mRNA_L-elsbetiae_contig2032.6110.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2032.6110.1
Unique NamemRNA_L-elsbetiae_contig2032.6110.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2032.6110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2032contigL-elsbetiae_contig2032:12814..16124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2162
Cds size1464
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2032.6110.1prot_L-elsbetiae_contig2032.6110.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2032 12835..14544 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.2397783-UTR-L-elsbetiae_contig2032:12813..128341622815839.2397783-UTR-L-elsbetiae_contig2032:12813..12834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 12814..12834 +
1691683137.5431383-UTR-L-elsbetiae_contig2032:12813..128341691683137.5431383-UTR-L-elsbetiae_contig2032:12813..12834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 12814..12834 +
1622815839.2771559-UTR-L-elsbetiae_contig2032:14544..145531622815839.2771559-UTR-L-elsbetiae_contig2032:14544..14553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 14545..14553 +
1691683137.5751357-UTR-L-elsbetiae_contig2032:14544..145531691683137.5751357-UTR-L-elsbetiae_contig2032:14544..14553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 14545..14553 +
1622815839.2894244-UTR-L-elsbetiae_contig2032:15456..161241622815839.2894244-UTR-L-elsbetiae_contig2032:15456..16124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 15457..16124 +
1691683137.5864866-UTR-L-elsbetiae_contig2032:15456..161241691683137.5864866-UTR-L-elsbetiae_contig2032:15456..16124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2032 15457..16124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.2538779-CDS-L-elsbetiae_contig2032:12834..131831622815839.2538779-CDS-L-elsbetiae_contig2032:12834..13183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2032 12835..13183 +
1691683137.5542362-CDS-L-elsbetiae_contig2032:12834..131831691683137.5542362-CDS-L-elsbetiae_contig2032:12834..13183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2032 12835..13183 +
1622815839.2659123-CDS-L-elsbetiae_contig2032:13429..145441622815839.2659123-CDS-L-elsbetiae_contig2032:13429..14544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2032 13430..14544 +
1691683137.5647836-CDS-L-elsbetiae_contig2032:13429..145441691683137.5647836-CDS-L-elsbetiae_contig2032:13429..14544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2032 13430..14544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2032.6110.1

