mRNA_L-elsbetiae_contig20103.6044.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20103.6044.1
Unique NamemRNA_L-elsbetiae_contig20103.6044.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20103.6044.1 vs. uniprot
Match: D7FH87_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH87_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.540e-58
Identity = 114/188 (60.64%), Postives = 134/188 (71.28%), Query Frame = 1 
Query:  106 SVCRDGFSALYNAVVESHPAVAADMLQALERRDEERGTVFPYSGESCVAKAFFGGDRRRMTLVQGAAYGLEAKSLSKLLSMGALDPFSMKGGDGRAAEYVDLVTPGDAGMPPKDPVLKAAMHRMIARRPAFTATSWLWPRVPGV-LGGGTVRAGAGAAAGGRPRPRVSVFRPGQGRSRNVRIWKALRR 666
            +VC  G S LYNAVVES+ ++A +ML+ LER+DEE GTV+P S  S V K  F  DRR MTLV GA YGLE KSLSKLLSMGALDPF+ +GGD RAA Y++LVTP DAG+PPKDPVLKA M RMIARR AFTATSWLWP V      GG  +A AG   G  P   V+  RP + R R + +++A RR
Sbjct:  258 TVCSKGASPLYNAVVESNSSIAVEMLKTLERKDEEEGTVYP-SRASRVGKGLFRSDRRFMTLVNGAVYGLEFKSLSKLLSMGALDPFADEGGDERAAAYIELVTPADAGLPPKDPVLKACMRRMIARRVAFTATSWLWPLVLSAGKSGGEGKANAGRRRGMAP-VGVARCRPERRRHRQLELFRAFRR 443
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20103.6044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH87_ECTSI1.540e-5860.64Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20103contigL-elsbetiae_contig20103:170..2082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue4.3e-49
Seed eggNOG ortholog2880.D7FH87
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-13_004460.1
Exons2
Model size669
Cds size669
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.6389954-CDS-L-elsbetiae_contig20103:169..5601622815832.6389954-CDS-L-elsbetiae_contig20103:169..560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20103 170..560 -
1691683132.8995438-CDS-L-elsbetiae_contig20103:169..5601691683132.8995438-CDS-L-elsbetiae_contig20103:169..560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20103 170..560 -
1622815832.6521924-CDS-L-elsbetiae_contig20103:1804..20821622815832.6521924-CDS-L-elsbetiae_contig20103:1804..2082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20103 1805..2082 -
1691683132.917961-CDS-L-elsbetiae_contig20103:1804..20821691683132.917961-CDS-L-elsbetiae_contig20103:1804..2082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20103 1805..2082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20103.6044.1prot_L-elsbetiae_contig20103.6044.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20103 170..2082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20103.6044.1

>prot_L-elsbetiae_contig20103.6044.1 ID=prot_L-elsbetiae_contig20103.6044.1|Name=mRNA_L-elsbetiae_contig20103.6044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
PSYTGPSDIAPLYLAAKEGHREAARELVRAGGDPLSVCRDGFSALYNAVV
