mRNA_L-elsbetiae_contig2034.6120.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2034.6120.1
Unique NamemRNA_L-elsbetiae_contig2034.6120.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2034.6120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2034contigL-elsbetiae_contig2034:16082..16702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.8479788-UTR-L-elsbetiae_contig2034:16081..162671622815839.8479788-UTR-L-elsbetiae_contig2034:16081..16267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2034 16082..16267 +
1691683137.9608774-UTR-L-elsbetiae_contig2034:16081..162671691683137.9608774-UTR-L-elsbetiae_contig2034:16081..16267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2034 16082..16267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.858019-CDS-L-elsbetiae_contig2034:16267..167021622815839.858019-CDS-L-elsbetiae_contig2034:16267..16702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2034 16268..16702 +
1691683137.971841-CDS-L-elsbetiae_contig2034:16267..167021691683137.971841-CDS-L-elsbetiae_contig2034:16267..16702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2034 16268..16702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2034.6120.1prot_L-elsbetiae_contig2034.6120.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2034 16268..16702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2034.6120.1

>prot_L-elsbetiae_contig2034.6120.1 ID=prot_L-elsbetiae_contig2034.6120.1|Name=mRNA_L-elsbetiae_contig2034.6120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MGSEQPPASKPDRPRCIPTPQEATIEYRSACAKRMAYSYTPTKRTSHQPD
QRKGQHLNSQTNQTGTLLVHHRRHNYKIQDTKKRQSKTHFTLTQTIGSPR
TKKQDCGEWGGLESLTRASLAYTVFRDISNDFLSRREHPSHPCHH
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mRNA from alignment at L-elsbetiae_contig2034:16082..16702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2034.6120.1 ID=mRNA_L-elsbetiae_contig2034.6120.1|Name=mRNA_L-elsbetiae_contig2034.6120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig2034:16082..16702+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCGACGAGCAGCAGCCGCATCTTGTCTCGCTGAGCCGCTTCACCAGT
CGCAACCGGACATTCAGTTGTGATTACAAGCACATCGGGCTCTTCAGCGC
TTCGTCTGTACTGCCGCAGTTTACACGAAGCTTTGCCATGCCCCTTAAGC
ATAAAACTCTTGCTAGTTGAACGAGAGTAATTTTTCATGGGATCTGAACA
GCCGCCGGCATCTAAACCGGACCGCCCAAGATGCATACCCACCCCCCAAG
AAGCCACAATAGAATACCGCTCGGCGTGTGCAAAGCGCATGGCTTATTCC
TACACACCCACCAAACGAACATCGCACCAACCAGACCAACGCAAGGGACA
ACACCTAAACTCACAAACAAACCAGACAGGCACACTATTGGTACACCACC
GCCGCCACAACTACAAAATACAGGACACAAAAAAAAGGCAGTCGAAAACG
CACTTCACACTCACACAAACAATCGGTAGTCCGCGCACGAAAAAACAAGA
TTGTGGCGAGTGGGGGGGGCTTGAATCTCTGACTCGCGCTTCACTCGCGT
ATACGGTGTTTCGGGATATTTCCAACGACTTCCTTTCTAGAAGAGAGCAT
CCTTCACATCCATGCCACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2034:16082..16702+

>mRNA_L-elsbetiae_contig2034.6120.1 ID=mRNA_L-elsbetiae_contig2034.6120.1|Name=mRNA_L-elsbetiae_contig2034.6120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig2034:16082..16702+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCTGAACAGCCGCCGGCATCTAAACCGGACCGCCCAAGATGCAT
ACCCACCCCCCAAGAAGCCACAATAGAATACCGCTCGGCGTGTGCAAAGC
GCATGGCTTATTCCTACACACCCACCAAACGAACATCGCACCAACCAGAC
CAACGCAAGGGACAACACCTAAACTCACAAACAAACCAGACAGGCACACT
ATTGGTACACCACCGCCGCCACAACTACAAAATACAGGACACAAAAAAAA
GGCAGTCGAAAACGCACTTCACACTCACACAAACAATCGGTAGTCCGCGC
ACGAAAAAACAAGATTGTGGCGAGTGGGGGGGGCTTGAATCTCTGACTCG
CGCTTCACTCGCGTATACGGTGTTTCGGGATATTTCCAACGACTTCCTTT
CTAGAAGAGAGCATCCTTCACATCCATGCCACCACATGGGATCTGAACAG
CCGCCGGCATCTAAACCGGACCGCCCAAGATGCATACCCACCCCCCAAGA
AGCCACAATAGAATACCGCTCGGCGTGTGCAAAGCGCATGGCTTATTCCT
ACACACCCACCAAACGAACATCGCACCAACCAGACCAACGCAAGGGACAA
CACCTAAACTCACAAACAAACCAGACAGGCACACTATTGGTACACCACCG
CCGCCACAACTACAAAATACAGGACACAAAAAAAAGGCAGTCGAAAACGC
ACTTCACACTCACACAAACAATCGGTAGTCCGCGCACGAAAAAACAAGAT
TGTGGCGAGTGGGGGGGGCTTGAATCTCTGACTCGCGCTTCACTCGCGTA
TACGGTGTTTCGGGATATTTCCAACGACTTCCTTTCTAGAAGAGAGCATC
CTTCACATCCATGCCACCAC
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