mRNA_L-elsbetiae_contig20325.6112.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20325.6112.1
Unique NamemRNA_L-elsbetiae_contig20325.6112.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20325.6112.1 vs. uniprot
Match: D7FQN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQN8_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.680e-13
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 CDQGALVVANDDFVCYGIKSNIRVIHRPTGARALIK 108
            C QGALVVAN DF CYGI SNIRVIHRPTGARALIK
Sbjct:   98 CKQGALVVANADFTCYGISSNIRVIHRPTGARALIK 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20325.6112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQN8_ECTSI8.680e-1388.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20325contigL-elsbetiae_contig20325:196..303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue5.4e-10
Seed eggNOG ortholog2880.D7FQN8
KEGG koko:K08592,ko:K12616
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.deadenylation-independent decapping of nuclear-transcribed mRNA
EggNOG OGsKOG1916@1,KOG1916@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.5302284-CDS-L-elsbetiae_contig20325:195..3031622815839.5302284-CDS-L-elsbetiae_contig20325:195..303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20325 196..303 -
1691683137.7274153-CDS-L-elsbetiae_contig20325:195..3031691683137.7274153-CDS-L-elsbetiae_contig20325:195..303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20325 196..303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20325.6112.1prot_L-elsbetiae_contig20325.6112.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20325 196..303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20325.6112.1

>prot_L-elsbetiae_contig20325.6112.1 ID=prot_L-elsbetiae_contig20325.6112.1|Name=mRNA_L-elsbetiae_contig20325.6112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=36bp
CDQGALVVANDDFVCYGIKSNIRVIHRPTGARALIK
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mRNA from alignment at L-elsbetiae_contig20325:196..303-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20325.6112.1 ID=mRNA_L-elsbetiae_contig20325.6112.1|Name=mRNA_L-elsbetiae_contig20325.6112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=108bp|location=Sequence derived from alignment at L-elsbetiae_contig20325:196..303- (Laminarionema elsbetiae ELsaHSoW15)
TGCGACCAGGGCGCCCTCGTCGTGGCCAACGACGACTTCGTGTGCTACGG
CATCAAGAGTAACATTCGGGTGATCCACAGGCCCACGGGCGCGAGAGCCC
TCATCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20325:196..303-

>mRNA_L-elsbetiae_contig20325.6112.1 ID=mRNA_L-elsbetiae_contig20325.6112.1|Name=mRNA_L-elsbetiae_contig20325.6112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig20325:196..303- (Laminarionema elsbetiae ELsaHSoW15)
TGCGACCAGGGCGCCCTCGTCGTGGCCAACGACGACTTCGTGTGCTACGG
CATCAAGAGTAACATTCGGGTGATCCACAGGCCCACGGGCGCGAGAGCCC
TCATCAAGTGCGACCAGGGCGCCCTCGTCGTGGCCAACGACGACTTCGTG
TGCTACGGCATCAAGAGTAACATTCGGGTGATCCACAGGCCCACGGGCGC
GAGAGCCCTCATCAAG
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