mRNA_L-elsbetiae_contig2032.6111.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2032.6111.1
Unique NamemRNA_L-elsbetiae_contig2032.6111.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2032.6111.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.400e-5
Identity = 22/39 (56.41%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:   72 SKCAHHDCTKLPSFGVAGSTKREFCGGHAKEGMMDLSHK 188
            S+C H +CTK P++GVAGS KREFC  HA++GM+++++K
Sbjct:   62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
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BLAST of mRNA_L-elsbetiae_contig2032.6111.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.260e-5
Identity = 22/39 (56.41%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:   72 SKCAHHDCTKLPSFGVAGSTKREFCGGHAKEGMMDLSHK 188
            S+C H +CTK P++GVAGS KREFC  HA++GM+++++K
Sbjct:    2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2032.6111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE2.400e-556.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI3.260e-556.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2032contigL-elsbetiae_contig2032:18219..21844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1194
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2032.6111.1prot_L-elsbetiae_contig2032.6111.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2032 20686..21567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.331974-UTR-L-elsbetiae_contig2032:18218..183541622815839.331974-UTR-L-elsbetiae_contig2032:18218..18354Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 18219..18354 -
1691683137.600544-UTR-L-elsbetiae_contig2032:18218..183541691683137.600544-UTR-L-elsbetiae_contig2032:18218..18354Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 18219..18354 -
1622815839.3428211-UTR-L-elsbetiae_contig2032:20676..206851622815839.3428211-UTR-L-elsbetiae_contig2032:20676..20685Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 20677..20685 -
1691683137.6138394-UTR-L-elsbetiae_contig2032:20676..206851691683137.6138394-UTR-L-elsbetiae_contig2032:20676..20685Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 20677..20685 -
1622815839.364694-UTR-L-elsbetiae_contig2032:21567..216601622815839.364694-UTR-L-elsbetiae_contig2032:21567..21660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 21568..21660 -
1691683137.6391513-UTR-L-elsbetiae_contig2032:21567..216601691683137.6391513-UTR-L-elsbetiae_contig2032:21567..21660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 21568..21660 -
