mRNA_L-elsbetiae_contig2030.6106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2030.6106.1
Unique NamemRNA_L-elsbetiae_contig2030.6106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A397FQB5_9STRA (Glyco_transf_24 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FQB5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.620e-57
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 FSRLGGCAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            F R+     LR+IY+ LS DPNSLSNLDQDLPNYAQ Q+PIFSLPQEWLWCESWCSD SKAEAKTIDLCNNP+HKEPKLDMAKRVISG LF ESW++LDAEV+A+E
Sbjct:   27 FKRMAAGDSLRAIYDQLSADPNSLSNLDQDLPNYAQHQIPIFSLPQEWLWCESWCSDESKAEAKTIDLCNNPKHKEPKLDMAKRVISGDLFPESWLQLDAEVKAAE 132
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A485KRL7_9STRA (Aste57867_10708 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRL7_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.950e-56
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    1 FSRLGGCAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASEDSRLA 333
            F R+     LR+IY+ LS DPNSLSNLDQDLPNYAQ Q+PIFSLPQEWLWCESWCSD SKA+AKTIDLCNNP+HKEPKL+MAKRVISG LF ESW+ELDAEV+ +E   +A
Sbjct:   51 FKRMAAGDSLRAIYDQLSADPNSLSNLDQDLPNYAQHQIPIFSLPQEWLWCESWCSDDSKAQAKTIDLCNNPKHKEPKLEMAKRVISGELFPESWLELDAEVKQAEARYVA 161
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A418DH81_9STRA (Glyco_transf_24 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DH81_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.990e-53
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 FSRLGGCAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            F R+     LR+IY+ LS DPNSLSNLDQDLPNYAQ Q+PIFSLPQEWLWCESWCSD SKAEAKTIDLCNNP+HKEPKLDMAKRVISG LF ESW++LDAEV+A+E
Sbjct:  400 FKRMAAGDSLRAIYDQLSADPNSLSNLDQDLPNYAQHQIPIFSLPQEWLWCESWCSDESKAEAKTIDLCNNPKHKEPKLDMAKRVISGDLFPESWLQLDAEVKAAE 505
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A7S3MEZ4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEZ4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.380e-51
Identity = 76/96 (79.17%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:   28 LRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRAS 315
            LR+IY+ LS+DPNSL+NLDQDLPNYAQ QVPIFSLPQEWLWCESWCSD SK+ AKTIDLCNNP HKEPKLDMA+RV+SG LF +SWV+LD E+R +
Sbjct:   84 LRAIYDQLSRDPNSLANLDQDLPNYAQHQVPIFSLPQEWLWCESWCSDDSKSTAKTIDLCNNPLHKEPKLDMARRVVSGELFNQSWVQLDDEIRTT 179
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A7S0GH78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GH78_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.140e-51
Identity = 76/98 (77.55%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   25 QLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            +LR  Y  LS DPNSLSNLDQDLPNYAQ +VPIFSLPQEWLWCESWCSD +K ++KTIDLCNNP HKEPKL MAKRVI G LF+ESWVELD EV++ E
Sbjct:   28 KLRGTYQQLSADPNSLSNLDQDLPNYAQHEVPIFSLPQEWLWCESWCSDATKPQSKTIDLCNNPMHKEPKLTMAKRVIQGELFDESWVELDEEVKSYE 125
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: B7G4N6_PHATC (UDP-glucose:glycoprotein glucosyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4N6_PHATC)

HSP 1 Score: 168 bits (426), Expect = 2.250e-51
Identity = 77/100 (77.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:   25 QLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASEDS 324
            QLRSIY  LS +P+SL+NLDQDLPNYAQ QVPIFSLPQEWLWCESWCSD +K  AKTIDLCNNP+HKEPK+ MAKR++SG LF ESWVELDAEV   E +
Sbjct:   61 QLRSIYQQLSGNPDSLANLDQDLPNYAQHQVPIFSLPQEWLWCESWCSDETKGTAKTIDLCNNPEHKEPKVSMAKRIVSGPLFNESWVELDAEVEMYEQA 160
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A7S3Y089_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y089_HETAK)

HSP 1 Score: 173 bits (439), Expect = 2.340e-51
Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:   25 QLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            QLR +Y++LS+DPNSL+NLDQDLPNYAQ  +PI SLPQEWLWCESWCSD SKA AKTIDLCNNPQHKEPKLDMAKRVI+G LF+ESW+ELD EV+  E
