mRNA_L-elsbetiae_contig2018.6068.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2018.6068.1 vs. uniprot
Match: D7FIG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI) HSP 1 Score: 917 bits (2369), Expect = 1.510e-310 Identity = 537/899 (59.73%), Postives = 644/899 (71.64%), Query Frame = 1 Query: 40 GLDDVNWSDDDALDAMVDDIGREVDGKRVSKAQAKSIEKMTEARVKFEMHPAFPPEDCPAAVRSAWMQMTPKDRRKNFVLYEIEQCRSVPMPKLLQLIKLLEGPGPAVQRATLDTVVNELVQEGRIQRKTAPVPKL---RGRCPLKMFGNGDMALHADAKTDPKSMAAYAENFCALEDAVQRETSRRRTAKHSGEYYSWNASNSPERFLVYKRKMHRTMILHRELLRCLPKRPGHRVGSRAIDLDRVILDTPLSTFLTMFGYPPDNLHTQEMYTVLKKAEVRKATIRQAPVAIWELMRTVPWYKEALTSSLKILHEMRVLTATDPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVGAAGAATGDPFAYLHDTAKEIQPMST------------GAGGSAAIDKFHKDMAAAAAARRLALKHAKESPPANQYGPNRFSNESCRGLRRDKQASRPAARSAAAEALLREKSPSGEMKMGLGWAVLHVDLVVYTEDPRRSPPKRVTQHLEWSNFWSTYQVFGTGRRTADLANEDGLARETLGIADKVAPVPHALAPWLLEKARTKRFFFCC*WGVEGNEKEDR---NRWHRAKMLWTEEQDMMLIMAVKRYEPEPTYANSKPKPNGPGR--CRNEYKIALRPVAESVGKSADAAWRRYSNVAEVYNKHAPPGQELPLPV---LHKKKRTLQEPYDA-------------KTIANKKKGRRTGMLKAAGQTGFGTSFGHLQFQTSDLNESRMKAREEAAIAKAAGFEWANEEGSWDEDGRGGGYLPRHFSRWGWTMEELAAFTAVRQLLLVPEERFDPKQALERMQAFRAPTLQKAYRSLLAMEQIDISKSAWAANDHSVHDSLDHEVYKMIGRHGTNLMSRGVTAAGSMSALGLA 2628 GL DVNWSDDD LDAMVDDIGREVD + + A AKS++K+ RVKFEM+P +PPE C A R AW+QMTPKDRRK+FVL+E+ C+S+P+ K++QLIKLLEGPGP +Q+ATLDTVV ELVQEGRI+ TAP P+ RGR +K FG+G+M L DAKTDP+S+A YAENF A+E AV RE++R + + G YSW+ SPERFL+YKRKMHRTMILHRELLRCL + PGHRVGSRA+DLDRVILDT LSTF+TMFG PP+ LH++EMY VLKKAE +KATIRQAP AIWE+MRTVPWYKEAL S+L+ LH+MR+LT D P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + DPFAY H TA ++ P+ST G GSAAIDKFHK + AA AR+ AL QY + ++ RG+ RDK+A RSAAAEALLREKSP E +MGLGWAVLHVD+V+YTED + P+RV H++WSNFW+TYQ FGTG+R +LA D + LG+ ++VA V H LA WLL+KAR WGV+ +E E+ NRWH AK LWT EQDM LI+AVK + P+PTY NSKP +GPGR + + A++PVA+ VGKSA+A WRRY N+A K+A G+ LPLP KKR+L D GRRTG+L G GHLQF+ S+LNESR KAREEAA+AKAAGFEW NEE SW+EDGR GG LPR F +W WT EEL A AVRQLLLVP RF+P QALERM+ FR PTLQKAYRSL+A QIDI+++AWAAND+SV DS+DHEVYKM+GRHG ++SRG+ AAG + ALG+A Sbjct: 418 GLGDVNWSDDDELDAMVDDIGREVD-EAAAAAAAKSLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQPERWAWRGR--MKTFGHGEMVLLPDAKTDPESLAEYAENFYAVETAVHRESTRIKAGERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLTRLPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAESKKATIRQAPRAIWEIMRTVPWYKEALMSTLQTLHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPSSLPGEDPFAYRHATA-QVVPISTDETTGKAVAVSGGGDGSAAIDKFHKAVEAARVARQDAL----------QYSRTPVARDTTRGISRDKKA-----RSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDKSMAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAKHDSVMNVALGVTEEVAQVAHPLASWLLKKARVPHLTNPKEWGVDDDEPEEEEEVNRWHWAKKLWTAEQDMALILAVKNFLPKPTYPNSKP--SGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRTRNKKRSLDNEDDGGXXXXXXXXXXXXXXXXXXXXGRRTGLLAIQGPLMM-ADLGHLQFRASELNESRKKAREEAALAKAAGFEWVNEENSWEEDGRAGGVLPRPFDKWAWTTEELEALVAVRQLLLVPAARFNPAQALERMRVFRPPTLQKAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGKGMVSRGIVAAGRLHALGIA 1294
BLAST of mRNA_L-elsbetiae_contig2018.6068.1 vs. uniprot
