Homology
BLAST of mRNA_L-elsbetiae_contig20393.6134.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI) HSP 1 Score: 51.6 bits (122), Expect = 8.260e-5 Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1 Query: 118 GLVYASVWADFCGDSRHGLLLVDRGTSVVTHGNGRAGHLGHGTPGYGLHPE 270
G+V+AS + HGL L D GTSV+T G+GR GHLGHGTP + P+
Sbjct: 465 GVVHASARIGNSCEVSHGLRLEDGGTSVLTWGDGRTGHLGHGTPAFEPKPK 515
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20393.6134.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match Name | E-value | Identity | Description | |
D8LDL9_ECTSI | 8.260e-5 | 50.98 | Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus silicu... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 435 |
Cds size | 435 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815841.273156-CDS-L-elsbetiae_contig20393:694..898 | 1622815841.273156-CDS-L-elsbetiae_contig20393:694..898 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig20393 695..898 - |
1691683138.8956578-CDS-L-elsbetiae_contig20393:694..898 | 1691683138.8956578-CDS-L-elsbetiae_contig20393:694..898 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig20393 695..898 - |
1622815841.2834444-CDS-L-elsbetiae_contig20393:1480..1711 | 1622815841.2834444-CDS-L-elsbetiae_contig20393:1480..1711 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig20393 1481..1711 - |
1691683138.90484-CDS-L-elsbetiae_contig20393:1480..1711 | 1691683138.90484-CDS-L-elsbetiae_contig20393:1480..1711 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig20393 1481..1711 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig20393.6134.1 >prot_L-elsbetiae_contig20393.6134.1 ID=prot_L-elsbetiae_contig20393.6134.1|Name=mRNA_L-elsbetiae_contig20393.6134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
QGSTNAETYVAVASYGCLLSSARGGETAELQKASSSGGDGLVYASVWADF CGDSRHGLLLVDRGTSVVTHGNGRAGHLGHGTPGYGLHPEDGDDSGRPGK RRSKRSKRGLVCKHAGLDCWCYRWWCWWWFGTRSRRGRSTKWEG* back to topmRNA from alignment at L-elsbetiae_contig20393:695..1711- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig20393.6134.1 ID=mRNA_L-elsbetiae_contig20393.6134.1|Name=mRNA_L-elsbetiae_contig20393.6134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1017bp|location=Sequence derived from alignment at L-elsbetiae_contig20393:695..1711- (Laminarionema elsbetiae ELsaHSoW15) CAGGGGAGTACCAACGCCGAGACGTACGTGGCCGTGGCGTCTTACGGCTG
TCTGCTCTCTTCCGCCAGAGGAGGTGAGACCGCCGAGCTGCAGAAGGCCA
GCAGCAGCGGCGGCGACGGGTTGGTCTATGCGTCGGTCTGGGCCGATTTC
TGCGGCGACAGTAGGCACGGGCTCCTGCTCGTGGACCGGGGGACATCGGT
GGTAACGCACGGGAACGGCAGGGCTGGCCATGTGAGTTCAGAGGGATGGG
CAAATACTAGCACTTGCTGCTGTGGTGGTTAATACACTGCTGTTTGTTGT
GCTGATACTTCTACATACATACGTGGTTTCTTCGTCTGTATGGGGCGCGC
AATACCGGGCGTTCGCGAGATATGTAGCAATCCAGCGGCCGCCGGCTTTG
GCAGTCCGAGAAGTTTTCGTTGACCTCGGTCTTGGCCCAACTTGTGTTTG
TGTGCGGTGTTTGCGTGTGTCTGTTTCGAGGCTCTGTTTGAGCGTTCCGC
GGCAGTGTAGTTTCTTCCAACGCAGCACGCATTCGAGTCATCTCTCGCCC
TCTCGATCCACACATGAAGACCTGCCCCCCCTCGTGAGCATCCACCCCGA
CATCCTGACCTCTGTGTGATGTACCAGGAAAGCTAGTCCTGACCCACGGC
TGGTGCACGGGTGTTGTTTAGTGCACTGCCGCTGTCTAAAGGTATACTCC
GTATCTCTTTATTCTTGCTCGGGGGCACCTGCTAGACGTACCCACTCCTC
TGTTCTGTCTCTCCGTTCATCTTGCTCACCTCTACCCTGCCTACGACACC
CCCTCCCCAGCAGCTCGGCCACGGAACCCCCGGCTACGGTCTGCACCCCG
AAGATGGTGACGACAGCGGCCGTCCTGGGAAGCGCCGTTCGAAGAGATCA
AAGCGGGGCTTGGTTTGCAAGCATGCAGGTCTCGACTGCTGGTGCTACCG
GTGGTGGTGCTGGTGGTGGTTCGGAACCCGAAGTCGGAGGGGACGCAGCA
CGAAGTGGGAGGGGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig20393:695..1711- >mRNA_L-elsbetiae_contig20393.6134.1 ID=mRNA_L-elsbetiae_contig20393.6134.1|Name=mRNA_L-elsbetiae_contig20393.6134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig20393:695..1711- (Laminarionema elsbetiae ELsaHSoW15) CAGGGGAGTACCAACGCCGAGACGTACGTGGCCGTGGCGTCTTACGGCTG TCTGCTCTCTTCCGCCAGAGGAGGTGAGACCGCCGAGCTGCAGAAGGCCA GCAGCAGCGGCGGCGACGGGTTGGTCTATGCGTCGGTCTGGGCCGATTTC TGCGGCGACAGTAGGCACGGGCTCCTGCTCGTGGACCGGGGGACATCGGT GGTAACGCACGGGAACGGCAGGGCTGGCCATCAGGGGAGTACCAACGCCG AGACGTACGTGGCCGTGGCGTCTTACGGCTGTCTGCTCTCTTCCGCCAGA GGAGGTGAGACCGCCGAGCTGCAGAAGGCCAGCAGCAGCGGCGGCGACGG GTTGGTCTATGCGTCGGTCTGGGCCGATTTCTGCGGCGACAGTAGGCACG GGCTCCTGCTCGTGGACCGGGGGACATCGGTGGTAACGCACGGGAACGGC AGGGCTGGCCATCTCGGCCACGGAACCCCCGGCTACGGTCTGCACCCCGA AGATGGTGACGACAGCGGCCGTCCTGGGAAGCGCCGTTCGAAGAGATCAA AGCGGGGCTTGGTTTGCAAGCATGCAGGTCTCGACTGCTGGTGCTACCGG TGGTGGTGCTGGTGGTGGTTCGGAACCCGAAGTCGGAGGGGACGCAGCAC GAAGTGGGAGGGGTAGCTCGGCCACGGAACCCCCGGCTACGGTCTGCACC CCGAAGATGGTGACGACAGCGGCCGTCCTGGGAAGCGCCGTTCGAAGAGA TCAAAGCGGGGCTTGGTTTGCAAGCATGCAGGTCTCGACTGCTGGTGCTA CCGGTGGTGGTGCTGGTGGTGGTTCGGAACCCGAAGTCGGAGGGGACGCA GCACGAAGTGGGAGGGGTAG back to top
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