Sbjct:  218 QLRGVYDSLSRDPNSLANLDQDLPNYAQHAIPIHSLPQEWLWCESWCSDASKAAAKTIDLCNNPQHKEPKLDMAKRVIAGDLFQESWIELDDEVKVIE 315
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BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A397BLN9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BLN9_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.700e-51
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 FSRLGGCAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            F R+     LR+IY+ LS DPNSLSNLDQDLPNYAQ Q+PIFSLPQEWLWCESWCSD SKAEAKTIDLCNNP+HKEPKLDMAKRVISG LF ESW++LDAEV+A+E
Sbjct: 1076 FKRMAAGDSLRAIYDQLSADPNSLSNLDQDLPNYAQHQIPIFSLPQEWLWCESWCSDESKAEAKTIDLCNNPKHKEPKLDMAKRVISGDLFPESWLQLDAEVKAAE 1181
[Close]
BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: W4FI22_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FI22_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.740e-51
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 FSRLGGCAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            F R+     LR+IY+ LS DPNSLSNLDQDLPNYAQ Q+PIFSLPQEWLWCESWCSD SKAEAKTIDLCNNP+HKEPKLDMAKRVISG LF ESW++LDAEV+A+E
Sbjct: 1428 FKRMAAGDSLRAIYDQLSADPNSLSNLDQDLPNYAQHQIPIFSLPQEWLWCESWCSDESKAEAKTIDLCNNPKHKEPKLDMAKRVISGDLFPESWLQLDAEVKAAE 1533
[Close]
BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Match: A0A397D3Q5_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D3Q5_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.250e-51
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   19 CAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLWCESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDAEVRASE 318
            C  LR+IY+ LS DPNSLSNLDQDLPNYAQ Q+PIFSLPQEWLWCESWCSD SKAEAKTIDLCNNP+HKEPKLDMAKRVISG LF ESW++LDAEV+A+E
Sbjct:  890 CDSLRAIYDQLSADPNSLSNLDQDLPNYAQHQIPIFSLPQEWLWCESWCSDESKAEAKTIDLCNNPKHKEPKLDMAKRVISGDLFPESWLQLDAEVKAAE 989
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2030.6106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397FQB5_9STRA1.620e-5780.19Glyco_transf_24 domain-containing protein n=2 Tax=... [more]
A0A485KRL7_9STRA5.950e-5675.68Aste57867_10708 protein n=2 Tax=Aphanomyces stella... [more]
A0A418DH81_9STRA2.990e-5380.19Glyco_transf_24 domain-containing protein (Fragmen... [more]
A0A7S3MEZ4_9STRA1.380e-5179.17Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0GH78_9STRA2.140e-5177.55Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
B7G4N6_PHATC2.250e-5177.00UDP-glucose:glycoprotein glucosyltransferase n=2 T... [more]
A0A7S3Y089_HETAK2.340e-5179.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A397BLN9_9STRA2.700e-5180.19Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4FI22_9STRA2.740e-5180.19Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397D3Q5_9STRA3.250e-5184.00Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2030contigL-elsbetiae_contig2030:12162..13717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue4.5e-42
Seed eggNOG ortholog157072.XP_008870411.1
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UDP-glucose:glycoprotein glucosyltransferase activity
EggNOG OGsKOG1879@1,KOG1879@2759
COG Functional cat.M
CAZyGT24
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons3
Model size345
Cds size345
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2030.6106.1prot_L-elsbetiae_contig2030.6106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2030 12162..13717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.0674348-CDS-L-elsbetiae_contig2030:12161..122871622815839.0674348-CDS-L-elsbetiae_contig2030:12161..12287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 12162..12287 -
1691683137.4485133-CDS-L-elsbetiae_contig2030:12161..122871691683137.4485133-CDS-L-elsbetiae_contig2030:12161..12287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 12162..12287 -
1622815839.0779235-CDS-L-elsbetiae_contig2030:12905..130101622815839.0779235-CDS-L-elsbetiae_contig2030:12905..13010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 12906..13010 -
