1172 (53.41%), Query Frame = 1
Query: 466 GGNRKRINVSIVPLGSLEEGPSIGSGSTNTGGASGEPATVKSSRILPVRSAPVSWRPLAATS--SSGVLSRNGSKRVSQVHEKYVQHRKTHKQKMVDATASVATGGVAEGVAATVAGGWGSAVTQSNANGTVDDARAGHDGEERKPHSLLAESRLGYPSIADTCGGIVLRLTPGERSLEPWGTTLAPLRAMCDIEPSLSRAGIEYRGVIHAVEGAQELKSHHQIKQKKARHAKGLLGKDIRPRTSEPRLLIVTLRRLTRRLRRHCSKLQDFLRQDIKFRWRFEKPPPEVLVCATQAVRKTIHTEQQELRVVLAHLRAISFDTVKAISEWRATFETSKGPGYRRISRNVSASSL-HCKPSLPRCPAELQGTSLCSSIAC-------HSG---KYSDK-----VDGHRHDH-ANVTGMATPAGGVRVDQEKGCETEAQNRNGLSLRGGNNDETARPNTVSGQAINSLPMIFIWKGHNYLVKMAHDLDFLDDESEAAPVPTWLGFSVHGNPFLIPPEGHDICDILLRGREERRKGIAARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------LPATSSHRLSGQGHESESDRRHGSKTWGGVVPPESTEISQHQHHQPMPPNADPKATKRGLPQRAGS-TANMAPAMALPGEEGGET---------FVTGG------GMIMTDGSFGSATTSVDPPPL-WGLGDFRDED-IPCELSSGEEEEVQWNGGMYLDDPIIPCLPEVVRSKASAAAETLRSEDAARRYMESSALEIVANVKRTQEILHQSNQELSSKVEWLSEKSCRNGLRGALVDRHVGATRLKSAAS-----------ASCRRDE----PLVRRVSTAPARGVGPAQRAQSFCAGWAIAK-RPTSTQEGGAHRSAAFGT-------SRGGVCVSVDGRAENGDDERTQDDHETLTPAGLHRLASGSASSTSRRGGASASRLRRRPYRAS------------------AGTSEGRS-TGSTSATSLAERSMAASSSLQAXXXXXXXXXXXXXVAIRPTAMRRPFCPKSG-RIIITDPGKSPEIRRKAAIVIQAAFLAVCARRSVRQLRDHRECAALLIGRNWRRSRVRLRMWNAKRSRRAEELRQVADGRTRNRAAHVLQTFFRDIKYRRKRDRD 3702
GG+ R+ SI P SL++G S+G ST+ SG A S RI PVRSAPV WRP AA + SS AEG A +AG W ++ +A D AG G KP S+ +S + YP I D G + LRL P ERSLEPWGT LAP+RAMCDI+PSLSRAGI YR VIHAVEGAQ++K+ H+ K +G+ PRL IVTL+RL RRLRR C KLQ+ LR + KFRW + KPPPEV VC T + RKT+ +EQQELRVVLAHLRAISFDTVKA+ EWR TF S PGYRR+ + SA L + P AE Q + C H G K+S + +D + H A + + G V E + N L+ A P G+ + +F+WKG+NYL KMAHDL+FLDD +APV WLGFSV NPFLIPP G ++C+ L R REERR+ A R XXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX LP S + QG + +SD + G PE ++ Q Q PP AD A G +++GS T N+ FVT G +GS SA+TSV+ P GLG DE+ IP +LS+ EEEE+QW GG LD PI+P L E VRSKA AAA+ LRSE A+ + + SSA I++N +RT+EILH ++ S ++E L+E+S R LRGALVDRHVGATRLK S +SC R+E P VR VSTAPARG G C+G A A+ R + + G SAAFG+ SRGGV VSVDG E D + P+ + + T+ R + +R P +S GT+EG + T + SA S +RS SSSLQA + +RPTA RRPFC G R+II DPG S ++RR+AA IQ+A LA+CARR VR LRD R+ A LI + M A+R RRAE LR+VA+ R+RNRA HV+QTFFRD++YRR+R R+
Sbjct: 54 GGSNTRVKFSIGPTVSLDDGSSLGPSSTSLCETSGSFAVASSLRIPPVRSAPVPWRPRAAINAKSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAEGDA--LAGRW---ISPRDAGENGDLCTAGSAGNAHKPPSV--QSSVVYPRIPDAHGWVSLRLNPAERSLEPWGTALAPMRAMCDIDPSLSRAGIVYRNVIHAVEGAQKMKTCHKAK----------VGQQW------PRL-IVTLKRLIRRLRRRCGKLQELLRWEAKFRWHYGKPPPEVGVCTTSSTRKTLLSEQQELRVVLAHLRAISFDTVKAVCEWRTTFLGSGKPGYRRMHPSESAPGLPNGMTRFPEPLAEFQEHDHGIGVVCREDQEGHHQGNRQKHSQRGHPWFIDASQEGHQAGLKRRGSEDGSVHHHDPHDLRDEVDD-NALTR------SIAVPRPFGGKNDSGPAPLFLWKGNNYLTKMAHDLEFLDDADASAPVSAWLGFSVRDNPFLIPPNGLNVCEDLRRQREERREEAAVPRRXXXXHKRSPGTGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSAPLPRRQSKQERKQGRDPDSDIK------GSDARPEPMVLTPQQ--QSAPPTADADANDEGRKRKSGSATENVVTTSXXXXXXXXXXXXXXXXXGIFVTEGVARSAFSTAAAEGSLRSASTSVESPLFPAGLGYSNDENTIPYQLSTDEEEELQWAGGGRLDQPIVPELHESVRSKALAAAKVLRSEAASEQALTSSARAILSNARRTEEILHTPERDCSFRMESLAERSVREELRGALVDRHVGATRLKLLPSLLKSSCAMMRMSSCWREEKERPPFVRSVSTAPARGGG-RPGLTVVCSGTAAARGRAGAARLGHGRASAAFGSRGGGGGSSRGGVRVSVDGHHEATDGAIAGAGKRSSDPSRCTQSVPRDGNITNNR----IEKGKRAPLPSSRSQCLESGTGSQTHTTRLGGTNEGTADTAAVSAASPGDRSTT-SSSLQASSSTMSARARAKALTVRPTARRRPFCRNGGCRVIIPDPGVSADVRRRAAARIQSALLALCARRYVRGLRDDRDRAVRLIWXXXXXXXTKADMRTARRLRRAEGLRRVAEERSRNRATHVIQTFFRDVRYRRERVRE 1180
BLAST of mRNA_L-elsbetiae_contig204.6136.1 vs. uniprot
Match: D8LE39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE39_ECTSI) HSP 1 Score: 550 bits (1417), Expect = 1.930e-170 Identity = 519/1113 (46.63%), Postives = 648/1113 (58.22%), Query Frame = 1
Query: 1075 RGVIHAVEGAQELKSHHQIKQKKARHAKGLLGKDIRPRTSEPRLLIVTLRRLTRRLRRHCSKLQDFLRQDIKFRWRFEKPPPEVLVCATQAVRKTIHTEQQELRVVLAHLRAISFDTVKAISEWRATFETSKGPGYRRISRNVSASSLHCKPSLPR---CPAELQGTSLCSSIACHSGKYSDKVDGH--RHDHANVTGM--ATPAGGVRVDQEKGCETEAQNRNGLSLRGGNNDETARPNTVS------GQAINSLPMIFIWKGHNYLVKMAHDLDFLDDESEAAPVPTWLGFSVHGNPFLIPPEGHDICDILLRGREERRK------------------GIAARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPATSSHRLSGQGHESESDRRHGSKTWGGVVPPESTEISQHQHHQPMPPNADPKATKRGLPQRAGS-TANM---APAMALPGEE------GGETFVTGG-------GMIMTDGSFGSATTSVDPPPLW-GLGDFRDED-IPCELSSGEEEEVQWNGGMYLDDPIIPCLPEVVRSKASAAAETLRSEDAARRYMESSALEIVANVKRTQEILHQSNQELSSKVEWLSEKSCRNGLRGALVDRHVGATRLK-------------SAASASCRRDE--PLVRRVSTAPARGVGPAQRAQSFCAGWAIAKRPTSTQEGGAHRS-AAFGT-------SRGGVCVSVDGRAE---------------------------NGDDERTQDDHETLTPAGLHR-LASGSASSTSRRGGASASRLRRRPYRASAGTSEGRSTGSTSATSLA---ERSMAASSSLQAXXXXXXXXXXXXXVAIRPTAMRRPFCPKSG-RIIITDPGKSPEIRRKAAIVIQAAFLAVCARRSVRQLRDHRECAALLIGRNWRRSRVRLRMWNAKRSRRAEELRQVADGRTRNRAAHVLQTFFRDIKYRRKRDRDALSLK-NRDRLASELREQNAAVIVQVTIRRCIASSQVKRMRHRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIMRIRRCCLTSIVFGQKRRSLRPDEAATRVQAWFRGVSCRRTTAAAALRA 4095
R VIHAVEGAQ++K+ H+ K +K R A+ LLG+D+RPRTSEPR LIVTL+RL RRLRR C KLQ+ LR + KFRW + K PPEV VC+T++ RKT+ +EQQELRVVLAHLRA+SFDTVKA+SEWR TF S PGYRR+ + S S+L + R PAE Q I + G + G+ RH G+ A+P G + + E+ + + +D+ A +++ G+ ++ +F+WKGHNYL K+AHDL+FLDD E+APV WLGFSV NPFLIPP G ++C+ L R RE G RR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G+ D R P+ ++ Q Q PP AD A G +++ S T N+ +P + + ++ GG FVT G +GS SA+TSV+ P GLG DE+ IP +LS+ EEEE+QW GG LD PI+P L E VRSKA AAA+ LRSE A+ + + SSA I++N +RT+ ILH ++ S ++E L+E+S R GLRGALVDRHVGATRLK S CR +E P VR VSTAPARG G A C+G A A+ G R+ AAFG+ SRGGV VSVDG E N + R + P+ + L SG+ S TS +RL GT+EG T T+A S A +RS SSSLQA +A+RPTA RRPFC G R+II DPG SP++RR+AA IQAA LA+CARR VR LRD R+ A LI RNWRR R + M A+R RRAE LR+VA+ R+RNRAAHV+QTFFRD+KYRR+RDR +SL+ + LAS+LRE+ AA+ VQV +RR IAS +V+ +RH R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + L K SL+PDEAATR+QAW RGV RR AA +A