1622815839.3786216-UTR-L-elsbetiae_contig2032:21770..218441622815839.3786216-UTR-L-elsbetiae_contig2032:21770..21844Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 21771..21844 -
1691683137.6532402-UTR-L-elsbetiae_contig2032:21770..218441691683137.6532402-UTR-L-elsbetiae_contig2032:21770..21844Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 21771..21844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.3521264-CDS-L-elsbetiae_contig2032:20685..215671622815839.3521264-CDS-L-elsbetiae_contig2032:20685..21567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2032 20686..21567 -
1691683137.622593-CDS-L-elsbetiae_contig2032:20685..215671691683137.622593-CDS-L-elsbetiae_contig2032:20685..21567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2032 20686..21567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2032.6111.1

>prot_L-elsbetiae_contig2032.6111.1 ID=prot_L-elsbetiae_contig2032.6111.1|Name=mRNA_L-elsbetiae_contig2032.6111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=294bp
MMDLSHKKCAHQGCTKSPSFGVAGSTKREFCAGHAKEGMVNVRGRREGSS
STRASRSSATPPTHSGLPLKLPIAGVGGGSSSSDTVRCPKSNRQRKSGTR
PSAPPPPRRSNAAGKGRLEEPFRSNGRAGQYRLPVATPADHGQDQGVGDV
QDPAVVARGFTLSQDHLGDDGVITTTATIKTEEEVVLSSGVVVPHGGSGR
EGRTVRRHSDSNGRGGKRKGRALPSSSQTIIDGDVSWGKSSRQSRSKRAR
AAGDDDDDVVVLEPGDERLAAAGTAGGGAGAVAGARVAIKPER*
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mRNA from alignment at L-elsbetiae_contig2032:18219..21844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2032.6111.1 ID=mRNA_L-elsbetiae_contig2032.6111.1|Name=mRNA_L-elsbetiae_contig2032.6111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3626bp|location=Sequence derived from alignment at L-elsbetiae_contig2032:18219..21844- (Laminarionema elsbetiae ELsaHSoW15)
GGGAAGTACGAAGCGAGAGTTCTGCGTTGGGCATGCCAAGGAAGGCATGA
TCGACCTCAGCAACAGGAAGAAGTGTGAACACCAGGGCTGCACCAAGGGT
CCGTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCCGCACA
TGCGGAGGAAGGCATGATCGACGTCCTGAACAAGAAGTGTGCACACCATG
ACTGCACCAAGCTTCCGTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAG
TTCTGCGGGGGACATGCCAAGGAAGGCATGATGGACCTCAGCCACAAGAA
GTGCGCACACCAGGGCTGCACCAAGAGTCCGTCGTTTGGCGTCGCGGGAA
GCACGAAGCGAGAGTTCTGCGCGGGACATGCCAAGGAAGGCATGGTGAAT
GTGAGAGGCAGGCGCGAGGGTAGCAGCAGCACGCGCGCTAGCAGAAGCTC
CGCAACCCCACCGACCCATTCGGGCCTGCCATTGAAACTGCCCATTGCTG
GAGTTGGCGGCGGCAGCAGCAGCAGCGATACCGTGCGCTGCCCCAAATCA
AACCGACAGCGGAAATCCGGCACTCGCCCTTCCGCCCCGCCGCCGCCTAG
GCGTAGCAATGCGGCTGGCAAGGGCAGGTTGGAGGAGCCATTTCGGAGCA
ATGGCCGAGCCGGCCAGTATCGCCTTCCGGTGGCGACCCCCGCGGATCAC
GGTCAAGATCAAGGGGTAGGGGACGTCCAAGATCCAGCCGTCGTCGCGAG
GGGCTTCACACTTTCTCAGGACCATCTAGGAGATGATGGCGTCATCACCA
