mRNA_L-elsbetiae_contig2011.6048.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2011.6048.1
Unique NamemRNA_L-elsbetiae_contig2011.6048.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2011.6048.1 vs. uniprot
Match: A0A6H5KEN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 TPLHEAASRGHVEIVRALLAAGARRNPRASMVKCLFLSSLHQPHVFPHEARGVTPLHLAAQQGQAAVIRILVEAGANVNIL 243
            TPLHEA++RG VE+ +ALL AGAR++  AS               F  +   +T L LA + G   V+R LVEAGA+VN++
Sbjct:   94 TPLHEASARGGVEVTKALLQAGARKDIFAS---------------FGRDGPFLTALDLAVENGHLEVVRTLVEAGADVNLI 159
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BLAST of mRNA_L-elsbetiae_contig2011.6048.1 vs. uniprot
Match: A0A6H5KST3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.830e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 TPLHEAASRGHVEIVRALLAAGARRNPRASMVKCLFLSSLHQPHVFPHEARGVTPLHLAAQQGQAAVIRILVEAGANVNIL 243
            TPLHEA++RG VE+ +ALL AGAR++  AS               F  +   +T L LA + G   V+R LVEAGA+VN++
Sbjct:   94 TPLHEASARGGVEVTKALLQAGARKDIFAS---------------FGRDGPFLTALDLAVENGHLEVVRTLVEAGADVNLI 159
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BLAST of mRNA_L-elsbetiae_contig2011.6048.1 vs. uniprot
Match: A0A150FZ61_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FZ61_GONPE)

HSP 1 Score: 55.8 bits (133), Expect = 3.420e-6
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    1 TPLHEAASRGHVEIVRALLAAGARRNPRASMVKCLFLSSLHQPHVFPHEARGVTPLHLAAQQGQAAVIRILVEAGANV 234
            TPLH A  +GH E+V+ LLAAGA  +  A ++  L      QPH       G T LHLAA++G   V+  L+ AGA++
Sbjct:   69 TPLHAACWKGHTEVVKVLLAAGASPDAEAVLLPELAPPVRGQPHWL--RTGGFTLLHLAAKEGHVGVVEALIRAGASL 144
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BLAST of mRNA_L-elsbetiae_contig2011.6048.1 vs. uniprot
Match: A0A3M2TGT1_9EURO (Ankyrin repeat-containing protein n=1 Tax=Aspergillus sp. HF37 TaxID=1960876 RepID=A0A3M2TGT1_9EURO)

HSP 1 Score: 52.8 bits (125), Expect = 7.370e-5
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:    4 PLHEAASRGHVEIVRALLAAGARRNPRASMVKCLFLSSLHQPHVFPHEARGVTPLHLAAQQGQAAVIRILVEAGANVNILGGI 252
            PLHEAA +G+VEIV+ L+  GA  N +++                     G+T L  AA+ G+ AV+  L++AGAN NI GGI
Sbjct:  351 PLHEAAGKGYVEIVKLLIEHGADLNSKSN---------------------GLTALMAAAENGRGAVVEELLQAGANPNIRGGI 412
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2011.6048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KEN5_9PHAE2.580e-643.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KST3_9PHAE2.830e-643.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A150FZ61_GONPE3.420e-642.31Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A3M2TGT1_9EURO7.370e-539.76Ankyrin repeat-containing protein n=1 Tax=Aspergil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2011contigL-elsbetiae_contig2011:4412..5596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue9.6e-07
Seed eggNOG ortholog946362.XP_004988501.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.8202689-CDS-L-elsbetiae_contig2011:4411..45891622815832.8202689-CDS-L-elsbetiae_contig2011:4411..4589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2011 4412..4589 -
1691683132.9965105-CDS-L-elsbetiae_contig2011:4411..45891691683132.9965105-CDS-L-elsbetiae_contig2011:4411..4589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2011 4412..4589 -
1622815832.8318622-CDS-L-elsbetiae_contig2011:5228..55961622815832.8318622-CDS-L-elsbetiae_contig2011:5228..5596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2011 5229..5596 -
1691683133.0106676-CDS-L-elsbetiae_contig2011:5228..55961691683133.0106676-CDS-L-elsbetiae_contig2011:5228..5596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2011 5229..5596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2011.6048.1prot_L-elsbetiae_contig2011.6048.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2011 4412..5596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2011.6048.1