>prot_L-elsbetiae_contig2032.6110.1 ID=prot_L-elsbetiae_contig2032.6110.1|Name=mRNA_L-elsbetiae_contig2032.6110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=488bp
MMPARCSRGDCAKAASCGYKGARKLLFCAGHAKEGMVDLKNRCRKKCSHQ
GCTKIPSFGVAGSTKREFCAGHAKQGMIDLKNGHGKKCAHQGCTKIPSFG
VAASTKREFCAGHPKEGMIDLKNRFRKKCSHQGCIKIPSFGVAGITKREF
CAAHAEEGMIDLRNMHSKKCSHQGCTKIPSFGVAGSTKREFCAAHAEEGM
IDLKHMHSKKCSHQGCTKIPSFGVAGITKREFCAVHAKKGMVNVKDRREG
GSTSVSSGSATPPNHSGLLSALHTAGGGSSSTVRRQPSNRERKSDTHLPA
PPSNRRSNATDTVRLEEPVQSNSEAGMSRLPVAPPTSQDQAHCQEVNQDP
GVVAGSSSSSLYHLGGDDVITTTATVKSEEEVVLSSGVVVPDGASGGEDD
TVRCHADGTGRGGKRKGRALPSSTQITTGGCASWGKNSRQSRSKRVRAAR
DDGDVVVLEPGDVGAAAAGTTGGGAPAGARVAVKPER*
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mRNA from alignment at L-elsbetiae_contig2032:12814..16124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2032.6110.1 ID=mRNA_L-elsbetiae_contig2032.6110.1|Name=mRNA_L-elsbetiae_contig2032.6110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3311bp|location=Sequence derived from alignment at L-elsbetiae_contig2032:12814..16124+ (Laminarionema elsbetiae ELsaHSoW15)
GGACGGCTTGACGCTTGACACATGATGCCGGCGCGTTGCTCGCGTGGAGA
TTGCGCGAAGGCGGCGAGCTGTGGGTATAAAGGTGCCAGGAAGCTCCTCT
TCTGCGCCGGGCATGCCAAGGAAGGCATGGTCGACCTCAAGAACAGGTGC
AGGAAGAAGTGCTCACACCAGGGCTGCACCAAGATCCCGTCGTTCGGCGT
CGCGGGGAGCACGAAGCGAGAGTTCTGCGCCGGACATGCCAAGCAAGGCA
TGATCGACCTCAAGAACGGGCACGGGAAGAAGTGCGCACACCAGGGCTGC
ACCAAGATTCCGTCGTTCGGCGTCGCGGCAAGCACGAAGCGAGAGTTCTG
CGCTGGACATCCCAAGGAAGGCATGATCGACCTCAAGAACAGGTTCAGGA
AGAAGTGCTCACACCAGGGCTGCATCAAGATCCCGTCGTTTGGCGTCGCG
GGAAGCACGAAGCGAGAGTTATGTGCCGGGCATGCGGAGGAAGGGATGGT
CGACCTCACGAACATGCACAGGACGAAGTGTGCACACCAGGGCTGCACCA
AGATTCCGTCGTTCGGCGTCGCGGCAAGCACGAAGCGAGAGTTCTGCGCT
GGACATGCCAAGGAAGGCATGATCGACCTCAAGAACAGGTTCAGGAAGAA
GTGCTCACACCAGGGCTGCATCAAGATCCCGTCGTTTGGCGTCGCGGGAA
TCACGAAGCGAGAGTTCTGCGCCGCACATGCGGAGGAAGGCATGATCGAC
CTCAGGAACATGCACAGCAAGAAGTGCTCACACCAGGGCTGCACCAAGAT
TCCGTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCAGCAC
ATGCGGAGGAAGGCATGATCGACCTCAAGCACATGCACAGCAAGAAGTGC
TCACACCAGGGCTGCACTAAGATTCCGTCGTTTGGCGTCGCGGGAATCAC
GAAGCGAGAGTTCTGCGCTGTACACGCCAAGAAAGGCATGGTGAACGTGA
AGGACAGGCGCGAGGGGGGTAGCACGTCCGTCAGCAGTGGCTCAGCGACC
CCACCAAACCACTCGGGCCTGCTATCGGCACTGCACACAGCTGGAGGCGG
CAGCAGTAGTACCGTGCGCCGCCAGCCATCAAACCGAGAGCGGAAATCCG
ACACTCACCTTCCTGCCCCGCCATCGAACAGACGCAGCAATGCGACTGAT
ACGGTGCGATTGGAGGAGCCCGTTCAGAGTAACAGCGAAGCTGGGATGTC
TCGTCTGCCCGTGGCGCCCCCCACAAGTCAAGATCAAGCCCATTGTCAAG
AGGTAAATCAAGACCCAGGCGTCGTCGCGGGGAGCTCCTCGTCTTCCCTC
TACCATTTAGGAGGCGATGACGTAATCACTACAACCGCCACCGTCAAATC
GGAGGAGGAAGTGGTGCTCTCATCTGGCGTGGTTGTCCCTGATGGCGCCT
CGGGGGGGGAAGACGACACTGTTAGATGCCATGCTGATGGTACCGGGCGA
GGGGGAAAGCGCAAAGGCCGTGCCCTCCCGTCCTCCACTCAGATCACTAC