CCACCGCCACGATCAAGACGGAGGAGGAAGTGGTGCTCTCATCTGGCGTG
GTTGTCCCTCATGGCGGCTCGGGGAGGGAAGGCCGCACCGTTAGACGCCA
TTCCGATAGTAACGGGCGAGGGGGAAAGCGCAAAGGCCGTGCCCTCCCGT
CCTCCAGCCAGACGATTATTGATGGTGATGTATCATGGGGCAAGAGCAGC
AGGCAGAGTCGCAGCAAGAGAGCTCGCGCAGCCGGCGACGACGATGATGA
TGTCGTTGTCCTGGAGCCCGGAGATGAAAGATTAGCAGCCGCGGGAACAG
CCGGTGGTGGTGCGGGTGCTGTGGCAGGGGCGAGGGTAGCGATCAAGCCT
GAACGTTGATCTCTGCAGGTGATGTGTCTACCGAGTATGCTGCTGTTGTC
GCCGCCTTTGTTCATTATCTGCAGACTCGAGTCTCAGACATTGAAGAACG
CACTCCCGCTACCAATAGATAACAGCCGAAATATAGGAGCACAGGTCCGT
ATATACCCAGGTACACTCTCGGTGTGGTTCGGTAGTGCACACGGTTGCCT
ATTTTAAATTACAGGTTACGTTTCCTCACAAAATCGCGGTTACATTTGTT
GACAAAGCCACGGGATAACTCAACCCCAAAATCAGCTAGACACATATCTA
CAATGGTGCGCAAGAGACAATGTTTTTTGCCATTGCTAAGCGCTCATAGT
TGGTAAAGAAGGGATAAAATGAGATATATGTCGTATTGCTCTTTTCTGTG
GTTGATGTGACAAAGTTAGCAAGTACCAGAGTACACGCGTCTACGCTGGC
TTCGCGGTAGAGAGCACCGCGCACCCACCTGTTTTTGTGTCCTCTGTGCC
ATGAGTAAAGGTCTTCGCGATTACACAGACCCTCAACGGTATTTTGTATT
TGCCGTTTCTTGTATTTTCTGCACGCAATACCGATGTATGAGCGGCTGAA
TAAAGGTCAGCCCGCCCAAAAGGCCGTCGTTTTATCCTTTTCCGGAAAGC
AGAGAAGAAAACAAGAAACTCGACAAAATCGCAAAATGAATACATGAGTA
GCGCAAATATTTGCTCTGTTTTCCGCTTCAGCACTGGCAGACAGTACATA
CGCCTCGTGCCAAGCCACTTGGGCTAAATAGTTTCCACCACAGATTGGTA
GCATGCCAAATTCATGACACGTTCGGCCAAAAACGATCGAACTTAGCCAA
AATGTGGTCATTTTCGGTCCACCAGTTCTCAGTACGACTCGGATTTTGTT
TTGTTTTTTCGTTGGGCATCACCACATCAATACATCGCGCTCGTTACACC
GATGTTTATGGCAGCAAAATCTTTACCAAAGTGTCGAAAATTTGTTCAAG
GTTTTGTTCCTGCTTGTTATGGAAGGAAATCTTTGAAAAAAACTTAGCCA
AGGTTTTTTTTCCGCCCAAAACCTTCGCTTTGGGCCAAATGTTTGGCCAA
GATTTGATCTGCTGGCGGCGCAATAAAATCTTGTCTGAAAGCGGTGAGAT
GGTTTTCCTTGCCAACTTCAGTGTGAACACCGACCACAGGCGCCCTGAGC
TGAACGCAACTAGACTAAAAAAGGAAAAGAGGCTTCGGACAACCCCAGAG
TCTTCGAGTCAACATATCAACCGCTAGTATATGGCAGGAGCACGCCAGCC
AAGCGGACTTCCCAAGCTAGTATAGGACAGTGCGGCTTGGGAAGGCATCG
TGTGCGCCTCTGCAAAACGTAACATATACGCCGACGGCGAGGGGACGATA
ACACGTCGCAGTCCAGCCCTCGCCCGCTAGAGCACGTTTTCAAGTGGACC
TTTCTTTGCTGTCACCTCCATAAACGTATCTCATCCGGAAGGGCATGGGT
TGGTTGTGAGCTTCTATCGGAAGTAAAACGTAATGCTGTTTACACGGAGG
TTGCTGTACGTTTTTTTTTGAGGCGGGTCAACAAGGTCTCTGCACTTAAG
TAGTTAACAAAGCCCGATATTTTCACGTCCAGAGTCTTCGAGTACACGGC
GGTGCGCATTACTCCTGATTTGGAGACGCTCACAATCAACCCAAGCCCTA
CCTGATGAGACACGTTTACGGAGATGACAGCCGAGAAAGTTTCAAGTCAG
ATCGTGGTCCACCAGGCGAAAGCTAGACTGCTATGTAGTGTTGTCTCTCA
GCCGGCTGATTTCGGTTGCTAATTGCCCGTTGGGCCGTGGAAACGCACCG
CTGCGCTGCCCCAAAGACATTAGCTTGAACACCGAGGGGGGCTCCGCTAT
ACATCGACGACCAAAATATCACAACCGGTGGCTGCTAGTTTGCCCGGGGG
CTTTTTGGAGCTCGCTGTGTTAATGTTTTATGGCGTATGGGCGGTTTGTC
CAGCATACACTGTTCGACGAACTGCTGAGGCAAATCTCCGCCGCATTAGA
AAGATTCGATTGATCAAGATTTTTTCCCCGGAGTAGCAGGTACAAAAATC
TTCGACTGCCGAATATTCACAGCAAACGTTAACGTTTGCACAAATTTTGA