>prot_L-elsbetiae_contig2011.6048.1 ID=prot_L-elsbetiae_contig2011.6048.1|Name=mRNA_L-elsbetiae_contig2011.6048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
TPLHEAASRGHVEIVRALLAAGARRNPRASMVKCLFLSSLHQPHVFPHEA
RGVTPLHLAAQQGQAAVIRILVEAGANVNILGGILAEAPLHVATRYGQPA
AMLALLHKGADINAGNRRNQTALKAPLHYAAEEGNPEVLRLLLLAGADVD
SATPKERRTPLHVACRRAQLDCVFELLRWGAN
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mRNA from alignment at L-elsbetiae_contig2011:4412..5596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2011.6048.1 ID=mRNA_L-elsbetiae_contig2011.6048.1|Name=mRNA_L-elsbetiae_contig2011.6048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1185bp|location=Sequence derived from alignment at L-elsbetiae_contig2011:4412..5596- (Laminarionema elsbetiae ELsaHSoW15)
ACCCCGCTGCATGAGGCCGCCAGCCGTGGCCACGTTGAGATCGTGAGAGC
CCTCTTGGCGGCAGGCGCAAGGAGAAACCCTCGAGCTTCCATGGTAAAGT
GTCTCTTTCTGTCATCCCTTCACCAGCCCCATGTTTTCCCGCACGAGGCT
AGGGGGGTAACACCGCTTCACTTGGCTGCACAACAGGGGCAGGCGGCGGT
GATACGTATTCTCGTCGAAGCAGGCGCAAACGTTAACATACTCGGCGGCA
TACTGGCCGAGGCACCTCTCCACGTCGCCACGAGATACGGCCAGCCGGCG
GCGATGCTAGCCCTTCTCCACAAGGGGGCAGACATAAATGCGGGGAATCG
CCGTAACCAGACGGCTTTGTACGAGGCGAAATCTGCGCCCACGCTGGATC
TTCTCCTGGCTGCTGGGGCAGACAAGAACGGCCAGCCGACAAACTGTGCA
ACACCGCTCTGTCTCTCCGATACCCCACTCGGCGTTTTGGTCGGCACGAC
GGACGTGCGGCTGACAAGCGAGAGCAAAGTGGAAGCGGTGAAGATACTGG
TAGAAGTTCTGCTGCACCACGGGGCGCATGCGAGTATCCCACTTGCACCT
TGTCAAAAAGGCCTGCTCGTCGACTCGCTACAGCAGTTTCGAGCAGCCGT
CACGCCGGAGAGTTCCCCCTGCCAGGGGATGTGTCCCGTCGTCTCGTCGA
CTGCTACTACTGCTGCTTCTACTACTGCTGGCAGCGACTGGTCGCCCAAA
ACCTCAGACGCCTCGGAGAGCTTTTCGGAGAAGAGTTTGTCAGAGACCGA
CATCGGTGAAAACCATCAGGACCGGGACAACAATTGCCCTCTCACCCCGG
AGCCGACCGAATGTTTCCGGTCGCCGAGGTCCACGTGGGTTGGGCCGCCG
AGCTCGCCAAGCAGTCTCTTGCCGCACGCTGCAAAAAACGGCGTTCCTGG
TATCGTGGCTGCTCTGTTGCGCACCGGCCTGGACCCGATAGAGCAAGATG
AACACAGAAAGGCTCCTCTGCACTACGCCGCCGAAGAAGGCAATCCGGAA
GTCCTACGCCTCCTGCTCCTAGCCGGGGCAGACGTAGACTCTGCCACTCC
CAAGGAGAGGAGGACGCCCCTTCATGTCGCCTGCCGCCGCGCGCAGCTCG
ACTGCGTGTTTGAACTGCTGCGGTGGGGGGCAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2011:4412..5596-

>mRNA_L-elsbetiae_contig2011.6048.1 ID=mRNA_L-elsbetiae_contig2011.6048.1|Name=mRNA_L-elsbetiae_contig2011.6048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig2011:4412..5596- (Laminarionema elsbetiae ELsaHSoW15)
ACCCCGCTGCATGAGGCCGCCAGCCGTGGCCACGTTGAGATCGTGAGAGC
CCTCTTGGCGGCAGGCGCAAGGAGAAACCCTCGAGCTTCCATGGTAAAGT
GTCTCTTTCTGTCATCCCTTCACCAGCCCCATGTTTTCCCGCACGAGGCT
AGGGGGGTAACACCGCTTCACTTGGCTGCACAACAGGGGCAGGCGGCGGT
GATACGTATTCTCGTCGAAGCAGGCGCAAACGTTAACATACTCGGCGGCA
TACTGGCCGAGGCACCTCTCCACGTCGCCACGAGATACGGCCAGCCGGCG
GCGATGCTAGCCCTTCTCCACAAGGGGGCAGACATAAATGCGGGGAATCG
CCGTAACCAGACGGCTTTACCCCGCTGCATGAGGCCGCCAGCCGTGGCCA
CGTTGAGATCGTGAGAGCCCTCTTGGCGGCAGGCGCAAGGAGAAACCCTC
GAGCTTCCATGGTAAAGTGTCTCTTTCTGTCATCCCTTCACCAGCCCCAT
GTTTTCCCGCACGAGGCTAGGGGGGTAACACCGCTTCACTTGGCTGCACA
ACAGGGGCAGGCGGCGGTGATACGTATTCTCGTCGAAGCAGGCGCAAACG
TTAACATACTCGGCGGCATACTGGCCGAGGCACCTCTCCACGTCGCCACG
AGATACGGCCAGCCGGCGGCGATGCTAGCCCTTCTCCACAAGGGGGCAGA
CATAAATGCGGGGAATCGCCGTAACCAGACGGCTTTAAAGGCTCCTCTGC
ACTACGCCGCCGAAGAAGGCAATCCGGAAGTCCTACGCCTCCTGCTCCTA
GCCGGGGCAGACGTAGACTCTGCCACTCCCAAGGAGAGGAGGACGCCCCT
TCATGTCGCCTGCCGCCGCGCGCAGCTCGACTGCGTGTTTGAACTGCTGC
GGTGGGGGGCAAACAAAGGCTCCTCTGCACTACGCCGCCGAAGAAGGCAA
TCCGGAAGTCCTACGCCTCCTGCTCCTAGCCGGGGCAGACGTAGACTCTG
CCACTCCCAAGGAGAGGAGGACGCCCCTTCATGTCGCCTGCCGCCGCGCG
CAGCTCGACTGCGTGTTTGAACTGCTGCGGTGGGGGGCAAAC
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