mRNA_L-elsbetiae_contig20314.6108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20314.6108.1
Unique NamemRNA_L-elsbetiae_contig20314.6108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.180e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVEAFGQKFATEVK+ACLSCVFDETFVIGLRNLDKD FEEGVIR
Sbjct:  391 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 441
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.640e-24
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVEAFGQK+ATEVK ACLSCVFDETFVIGLRNLDKD FEEGVIR
Sbjct:  448 GTSDPVVYVEAFGQKYATEVKAACLSCVFDETFVIGLRNLDKDEFEEGVIR 498
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.080e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVEAFGQKFATEV +  L+ VFDETFVI LRNLD+D F+EGV R
Sbjct:  688 GTSDPVVYVEAFGQKFATEVVKDRLNAVFDETFVINLRNLDQDDFKEGVFR 738
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A6H5L7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-16
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVEAFGQKFATEV +  L+ VFDETFVI LRN+D+D F+EGV R
Sbjct:  758 GTSDPVVYVEAFGQKFATEVVKDRLNAVFDETFVINLRNMDQDDFKEGVFR 808
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A812YP87_SYMMI (Myof protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YP87_SYMMI)

HSP 1 Score: 71.2 bits (173), Expect = 2.630e-13
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            G SDPVV + AFG+K ++ V++A L+CVFDE F+   RN+DKDVF EGVIR
Sbjct:  120 GLSDPVVTIHAFGEKQSSSVQRASLNCVFDELFIFNFRNMDKDVFSEGVIR 170
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A7S3JSY6_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSY6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.770e-13
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPV  +E FG+K  + V   CLSCVFDETF+I  RNLDKD+F+E  I+
Sbjct:  415 GTSDPVCVIECFGEKRTSSVHNDCLSCVFDETFIINKRNLDKDIFKESSIK 465
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A7S3HPR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPR4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.990e-11
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVE FGQK  T   ++  SCV+DE F+  ++NLDK+ F +G++R
Sbjct:  432 GTSDPVVYVECFGQKQNTICVKSVTSCVYDELFIFNMKNLDKETFADGLLR 482
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A7S1XRY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRY6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.550e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVI 150
            GTSDPVVYVE  G+K AT V     + VFDE F+I LRN+DK+ FEE VI
Sbjct:   29 GTSDPVVYVEVLGKKVATSVISKQNNPVFDERFIINLRNVDKEDFEEAVI 78
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A2P4XEC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEC0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-9
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVE FG+K  T VK+  LSC +D+  +   RNLDK   E G +R
Sbjct:  392 GTSDPVVYVEVFGEKQQTAVKKQVLSCFWDDLLIFPFRNLDKSEVEMGYVR 442
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BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Match: A0A0W8D719_PHYNI (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D719_PHYNI)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-9
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVIR 153
            GTSDPVVYVE FG+K  T VK+  LSC +D+  +   RNLDK   E G +R
Sbjct:  392 GTSDPVVYVEVFGEKQQTAVKKQVLSCFWDDLLIFPFRNLDKSEVEMGYVR 442
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20314.6108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LF91_ECTSI1.180e-2496.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL55_9PHAE7.640e-2494.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI6.080e-1778.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7Z1_9PHAE1.130e-1676.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812YP87_SYMMI2.630e-1360.78Myof protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3JSY6_9STRA2.770e-1360.78Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3HPR4_9STRA2.990e-1154.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1XRY6_9STRA3.550e-1062.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2P4XEC0_9STRA1.270e-954.90Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0W8D719_PHYNI1.280e-954.90Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20314contigL-elsbetiae_contig20314:474..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D8LF91
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.202536-CDS-L-elsbetiae_contig20314:473..6291622815839.202536-CDS-L-elsbetiae_contig20314:473..629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20314 474..629 +
1691683137.5298162-CDS-L-elsbetiae_contig20314:473..6291691683137.5298162-CDS-L-elsbetiae_contig20314:473..629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20314 474..629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20314.6108.1prot_L-elsbetiae_contig20314.6108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20314 474..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20314.6108.1

>prot_L-elsbetiae_contig20314.6108.1 ID=prot_L-elsbetiae_contig20314.6108.1|Name=mRNA_L-elsbetiae_contig20314.6108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
GTSDPVVYVEAFGQKFATEVKQACLSCVFDETFVIGLRNLDKDVFEEGVI
R*
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mRNA from alignment at L-elsbetiae_contig20314:474..629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20314.6108.1 ID=mRNA_L-elsbetiae_contig20314.6108.1|Name=mRNA_L-elsbetiae_contig20314.6108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig20314:474..629+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACGTCTGACCCGGTGGTGTATGTCGAGGCGTTCGGGCAGAAGTTTGC
CACCGAGGTAAAGCAGGCGTGCCTCAGCTGCGTGTTCGACGAGACCTTCG
TCATCGGCCTCAGGAACCTAGACAAGGACGTCTTCGAGGAAGGAGTAATC
AGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20314:474..629+

>mRNA_L-elsbetiae_contig20314.6108.1 ID=mRNA_L-elsbetiae_contig20314.6108.1|Name=mRNA_L-elsbetiae_contig20314.6108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig20314:474..629+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACGTCTGACCCGGTGGTGTATGTCGAGGCGTTCGGGCAGAAGTTTGC
CACCGAGGTAAAGCAGGCGTGCCTCAGCTGCGTGTTCGACGAGACCTTCG
TCATCGGCCTCAGGAACCTAGACAAGGACGTCTTCGAGGAAGGAGTAATC
AGGTAAGGCACGTCTGACCCGGTGGTGTATGTCGAGGCGTTCGGGCAGAA
GTTTGCCACCGAGGTAAAGCAGGCGTGCCTCAGCTGCGTGTTCGACGAGA
CCTTCGTCATCGGCCTCAGGAACCTAGACAAGGACGTCTTCGAGGAAGGA
GTAATCAGGTAA
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