ACATCTTGGTGCACGATTTCGCTTCCATGAACACCGGTGTTGTTGTAGCA
TATAGCACTGTGCGCTCCACTCAGTTTGCGACCCCCCCCAAGGACCTTCA
CTTATGGCACAGAGGAAGTATCACTCTTGCTTAGCCCCTAAATGCACCTC
ACCCTCTTCTTCTCATTGCTCCGCTCATCTATATCCTCAGATATGCTCTT
CCCTCACCCCTCAGCATGCAGCCGAGACGAAGATCCATGGCAAAAGGCTT
TGGATCCTCGGAGCTGGCGGAGTCCTGGTACGAGACGGCTCCAGGCGTGA
CAACTCTTTGTTTCGGAAATTTCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2032:18219..21844-

>mRNA_L-elsbetiae_contig2032.6111.1 ID=mRNA_L-elsbetiae_contig2032.6111.1|Name=mRNA_L-elsbetiae_contig2032.6111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1764bp|location=Sequence derived from alignment at L-elsbetiae_contig2032:18219..21844- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGACCTCAGCCACAAGAAGTGCGCACACCAGGGCTGCACCAAGAG
TCCGTCGTTTGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCGGGAC
ATGCCAAGGAAGGCATGGTGAATGTGAGAGGCAGGCGCGAGGGTAGCAGC
AGCACGCGCGCTAGCAGAAGCTCCGCAACCCCACCGACCCATTCGGGCCT
GCCATTGAAACTGCCCATTGCTGGAGTTGGCGGCGGCAGCAGCAGCAGCG
ATACCGTGCGCTGCCCCAAATCAAACCGACAGCGGAAATCCGGCACTCGC
CCTTCCGCCCCGCCGCCGCCTAGGCGTAGCAATGCGGCTGGCAAGGGCAG
GTTGGAGGAGCCATTTCGGAGCAATGGCCGAGCCGGCCAGTATCGCCTTC
CGGTGGCGACCCCCGCGGATCACGGTCAAGATCAAGGGGTAGGGGACGTC
CAAGATCCAGCCGTCGTCGCGAGGGGCTTCACACTTTCTCAGGACCATCT
AGGAGATGATGGCGTCATCACCACCACCGCCACGATCAAGACGGAGGAGG
AAGTGGTGCTCTCATCTGGCGTGGTTGTCCCTCATGGCGGCTCGGGGAGG
GAAGGCCGCACCGTTAGACGCCATTCCGATAGTAACGGGCGAGGGGGAAA
GCGCAAAGGCCGTGCCCTCCCGTCCTCCAGCCAGACGATTATTGATGGTG
ATGTATCATGGGGCAAGAGCAGCAGGCAGAGTCGCAGCAAGAGAGCTCGC
GCAGCCGGCGACGACGATGATGATGTCGTTGTCCTGGAGCCCGGAGATGA
AAGATTAGCAGCCGCGGGAACAGCCGGTGGTGGTGCGGGTGCTGTGGCAG
GGGCGAGGGTAGCGATCAAGCCTGAACGTTGAATGATGGACCTCAGCCAC
AAGAAGTGCGCACACCAGGGCTGCACCAAGAGTCCGTCGTTTGGCGTCGC
GGGAAGCACGAAGCGAGAGTTCTGCGCGGGACATGCCAAGGAAGGCATGG
TGAATGTGAGAGGCAGGCGCGAGGGTAGCAGCAGCACGCGCGCTAGCAGA
AGCTCCGCAACCCCACCGACCCATTCGGGCCTGCCATTGAAACTGCCCAT
TGCTGGAGTTGGCGGCGGCAGCAGCAGCAGCGATACCGTGCGCTGCCCCA
AATCAAACCGACAGCGGAAATCCGGCACTCGCCCTTCCGCCCCGCCGCCG
CCTAGGCGTAGCAATGCGGCTGGCAAGGGCAGGTTGGAGGAGCCATTTCG
GAGCAATGGCCGAGCCGGCCAGTATCGCCTTCCGGTGGCGACCCCCGCGG
ATCACGGTCAAGATCAAGGGGTAGGGGACGTCCAAGATCCAGCCGTCGTC
GCGAGGGGCTTCACACTTTCTCAGGACCATCTAGGAGATGATGGCGTCAT
CACCACCACCGCCACGATCAAGACGGAGGAGGAAGTGGTGCTCTCATCTG
GCGTGGTTGTCCCTCATGGCGGCTCGGGGAGGGAAGGCCGCACCGTTAGA
CGCCATTCCGATAGTAACGGGCGAGGGGGAAAGCGCAAAGGCCGTGCCCT
CCCGTCCTCCAGCCAGACGATTATTGATGGTGATGTATCATGGGGCAAGA
GCAGCAGGCAGAGTCGCAGCAAGAGAGCTCGCGCAGCCGGCGACGACGAT
GATGATGTCGTTGTCCTGGAGCCCGGAGATGAAAGATTAGCAGCCGCGGG
AACAGCCGGTGGTGGTGCGGGTGCTGTGGCAGGGGCGAGGGTAGCGATCA
AGCCTGAACGTTGA
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