Sbjct: 8 RDVIHAVEGAQKMKTCHKAKIRKERDARSLLGQDVRPRTSEPRSLIVTLKRLIRRLRRRCGKLQELLRWEAKFRWHYGKSPPEVAVCSTRSTRKTLLSEQQELRVVLAHLRAMSFDTVKAVSEWRTTFLGSGKPGYRRM--HPSESALVRSNGMTRFLESPAEFQEHDHDIGIV-YRGDEEGHLQGNKQRHSQREHPGLIDASPEGQQAGLKRRSSAAESMHHHEPHDVRDEDDDNALTRSITVPRPFVGKNDSNPAPVFLWKGHNYLTKLAHDLEFLDDADESAPVSAWLGFSVRDNPFLIPPNGLNVCEDLRRQREXXXXXXXXXXXXXXXHQRSGGTGNGQRRLSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIKGR------DAR-----------PKPMVLTPQQ--QSAPPMADADANDEGRQRKSESATENVVTTSPLLLVTDDQRDGVDGGGGIFVTEGVARSAFSTAAAAEGSLRSASTSVESPLFPPGLGYSDDENTIPHQLSTDEEEELQWAGGGRLDLPIVPKLHESVRSKALAAAQVLRSEAASEQALTSSARAILSNARRTEGILHTPEKDCSFRMESLAERSVREGLRGALVDRHVGATRLKWSPSLLKSSSCVMMGMSPCCREEERPPFVRSVSTAPARGGGRPGLAV-ICSGAAAARGRAGAARLGHRRALAAFGSRGGGGGSSRGGVRVSVDGHREATDGAIAGAGKGSSDPSRCTQSVPRDGNNTNNRNEKGKRAPLPSSRSQCLESGTGSETS------TTRL--------GGTNEG--TADTTAVSAAPPGDRSTT-SSSLQASSSTMSARARAKALAVRPTARRRPFCRNGGGRVIIPDPGVSPDVRRRAAARIQAALLALCARRYVRGLRDDRDRAVRLIWRNWRRCRAKADMRTARRLRRAEGLRRVAEERSRNRAAHVVQTFFRDVKYRRERDRHEMSLRGDPGALASQLREETAAIAVQVHVRRLIASKRVRGVRHTRRAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGDQDVSYYLEMATMRTKPLSLQPDEAATRIQAWRRGVYYRRVAGVAAAQA 1080 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig204.6136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig204.6136.1 >prot_L-elsbetiae_contig204.6136.1 ID=prot_L-elsbetiae_contig204.6136.1|Name=mRNA_L-elsbetiae_contig204.6136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1469bp RFGPGRLSRRRNQTKRLQELRARRSTGAMPGLENGTQMSRGSSGGYELFKback to top mRNA from alignment at L-elsbetiae_contig204:7278..18221- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig204.6136.1 ID=mRNA_L-elsbetiae_contig204.6136.1|Name=mRNA_L-elsbetiae_contig204.6136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10944bp|location=Sequence derived from alignment at L-elsbetiae_contig204:7278..18221- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig204:7278..18221- >mRNA_L-elsbetiae_contig204.6136.1 ID=mRNA_L-elsbetiae_contig204.6136.1|Name=mRNA_L-elsbetiae_contig204.6136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8814bp|location=Sequence derived from alignment at L-elsbetiae_contig204:7278..18221- (Laminarionema elsbetiae ELsaHSoW15)back to top |