TGGTGGTTGTGCGTCATGGGGCAAGAACAGTAGGCAGAGTCGCAGCAAGA
GAGTTCGTGCAGCCCGCGACGACGGTGATGTGGTTGTCCTGGAGCCCGGA
GATGTAGGAGCAGCAGCCGCGGGAACAACCGGCGGTGGTGCTCCGGCAGG
GGCGAGGGTCGCGGTCAAGCCTGAACGTTGATCTCTGCAGGTAATGTGTT
TGCCGAGTAGAATACTGCTGTTATCGTCGCCTCTTTCTTCGCCGTCTCGC
AGATTTGACTCTTTAATACTTTAGAACACATTCCACGCTGCAAGTAACAC
TTTTGCTTCGTAAATCGAAATAGACTATACCAATATATAGCCGAAAAACA
AAAAGGCGTGAAGTTACATACCTGATCACACTCGGTGCGCTTCCGCAGTG
CACACGATTGCCCATCTTGATTTGTTTGATACTTCTACTTGTCAACAAAA
CTCTGGGGTAACTCAGCCTCGATAGTTTTCGGTTTCGCACAACCCATGAT
ACGATGGTGGATAGGGTGGAATGTCTTTCGCCGCCGACGAGCGCTCGCGG
TTGGTTAACAAGGGATATTATGCGGTAGGTGTCATATTCCCTGCCCCAAA
CTAAACAATTATTTAATAATGAAATAAAATTAAACACGCCACATAATATA
TAGGAGTATATCATAGTCTTTCTATATCGTAGACATCTTCATATGTAGAC
TAGTCTGTTAGGGATAATCGATAAAGTGTTCAACGCTGTAGACTACGTAA
ACTCATTGCTCCTCTCTTTTGTGGCGAAGCACCATGACATACGCGTCTAC
CCTAGCTCCGCGGCTGAGAGAACCCGCGCACGCATGTTCGGCAACACTCG
TACGCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCAAACCCCCCCCCCCCCCCCCCCCCCCCGCCCCAAAACAAA
ATCCAGCAAAACCCCCCCCCNNNNNNNNNNACCCTCGCCCCGCGGCGTAG
AGAACCCCCCCCCCCATTTCCCGCAACCCCCCCCCCCCCCCCACCCCCCC
CCCCCCCCTCCTGCTCGTTGTCTCCCTCATGTATACCCTTAAGAATGCTA
CGCCCCCAGCATGCGGCCGAGACGAAAAATATTGGCAAGGAATCTGACCC
TTGGAACTGACAAGGTTCCAGCACCAGACGGCACCACCAGCCGGAACGAC
TACTACTGTTGACCCTTCTATAAGTCAAGTTGTTTTGTGATAATTTTGGG
TCGTAGTATCTCTTGGCCGGCCAGTTTTTGTGTAGGGTGGGAGCACGCTT
GTCGGATTTCAGCCCTGGGGGCGTACTACGGTTGGTAGCGTACAACGGGG
GTACACACGTACATCTATCTATGATGACGTGGTTTTCACGCGTGGTGATG
CGTCAAAGGAACCATAAACGAAAAGTATCGCTAAGGTTGCAAATACTTTC
CAAAAGCTCTATGGTAGAGGACTGCTGCGATGTCGAGCCTCTGAAACCTG
AAATTCTGCAGAAGTAGGTTTCTGGTTCCACTCAAAATGCAGCTTCCTAC
GTTGATCGATCCCCTCGTTCTGGGCTCGTTCTGTTGATGTAACTCTTGAA
GAGTGCCTCTTGCTGTTTGCACGCCAGGGGTCTACGTCCAGCTGTCTGGA
GGTACTTCGTTTCCCAGAAGAGAGCCGCTGCTATGGAAGCAAAAATCTTC
CGCTCGCTGTCGAGTACAATCGCATGGTGAAGCCTTTAGTCTACATACTG
TAACGGTAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2032:12814..16124+

>mRNA_L-elsbetiae_contig2032.6110.1 ID=mRNA_L-elsbetiae_contig2032.6110.1|Name=mRNA_L-elsbetiae_contig2032.6110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2928bp|location=Sequence derived from alignment at L-elsbetiae_contig2032:12814..16124+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCCGGCGCGTTGCTCGCGTGGAGATTGCGCGAAGGCGGCGAGCTG
TGGGTATAAAGGTGCCAGGAAGCTCCTCTTCTGCGCCGGGCATGCCAAGG
AAGGCATGGTCGACCTCAAGAACAGGTGCAGGAAGAAGTGCTCACACCAG
GGCTGCACCAAGATCCCGTCGTTCGGCGTCGCGGGGAGCACGAAGCGAGA
GTTCTGCGCCGGACATGCCAAGCAAGGCATGATCGACCTCAAGAACGGGC
ACGGGAAGAAGTGCGCACACCAGGGCTGCACCAAGATTCCGTCGTTCGGC
GTCGCGGCAAGCACGAAGCGAGAGTTCTGCGCTGGACATCCCAAGGAAGA
TGATGCCGGCGCGTTGCTCGCGTGGAGATTGCGCGAAGGCGGCGAGCTGT
GGGTATAAAGGTGCCAGGAAGCTCCTCTTCTGCGCCGGGCATGCCAAGGA
