mRNA_L-elsbetiae_contig20309.6107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20309.6107.1
Unique NamemRNA_L-elsbetiae_contig20309.6107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20309.6107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20309contigL-elsbetiae_contig20309:894..2286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size480
Cds size480
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20309.6107.1prot_L-elsbetiae_contig20309.6107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20309 894..2286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.1235335-CDS-L-elsbetiae_contig20309:893..9981622815839.1235335-CDS-L-elsbetiae_contig20309:893..998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 894..998 -
1691683137.4798634-CDS-L-elsbetiae_contig20309:893..9981691683137.4798634-CDS-L-elsbetiae_contig20309:893..998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 894..998 -
1622815839.1352496-CDS-L-elsbetiae_contig20309:1192..13121622815839.1352496-CDS-L-elsbetiae_contig20309:1192..1312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 1193..1312 -
1691683137.4887152-CDS-L-elsbetiae_contig20309:1192..13121691683137.4887152-CDS-L-elsbetiae_contig20309:1192..1312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 1193..1312 -
1622815839.1457944-CDS-L-elsbetiae_contig20309:1513..15971622815839.1457944-CDS-L-elsbetiae_contig20309:1513..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 1514..1597 -
1691683137.4999366-CDS-L-elsbetiae_contig20309:1513..15971691683137.4999366-CDS-L-elsbetiae_contig20309:1513..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 1514..1597 -
1622815839.1556642-CDS-L-elsbetiae_contig20309:1845..19231622815839.1556642-CDS-L-elsbetiae_contig20309:1845..1923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 1846..1923 -
1691683137.5097055-CDS-L-elsbetiae_contig20309:1845..19231691683137.5097055-CDS-L-elsbetiae_contig20309:1845..1923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 1846..1923 -
1622815839.1660833-CDS-L-elsbetiae_contig20309:2193..22861622815839.1660833-CDS-L-elsbetiae_contig20309:2193..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 2194..2286 -
1691683137.5191262-CDS-L-elsbetiae_contig20309:2193..22861691683137.5191262-CDS-L-elsbetiae_contig20309:2193..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20309 2194..2286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20309.6107.1

>prot_L-elsbetiae_contig20309.6107.1 ID=prot_L-elsbetiae_contig20309.6107.1|Name=mRNA_L-elsbetiae_contig20309.6107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
QTCPFRGDEGSSRVFTHRLHLGDPSSAKQDQKQLGDTINLSGDTDDSTGG
HQLPRRSKQLQAGYVAAPNILSTILGDLTPAQQHEVERELWASGGETDVV
TPRAVYNLHSGKTKSTIECNSRNIKRSREGQWLTDEVMNYYFALLREANQ
KVSHIGDGV*
