mRNA_L-elsbetiae_contig2034.6117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI) HSP 1 Score: 163 bits (412), Expect = 1.170e-48 Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1 Query: 295 MAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDGLVDCGRLGGVRDGGFAGRDGAHAWLTVKIPVVLISAAQGERLREMMPLQKVAVKGLGEQLVER 606 MAA +VLFERGEVPVVEK+LKAQ AGA G++VVD+GGC DGLVDCGRLGG RDGGFA RDG HAW VKIP V++SAA GER R MM LQK+ V+GLGEQLV+R Sbjct: 1 MAACVVLFERGEVPVVEKILKAQTAGAVGVIVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMLLQKIVVEGLGEQLVQR 104
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: A0A835Z4S0_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S0_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.280e-46 Identity = 80/159 (50.31%), Postives = 110/159 (69.18%), Query Frame = 1 Query: 124 PLLHLHFCLGCLDAAAEGSLVQALAPHHGIRDFKVSGDLVYAVPNKGNADVLLNGDDMAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDGLVDCGRLGGVRDGGFAGRDGAHAWLTVKIPVVLISAAQGERLREMMPLQKVAVKGLGEQLV 600 PL ++ FCL C D EGS V AL HG R F +GD++YAVPN G+A+ LLN D++A I L +RG +P++EKVLK QAAGA G ++VD+G CS+ + CGR GGV +GGFA RD + W VKIP +L+S +G R++ +M L+ + + G G+QLV Sbjct: 40 PLQYVEFCLDCPDPHLEGSHVPALRAAHGQRAFNATGDIIYAVPNDGSAE-LLNPDEVAGHIALLDRGTIPLIEKVLKVQAAGAVGALLVDNGECSEDFMRCGRTGGVPEGGFAWRDQPYDWSKVKIPALLVSEKEGSRVKALMSLRSIFITGHGDQLV 197
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH) HSP 1 Score: 129 bits (324), Expect = 6.400e-34 Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 1 Query: 112 DAPFPLLHLHFCLGCLDAAAEGSLVQALAPHHGIRDFKVSGDLVYAVPNKGNADVLLNGDDMAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDGLVDCG-RLGGVRDGGFAGRDGAHAWLTVKIPVVLISAAQGERLREMMPLQKVAVKGLG 588 DA L + +CL C D +EGS++ +L +G+ ++ V+G+LVY VPN L N ++ I +RGE+ +++KVLK Q A A G+V+ DDG C + CG R G +++GGFA D +WL V+IPVV++++ +RLR+ M ++ V + GLG Sbjct: 34 DADGALKWITYCLKCPDPRSEGSILPSLNAKYGVDEYSVTGELVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRLRDAMGIKSVYIPGLG 193
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.150e-24 Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 136 LHFCLGCLDAAAEGSLVQALAPHHGIRDFKVSGDLVYAVPNKGNADVLLNGDDMAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDGLVDCGRLGGVRDGGFAGRDGAHAWLTVKIPVVLISAAQGERLREMMPLQKVAVKGL 585 L FC C D A+ GS V + D+ V G++ YAVPN N D L N + IVL +RG+VP++EKV + Q AG +V+VDDG CSDG +CG LG F +D + W + IPVVLI G R++ M L ++ V L Sbjct: 46 LTFCKKCHDVASLGSFVHTWDSRYNPSDYHVQGEIAYAVPNTANDD-LFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDGECSDGF-ECGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRIKARMSLVRMDVPDL 193
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.790e-19 Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 1 Query: 127 LLHLHFCLGCLDAAAEGSLVQALAPHHGIRDFKVSGDLVYAVPNKGNADVLLNGDDMAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDG 417 L L FC C D EG+ V L G +++ V+GD+ YAVPN+ LLN +++ I +RG++P+VEK+L AQ AGA G+V+ DDG C++G Sbjct: 55 LRSLEFCRSCPDPHLEGTQVLGLGAAQGPKEYHVTGDMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDGNCAEG 151
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: A0A5D6YDE3_9STRA (Proline--tRNA ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDE3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 9.440e-17 Identity = 61/168 (36.31%), Postives = 77/168 (45.83%), Query Frame = 1 Query: 133 HLHFCLGCLDAAAEGSLVQALAPHHGIRDFKVSGDLVYAVPNKGNADVLLNGDDMAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDGLVDCGRLGGVR-----DGGFAGRDGAHA-------------WLTVKIPVVLISAAQGERLREMMPLQKVAVKG 582 H+ FC C D EGS+V F V+ LV+A+PN G+ L N ++ I +F RG+V VV K AQAAGA +V D C G + C R GV D R+ AH+ WL V IPV ++SA G RLR M V V G Sbjct: 683 HVLFCRDCADLLLEGSVVIPHQSPFNPTKFFVTSALVFAIPNDGS-HALYNAHELQGKIAVFTRGKVSVVHKARVAQAAGAVAALVFDSDQCDPGAMHCHRTVGVSPLVGDDNNDRSRNAAHSRRIGPFHDDPPSEWLPVTIPVAMVSADDGARLRSFMDYVAVEVNG 849
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 2.220e-13 Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 202 HHGIRDFKVSGDLVYAVPNKGNADVLLNGDDMAASIVLFERGEVPVVEKVLKAQAAGAAGIVVVDDGGCSDGLVDCGRLGGVRDGGFAGRDGAHAWLTVKIPVVLISAAQGERL 543 H R FKV ++V A P ++ L NG + IV+ +RG++P+V KVL AQ AGA G++V DDG C G G+A D WL V++PVVL+ ERL Sbjct: 74 HFSPRSFKVKSEVVVAQPADARSE-LENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERL 186 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2034.6117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2034.6117.1 >prot_L-elsbetiae_contig2034.6117.1 ID=prot_L-elsbetiae_contig2034.6117.1|Name=mRNA_L-elsbetiae_contig2034.6117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp SSSSTSSSSSTSTSTSTSTRRDPQGKIRAAWAGSSRVDAPFPLLHLHFCLback to top mRNA from alignment at L-elsbetiae_contig2034:1604..4165+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2034.6117.1 ID=mRNA_L-elsbetiae_contig2034.6117.1|Name=mRNA_L-elsbetiae_contig2034.6117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2562bp|location=Sequence derived from alignment at L-elsbetiae_contig2034:1604..4165+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2034:1604..4165+ >mRNA_L-elsbetiae_contig2034.6117.1 ID=mRNA_L-elsbetiae_contig2034.6117.1|Name=mRNA_L-elsbetiae_contig2034.6117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig2034:1604..4165+ (Laminarionema elsbetiae ELsaHSoW15)back to top |