AGGCATGGTCGACCTCAAGAACAGGTGCAGGAAGAAGTGCTCACACCAGG
GCTGCACCAAGATCCCGTCGTTCGGCGTCGCGGGGAGCACGAAGCGAGAG
TTCTGCGCCGGACATGCCAAGCAAGGCATGATCGACCTCAAGAACGGGCA
CGGGAAGAAGTGCGCACACCAGGGCTGCACCAAGATTCCGTCGTTCGGCG
TCGCGGCAAGCACGAAGCGAGAGTTCTGCGCTGGACATCCCAAGGAAGGC
ATGATCGACCTCAAGAACAGGTTCAGGAAGAAGTGCTCACACCAGGGCTG
CATCAAGATCCCGTCGTTTGGCGTCGCGGGAATCACGAAGCGAGAGTTCT
GCGCCGCACATGCGGAGGAAGGCATGATCGACCTCAGGAACATGCACAGC
AAGAAGTGCTCACACCAGGGCTGCACCAAGATTCCGTCGTTCGGCGTCGC
GGGAAGCACGAAGCGAGAGTTCTGCGCAGCACATGCGGAGGAAGGCATGA
TCGACCTCAAGCACATGCACAGCAAGAAGTGCTCACACCAGGGCTGCACT
AAGATTCCGTCGTTTGGCGTCGCGGGAATCACGAAGCGAGAGTTCTGCGC
TGTACACGCCAAGAAAGGCATGGTGAACGTGAAGGACAGGCGCGAGGGGG
GTAGCACGTCCGTCAGCAGTGGCTCAGCGACCCCACCAAACCACTCGGGC
CTGCTATCGGCACTGCACACAGCTGGAGGCGGCAGCAGTAGTACCGTGCG
CCGCCAGCCATCAAACCGAGAGCGGAAATCCGACACTCACCTTCCTGCCC
CGCCATCGAACAGACGCAGCAATGCGACTGATACGGTGCGATTGGAGGAG
CCCGTTCAGAGTAACAGCGAAGCTGGGATGTCTCGTCTGCCCGTGGCGCC
CCCCACAAGTCAAGATCAAGCCCATTGTCAAGAGGTAAATCAAGACCCAG
GCGTCGTCGCGGGGAGCTCCTCGTCTTCCCTCTACCATTTAGGAGGCGAT
GACGTAATCACTACAACCGCCACCGTCAAATCGGAGGAGGAAGTGGTGCT
CTCATCTGGCGTGGTTGTCCCTGATGGCGCCTCGGGGGGGGAAGACGACA
CTGTTAGATGCCATGCTGATGGTACCGGGCGAGGGGGAAAGCGCAAAGGC
CGTGCCCTCCCGTCCTCCACTCAGATCACTACTGGTGGTTGTGCGTCATG
GGGCAAGAACAGTAGGCAGAGTCGCAGCAAGAGAGTTCGTGCAGCCCGCG
ACGACGGTGATGTGGTTGTCCTGGAGCCCGGAGATGTAGGAGCAGCAGCC
GCGGGAACAACCGGCGGTGGTGCTCCGGCAGGGGCGAGGGTCGCGGTCAA
GCCTGAACGTTGAGCATGATCGACCTCAAGAACAGGTTCAGGAAGAAGTG
CTCACACCAGGGCTGCATCAAGATCCCGTCGTTTGGCGTCGCGGGAATCA
CGAAGCGAGAGTTCTGCGCCGCACATGCGGAGGAAGGCATGATCGACCTC
AGGAACATGCACAGCAAGAAGTGCTCACACCAGGGCTGCACCAAGATTCC
GTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCAGCACATG
CGGAGGAAGGCATGATCGACCTCAAGCACATGCACAGCAAGAAGTGCTCA
CACCAGGGCTGCACTAAGATTCCGTCGTTTGGCGTCGCGGGAATCACGAA
GCGAGAGTTCTGCGCTGTACACGCCAAGAAAGGCATGGTGAACGTGAAGG
ACAGGCGCGAGGGGGGTAGCACGTCCGTCAGCAGTGGCTCAGCGACCCCA
CCAAACCACTCGGGCCTGCTATCGGCACTGCACACAGCTGGAGGCGGCAG
CAGTAGTACCGTGCGCCGCCAGCCATCAAACCGAGAGCGGAAATCCGACA
CTCACCTTCCTGCCCCGCCATCGAACAGACGCAGCAATGCGACTGATACG
GTGCGATTGGAGGAGCCCGTTCAGAGTAACAGCGAAGCTGGGATGTCTCG
TCTGCCCGTGGCGCCCCCCACAAGTCAAGATCAAGCCCATTGTCAAGAGG
TAAATCAAGACCCAGGCGTCGTCGCGGGGAGCTCCTCGTCTTCCCTCTAC
CATTTAGGAGGCGATGACGTAATCACTACAACCGCCACCGTCAAATCGGA
GGAGGAAGTGGTGCTCTCATCTGGCGTGGTTGTCCCTGATGGCGCCTCGG
GGGGGGAAGACGACACTGTTAGATGCCATGCTGATGGTACCGGGCGAGGG
GGAAAGCGCAAAGGCCGTGCCCTCCCGTCCTCCACTCAGATCACTACTGG
TGGTTGTGCGTCATGGGGCAAGAACAGTAGGCAGAGTCGCAGCAAGAGAG
TTCGTGCAGCCCGCGACGACGGTGATGTGGTTGTCCTGGAGCCCGGAGAT
GTAGGAGCAGCAGCCGCGGGAACAACCGGCGGTGGTGCTCCGGCAGGGGC
GAGGGTCGCGGTCAAGCCTGAACGTTGA
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