1691683137.4621391-CDS-L-elsbetiae_contig2030:12905..130101691683137.4621391-CDS-L-elsbetiae_contig2030:12905..13010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 12906..13010 -
1622815839.0908406-CDS-L-elsbetiae_contig2030:13603..137171622815839.0908406-CDS-L-elsbetiae_contig2030:13603..13717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 13604..13717 -
1691683137.4708123-CDS-L-elsbetiae_contig2030:13603..137171691683137.4708123-CDS-L-elsbetiae_contig2030:13603..13717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 13604..13717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2030.6106.1

>prot_L-elsbetiae_contig2030.6106.1 ID=prot_L-elsbetiae_contig2030.6106.1|Name=mRNA_L-elsbetiae_contig2030.6106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
FSRLGGCAQLRSIYNTLSQDPNSLSNLDQDLPNYAQVQVPIFSLPQEWLW
CESWCSDVSKAEAKTIDLCNNPQHKEPKLDMAKRVISGALFEESWVELDA
EVRASEDSRLAREA*
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mRNA from alignment at L-elsbetiae_contig2030:12162..13717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2030.6106.1 ID=mRNA_L-elsbetiae_contig2030.6106.1|Name=mRNA_L-elsbetiae_contig2030.6106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1556bp|location=Sequence derived from alignment at L-elsbetiae_contig2030:12162..13717- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCTCGTCTCGGCGGCTGCGCGCAGCTGCGAAGCATTTACAACACTCT
GAGCCAAGACCCAAACTCCCTGTCCAACCTGGATCAAGACCTCCCCAACT
ACGCCCAGGTCCAGGTGAGAGTAAGGCGGAGAGTTGGGGGGGTTCGATGC
AACACTATGTAGCCCTACTAACACCTCCTGCGAGGCTCGCACGCGAGGAG
AGAAGGTACGTAGACTCTGACTCTGCATGACTGGCGCGAACCCGAAACCC
AACCAAACGTTTCAAGGAGAGGAGGGTGTTGGTAGGCTGCCTGTAGCCAA
CGGACGTGATCCAGTCGCATATGTAAGAAGGACGGTCGTCATGCGTCGCG
CTTCTGATGCTATTTCCGAAGAGCCTTGGCCTGCGTCCTTCGTTGCAGCT
CTTTATTAGCGCGCGCGTGTGCTTTGCCCGCGTGCTGTGCATGTCTCCCC
ATGTTTACCGCAAGCACGAGTACCCAAGCACACGCAAGTACCTACACACG
CACACACCGCCCCCCCCCGCCCGCTCTTTTTAATCGCTGTATACCTACTT
AGCCGCACATTCAAGGAGCCCCTTCGCCCCCCCCCCGCTGGTTGGACGGT
TCTTAATTTTCTTCGGCGAAGAAGAGATCGTATTGAAGCCACTCATCACT
GCCTGTGGCAACGTGTTGTTTGTTTCCCGGGGCCTCTCTTCCCGCCGCTG
CCACCAGGTGCCTATATTCTCCTTACCGCAGGAGTGGCTGTGGTGCGAGT
CGTGGTGCAGCGACGTCAGCAAGGCCGAGGCCAAGACCATCGACCTCTGC
AACAACCCTCAGGTACTCTCGTGCTTCCGGGCGTGCGGCATTTCCCTTCC
TAGGGTTTGGCCGCCGCCCGTCTGTGTGTGTTCCCCCTTGCTTTGCGGCC
GATATGTTTTGGTCGATTCGCTTTCGCTGATCCCCTCTCCTTCGGCTGGT
TGATGGGCTAGGATGTTGCTCGACGATTGGTGAGTTGGCTGAAGGCAAGA
CTATCTGCATGCACAAAGCAAGACGTCAGGTGTATATCGGGCTTTCCGGC
TCTTTTTTGCAAGTCCTTACCCATGGTGTGGCTTCGCCATGCTTGCCATT
CGCGCGCGTGCCGTGCTATGTAGCCATGACTGATGTGATTGTCACGTGGC
TTGGTCGGCTACAGAAGTTGCGCGGACATTCCCAGCTTGAGCAACCTTAC
AACACAAAATAGATGAAAGAGAACCGCACTTGGCGATAATTCGACGCGCG
GCTCTCCACTTTCTTTGCGGGATGCAAAACGCTCGCGAAACTGCCGTTCC
CCGCACCCAGTGGAGCAATGAACCCAAAACAAGGGACATCTGTTGGAGTC
CTGTATTTTGATGGTTTGGGCACGCTTTCCCCCCACAACCCTTTACCCGA
CCGTGCACCCCCACGCGATCAAATTGACAGCACAAGGAGCCCAAGCTGGA
CATGGCAAAGCGCGTAATCAGCGGGGCCCTGTTCGAAGAGAGCTGGGTCG
AGCTCGACGCCGAAGTAAGGGCGTCCGAAGATTCGCGATTAGCTCGAGAA
GCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2030:12162..13717-

>mRNA_L-elsbetiae_contig2030.6106.1 ID=mRNA_L-elsbetiae_contig2030.6106.1|Name=mRNA_L-elsbetiae_contig2030.6106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig2030:12162..13717- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCTCGTCTCGGCGGCTGCGCGCAGCTGCGAAGCATTTACAACACTCT
GAGCCAAGACCCAAACTCCCTGTCCAACCTGGATCAAGACCTCCCCAACT
ACGCCCAGGTCCAGTTTTCTCGTCTCGGCGGCTGCGCGCAGCTGCGAAGC
ATTTACAACACTCTGAGCCAAGACCCAAACTCCCTGTCCAACCTGGATCA
AGACCTCCCCAACTACGCCCAGGTCCAGGTGCCTATATTCTCCTTACCGC
AGGAGTGGCTGTGGTGCGAGTCGTGGTGCAGCGACGTCAGCAAGGCCGAG
GCCAAGACCATCGACCTCTGCAACAACCCTCAGGTGCCTATATTCTCCTT
ACCGCAGGAGTGGCTGTGGTGCGAGTCGTGGTGCAGCGACGTCAGCAAGG
CCGAGGCCAAGACCATCGACCTCTGCAACAACCCTCAGCACAAGGAGCCC
AAGCTGGACATGGCAAAGCGCGTAATCAGCGGGGCCCTGTTCGAAGAGAG
CTGGGTCGAGCTCGACGCCGAAGTAAGGGCGTCCGAAGATTCGCGATTAG
CTCGAGAAGCCTGACACAAGGAGCCCAAGCTGGACATGGCAAAGCGCGTA
ATCAGCGGGGCCCTGTTCGAAGAGAGCTGGGTCGAGCTCGACGCCGAAGT
AAGGGCGTCCGAAGATTCGCGATTAGCTCGAGAAGCCTGA
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