mRNA_L-elsbetiae_contig20290.6100.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20290.6100.1
Unique NamemRNA_L-elsbetiae_contig20290.6100.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20290.6100.1 vs. uniprot
Match: A0A6H5L4I1_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4I1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.560e-8
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 VELCGGNQMPTSVAASLDALTAGDASAAVLKRDLGELMLRPL 126
            VELCGG++M  S+AAS+D LTAGD S AV KRD+GELMLRPL
Sbjct:  493 VELCGGDEMAISIAASIDGLTAGDESVAVFKRDIGELMLRPL 534
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BLAST of mRNA_L-elsbetiae_contig20290.6100.1 vs. uniprot
Match: A0A6H5JTZ2_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTZ2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.050e-8
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    4 ELCGGNQMPTSVAASLDALTAGDASAAVLKRDLGELMLRPL 126
            ELCGG+++  S+AAS+DALTAGD SAAV KRD+GEL+LRPL
Sbjct:  444 ELCGGDEIAVSIAASIDALTAGDESAAVFKRDVGELVLRPL 484
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20290.6100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4I1_9PHAE2.560e-873.81CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5JTZ2_9PHAE8.050e-873.17CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20290contigL-elsbetiae_contig20290:547..1296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size750
Cds size105
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20290.6100.1prot_L-elsbetiae_contig20290.6100.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20290 571..675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.1880426-UTR-L-elsbetiae_contig20290:546..5701622815838.1880426-UTR-L-elsbetiae_contig20290:546..570Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20290 547..570 +
1691683136.7232718-UTR-L-elsbetiae_contig20290:546..5701691683136.7232718-UTR-L-elsbetiae_contig20290:546..570Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20290 547..570 +
1622815838.2127237-UTR-L-elsbetiae_contig20290:675..12961622815838.2127237-UTR-L-elsbetiae_contig20290:675..1296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20290 676..1296 +
1691683136.7414858-UTR-L-elsbetiae_contig20290:675..12961691683136.7414858-UTR-L-elsbetiae_contig20290:675..1296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20290 676..1296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.1985142-CDS-L-elsbetiae_contig20290:570..6751622815838.1985142-CDS-L-elsbetiae_contig20290:570..675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20290 571..675 +
1691683136.7327814-CDS-L-elsbetiae_contig20290:570..6751691683136.7327814-CDS-L-elsbetiae_contig20290:570..675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20290 571..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20290.6100.1

>prot_L-elsbetiae_contig20290.6100.1 ID=prot_L-elsbetiae_contig20290.6100.1|Name=mRNA_L-elsbetiae_contig20290.6100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
MPTSVAASLDALTAGDASAAVLKRDLGELMLRPL*
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mRNA from alignment at L-elsbetiae_contig20290:547..1296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20290.6100.1 ID=mRNA_L-elsbetiae_contig20290.6100.1|Name=mRNA_L-elsbetiae_contig20290.6100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig20290:547..1296+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAACTTTGCGGCGGCAACCAAATGCCAACGTCTGTCGCCGCTTCGCT
CGACGCGCTGACCGCTGGTGACGCGTCGGCCGCCGTTCTCAAACGTGATC
TCGGCGAGCTCATGCTTCGCCCCCTTTAGGATCTACGTAGCAACAGAGAT
AGTAACACCGCCGCAGGCTTCAACCAAGGCCCACCAGTGAACTCCGAACG
AGCGTTCGCCTCCGTAATGAAATAAAGGCTGCGATGCAGAAGGAGCTCCA
AAGCCTCAAACATCACCAGGTAGCCGTCTAGTCGCGATCAACACGGCACG
CTTCCACCAGAAGAAGCTCCGATTGGTTCTGTCTGGGTGTTCAAGGTTGA
GCCGGGCGGTATCTTCAAGGCGTCACGGCATCGACTGTGGTGAAACGTTC
ACTCCTACCTGTCGCATCAGCAGCCAGCGCAGTTTTGTGCATCGCTGCTA
AGGTTATGATACGCATGAAGTCTCTTGATTTACACAGAAGTATCATTGCG
CTGCTGAGTTTGTAATACGCATGGAGTAGTTTAGGTCTCTTGATCTGTAC
AGAAAAGCCATTTGAATCAGATGTGTGCTTATTGGGCCTGACATGGCCAC
CATAGCTCAAGCGGAGGGCGTATGTATGCAGCGAGATCGTGATTTATACA
TAATAGACTGAGATACCTGTATGCAGCACGGAGGCAAGACTGCGAATATT
GATTTGGAGGTGAAAGAGTTCAAAATGGTTCGGGGGCATGAGTGACAAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20290:547..1296+

>mRNA_L-elsbetiae_contig20290.6100.1 ID=mRNA_L-elsbetiae_contig20290.6100.1|Name=mRNA_L-elsbetiae_contig20290.6100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig20290:547..1296+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAACGTCTGTCGCCGCTTCGCTCGACGCGCTGACCGCTGGTGACGC
GTCGGCCGCCGTTCTCAAACGTGATCTCGGCGAGCTCATGCTTCGCCCCC
TTTAGATGCCAACGTCTGTCGCCGCTTCGCTCGACGCGCTGACCGCTGGT
GACGCGTCGGCCGCCGTTCTCAAACGTGATCTCGGCGAGCTCATGCTTCG
CCCCCTTTAG
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