Match: A0A6H5JZA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE) HSP 1 Score: 737 bits (1903), Expect = 9.160e-241 Identity = 473/896 (52.79%), Postives = 575/896 (64.17%), Query Frame = 1 Query: 43 LDDVNWSDDDALDAMVDDIGREVDGKRVSKAQAKSIEKMTEARVKFEMHPAFPPEDCPAAVRSAWMQMTPKDRRKNFVLYEIEQCRSVPMPKLLQLIKLLEGPGPAVQRATLDTVVNELVQEGRIQRKTAPVPKL---RGRCPLKMFGNGDMALHADAKTDPKSMAAYAENFCALEDAVQRETSRRRTAKHSGEYYSWNASNSPERFLVYKRKMHRTMILHRELLRCLPKRPGHRVGSRAIDLDRVILDTPLSTFLTMFGYPPDNLHTQEMYTVLKKAEVRKATIRQAPVAIWELMRTVPWYKEALTSSLKILHEMRVLTATDPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVGAAGAATGDPFAYLHDTAKEIQPMST------------GAGGSAAIDKFHKDMAAAAAARRLALKHAKESPPANQYGPNRFSNESCRGLRRDKQASRPAARSAAAEALLREKSPSGEMKMGLGWAVLHVDLVVYTEDPRRSPPKRVTQHLEWSNFWSTYQVFGTGRRTADLANEDGLARETLGIADKVAPVPHALAPWLLEKARTKRFFFCC*WGVEGNEKEDRNRWHRAKMLWTEEQDMMLIMAVKRYEPEPTYANSKPKPNGPGR--CRNEYKIALRPVAESVGKSADAAWRRYSNVAEVYNKHAPPGQELPLPVLHKKKRTLQEPYDAKTIA-----------------NKKKGRRTGMLKAAGQTGFGTSFGHLQFQTSDLNESRMKAREEAAIAKAAGFEWANEEGSWDEDGRGGGYLPRHFSRWGWTMEELAAFTAVRQLLLVPEERFDPKQALERMQAFRAPTLQKAYRSLLAMEQIDISKSAWAANDHSVHDSLDHEVYKMIGRHGTNLMSRGVTAAGSMSALGLA 2628 L DVNWSDDD LDAMVDDIGREVD + + A AKS++K+ R+KFEM+P +PPE C A R AW+QMTPKDRRK+FVL+E+ C+S+P+ K++QLIKLLEGPGP +Q+ATLDTVV ELVQEGRI+ AP PK RGR +K FG+G+M L DAKTDP+S+A YAENF A+E A +R G YSW+ SPERFL++KRKM RTMILHRELLRCL + PG RVGSRA+DLDRVILD LSTF+TMFG PP+ LH++EMY VLKKAE +KATIRQAP AIWE+MRTVPWYKEAL S+L+ILH+MR+LT D P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ DPFAY H TA ++ P+ST G GSAAIDKFHK + AA AR+ AL QY + ++ RG+ RDK+A RSAAAEALLRE SP E +MGLGWAVLHVD+V+YTED + P+RV H++WSNFW+TYQV P+L WGV+ +E E +DM LI+AVK Y P+PTY N+KP +GPGR + + A++PVA+ VGKSA+A WRRY N+A K+A G+ LPLP + + R + P+D + NK+KGRRTG+L G KAREEAA+AKAAGFEW NEE SW+EDG GG LPR F +W WT EEL A AVRQLLLV RF+PK AYRSL+A QIDI+++AWAAND+SV DS+DHEVYKM+GRHG ++SRG+ AAG + ALG+A Sbjct: 477 LGDVNWSDDDELDAMVDDIGREVD-EAAAAAAAKSLDKIVVDRLKFEMNPMYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTAIAPQPKRWAWRGR--MKTFGHGEMILLPDAKTDPESLAEYAENFYAVEAAGERY----------GAQYSWDGVKSPERFLIHKRKMQRTMILHRELLRCLTRLPGQRVGSRALDLDRVILDMQLSTFITMFGCPPNYLHSKEMYKVLKKAEAKKATIRQAPRAIWEIMRTVPWYKEALMSTLQILHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPSSLPGE-DPFAYRHATA-QVVPISTDETTGKAVAVSGGGDGSAAIDKFHKAVEAARVARQDAL----------QYSRTPGARDTTRGISRDKKA-----RSAAAEALLRENSPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQV-----------------------------------PYLTNPKE---------WGVDDDEPEXXX------------EDMALILAVKNYLPKPTYPNTKP--SGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPA-NMRTRNKKRPHDNEDDGXXXXXXXXXKSGSGKKENKRKGRRTGLLAIQGPL-----------------MMAKKAREEAALAKAAGFEWVNEENSWEEDGCAGGVLPRPFDKWAWTTEELEALVAVRQLLLVSAARFNPK----------------AYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGKGMVSRGIVAAGRLHALGIA 1250 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2018.6068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2018.6068.1 >prot_L-elsbetiae_contig2018.6068.1 ID=prot_L-elsbetiae_contig2018.6068.1|Name=mRNA_L-elsbetiae_contig2018.6068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=546bp MVDDIGREVDGKRVSKAQAKSIEKMTEARVKFEMHPAFPPEDCPAAVRSAback to top mRNA from alignment at L-elsbetiae_contig2018:629..19602- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2018.6068.1 ID=mRNA_L-elsbetiae_contig2018.6068.1|Name=mRNA_L-elsbetiae_contig2018.6068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=18974bp|location=Sequence derived from alignment at L-elsbetiae_contig2018:629..19602- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2018:629..19602- >mRNA_L-elsbetiae_contig2018.6068.1 ID=mRNA_L-elsbetiae_contig2018.6068.1|Name=mRNA_L-elsbetiae_contig2018.6068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3276bp|location=Sequence derived from alignment at L-elsbetiae_contig2018:629..19602- (Laminarionema elsbetiae ELsaHSoW15)back to top |