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mRNA from alignment at L-elsbetiae_contig20309:894..2286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20309.6107.1 ID=mRNA_L-elsbetiae_contig20309.6107.1|Name=mRNA_L-elsbetiae_contig20309.6107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1393bp|location=Sequence derived from alignment at L-elsbetiae_contig20309:894..2286- (Laminarionema elsbetiae ELsaHSoW15)
CAAACCTGCCCTTTCAGGGGCGATGAAGGCAGCAGCAGGGTTTTTACGCA
CCGCCTTCACCTCGGCGACCCATCTTCAGCAAAACAGGACCAGGCAAGTG
GAACTGGGCGTGTGTCGGATTTTGAGATGAAGTCGGGAGCACCATAACAA
GTGTAGTAGGTGCAAGATCGGGCGTTATTGAGCCCAATTTAATCAGAGAG
TTTTCGAACAAACACGGTGTATCGTTGTTTAATCCTTGGGTGGAGAGGCT
TGAAACTAAACACCCAAATACATTGTGCGACATCCGGCGAAGGCAGCTTA
CTGGACTTAATATCGATCTTTCTTGCAATAAACATCAAATCCTTTCCCGA
TGCATTACCTCAGAAACAACTGGGGGACACGATTAACCTCAGCGGCGATA
CAGATGACTCGACGGGCGGGCACCAACTTCCCCGGAGATCGGTAAAAATA
GAAATAAATAGAAGACATAAATAGGACCATTAGTTGGTGTTTCTGCAGGC
CTTTGCCTCTTTTTTTCTCTTTGGTCACATAGGAATGGTATTGTGCGATG
CCATTGTTTTATTTGGGCGCCGTAGTATTGTTATTTCAACCCAAAAAGCA
CATTTATGGCCCAAATATTGTTTTTTGGCCAAGCGGTTTTCAAATTTTGG
TATTGGAAAATGCTAACTGCTCCCCACGTATTGCAACAGAAACAATTACA
GGCTGGGTATGTGGCGGCGCCCAATATCCTGTCGACGATTCTAGGCGACC
TAACACCCGCTCAGCAGCATGAGGTGCGAACGCGCCTCAACTTGCAGTTT
CCTAGCATGCGTCTTTTGGATGGATAAATAGCGTGTATCAGCAACTGGGA
CGATGCGATCCTTGTTGGTACATGATGCATCGTGCAAACCCAAACGGGCT
AGCCGCCGACAGTTGGTGACGCTAAATTACCTATTACGTATTTTCCGTAC
TGCCACTGCTCTCCGATACTACAGGTGGAACGGGAGCTTTGGGCGAGCGG
GGGAGAGACTGATGTTGTGACCCCGAGGGCAGTTTACAACCTTCACAGTG
GGAAAACTAAGTCGACAATCGAGTGTAATTCAAGAAACATAAAGGTCAGA
CTTCAAAGGTTGATGTCTCCATAAATCCAGCGCTGTTATGCATGCGCATT
GGCCCGAACACCCCCCCCCCCTTCTCCTGCGGGGGTATTGGGTTCGATCA
ACAGAGCGCTGTGATGCGCATTGCCCCGACAACCCCCCCCCCGCGCGCGC
CCCCCTTCTCCTGCGGGGATATTTGTTTCGACCAGCAGAGGTCACGCGAA
GGCCAGTGGCTCACTGATGAAGTGATGAACTACTACTTCGCCCTCTTGAG
AGAAGCAAACCAGAAGGTGAGTCATATCGGTGATGGAGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20309:894..2286-

>mRNA_L-elsbetiae_contig20309.6107.1 ID=mRNA_L-elsbetiae_contig20309.6107.1|Name=mRNA_L-elsbetiae_contig20309.6107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig20309:894..2286- (Laminarionema elsbetiae ELsaHSoW15)
CAAACCTGCCCTTTCAGGGGCGATGAAGGCAGCAGCAGGGTTTTTACGCA
CCGCCTTCACCTCGGCGACCCATCTTCAGCAAAACAGGACCAGCAAACCT
GCCCTTTCAGGGGCGATGAAGGCAGCAGCAGGGTTTTTACGCACCGCCTT
CACCTCGGCGACCCATCTTCAGCAAAACAGGACCAGAAACAACTGGGGGA
CACGATTAACCTCAGCGGCGATACAGATGACTCGACGGGCGGGCACCAAC
TTCCCCGGAGATCGAAACAACTGGGGGACACGATTAACCTCAGCGGCGAT
ACAGATGACTCGACGGGCGGGCACCAACTTCCCCGGAGATCGAAACAATT
ACAGGCTGGGTATGTGGCGGCGCCCAATATCCTGTCGACGATTCTAGGCG
ACCTAACACCCGCTCAGCAGCATGAGAAACAATTACAGGCTGGGTATGTG
GCGGCGCCCAATATCCTGTCGACGATTCTAGGCGACCTAACACCCGCTCA
GCAGCATGAGGTGGAACGGGAGCTTTGGGCGAGCGGGGGAGAGACTGATG
TTGTGACCCCGAGGGCAGTTTACAACCTTCACAGTGGGAAAACTAAGTCG
ACAATCGAGTGTAATTCAAGAAACATAAAGGTGGAACGGGAGCTTTGGGC
GAGCGGGGGAGAGACTGATGTTGTGACCCCGAGGGCAGTTTACAACCTTC
ACAGTGGGAAAACTAAGTCGACAATCGAGTGTAATTCAAGAAACATAAAG
AGGTCACGCGAAGGCCAGTGGCTCACTGATGAAGTGATGAACTACTACTT
CGCCCTCTTGAGAGAAGCAAACCAGAAGGTGAGTCATATCGGTGATGGAG
TGTAGAGGTCACGCGAAGGCCAGTGGCTCACTGATGAAGTGATGAACTAC
TACTTCGCCCTCTTGAGAGAAGCAAACCAGAAGGTGAGTCATATCGGTGA
TGGAGTGTAG
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