ESHPAVAADMLQALERRDEERGTVFPYSGESCVAKAFFGGDRRRMTLVQG
AAYGLEAKSLSKLLSMGALDPFSMKGGDGRAAEYVDLVTPGDAGMPPKDP
VLKAAMHRMIARRPAFTATSWLWPRVPGVLGGGTVRAGAGAAAGGRPRPR
VSVFRPGQGRSRNVRIWKALRR*
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mRNA from alignment at L-elsbetiae_contig20103:170..2082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20103.6044.1 ID=mRNA_L-elsbetiae_contig20103.6044.1|Name=mRNA_L-elsbetiae_contig20103.6044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1913bp|location=Sequence derived from alignment at L-elsbetiae_contig20103:170..2082- (Laminarionema elsbetiae ELsaHSoW15)
CCTTCCTATACAGGGCCATCGGATATCGCTCCCCTCTACCTGGCCGCGAA
AGAGGGACACCGGGAGGCTGCTCGAGAGCTCGTGAGAGCGGGAGGTGACC
CCCTGAGCGTGTGCAGAGACGGTTTCTCGGCGCTGTACAACGCGGTCGTG
GAAAGCCACCCCGCGGTAGCCGCGGACATGCTCCAGGCGCTGGAGCGGAG
GGACGAAGAGAGGGGCACCGTGTTCCCTTATTCTGGGGAGTCCTGCGTGG
CCAAGGCTTTCTTCGGGGGGGACCGCAGGTGATGGTGCTACATACCTATG
AGTTTATCTTCCGAACGTGGTGGAAATGCCCCCCCTACCCCCATACCACC
TAATGCCCCCCCTACCCCCATACCACCTATGGTCGTCTAGGTAGTCGTAG
TGGAGGATGTTGCCAGTGGGGGTAGACGAGGAATAAGCCAATAATTGGAG
AAACAAAAAACAAGAACAAAAACAACCGCCCCTCTCCGCACGGATCGAGG
CGAACAGAAAGACTTGAAAGTTCTCTACCGCCTTGGTGTCGGTGTTTTCG
TTGGTGTGTTGCTGCTGCTGCTGGTGTTGCTGTTGCTGTTGCTGTTGCTG
TTGCTGCTACTGCTGCTGTTGTTGTTGCTGCTGCTGCTGCTGTTGTTGCT
GTTGCTGTTGCTGTTGCCGTTGCTGCTGTTGCTGTTGCTGTTGCTGTTGC
TGTTGCTGCTGCCGCTGCTACTGCTGTTGCTGTTGCTGTTGCTGTTGTTG
TTGCCGTTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGCTGCTCTTGTT
GCTGTTGTTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCCGTTGCTGC
TGCTGCTGCTGCTGCTCACACCCCCTAAACCGATTTTTAAAGCTCCAAAG
TACTCGACGGCGAGAAGAGTGTCAGCCCTGAGAAGAGCGGCGCTGAAAAT
ATCTCATCAAGAGCTGTCCGAAAACGGGACGTTTGGTAGTAGAACCACAG
CTCTTTGCGGAGCAACCGACTCTGATAATCGGTCCAGGGTGTGTGTTATG
TTATACGGTGGCCGAGTTTGGTCGAGGATGCTGCCCCTCGATCTCGACGT
TCGTCATCGTTGTTGTGTTCTTCACAATACCCGAACAAAGCTTTCTAGAT
ACATACAACATTTGTTTTCAAGCGCAAGTAAGTAGTCCCGGAACAGACCA
GCACAGAGAGCGGGTTATCGAAGATCTACTGACGGACGCGTCATACTTCG
AAGTAGATAGATACCATAGGTGGCACAAGATACCACAACCCCCCGGACCG
ACTTTTAGAGCTCCATTAATTACGCCGTACCGAAGACGGTGGTGCCGGCA
CCAGACGACACATTTTCGGACCGCGCTGGACTAGATATTTCCAACGCTAC
CCCTTTCGGCGCTGGCGCTCTTCTTGCTGGGGAGGAATCGAGCTTTTAAA
ATTCTGTCCAGGGGGGTGGTATCTTGTGTCACATACGGTATGCATTTAAT
GCTCACGCGCTCGTGCTCTCAGGCGCATGACCCTGGTGCAGGGCGCCGCC
TACGGCCTGGAGGCCAAGTCGCTGTCGAAGCTCCTCAGCATGGGCGCGCT
CGACCCCTTCTCGATGAAAGGCGGGGACGGGCGTGCCGCAGAGTACGTCG
ACCTCGTCACTCCCGGAGATGCCGGCATGCCCCCCAAGGACCCCGTGCTT
AAGGCGGCCATGCACCGGATGATCGCAAGACGCCCGGCGTTCACCGCCAC
CTCTTGGTTGTGGCCGAGGGTGCCGGGCGTGCTGGGGGGGGGTACCGTGC
GTGCTGGGGCCGGTGCTGCTGCTGGTGGGCGCCCGCGTCCGAGGGTTTCG
GTGTTCCGCCCCGGGCAGGGCAGGAGCAGGAACGTCCGGATCTGGAAGGC
GTTACGCAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20103:170..2082-

>mRNA_L-elsbetiae_contig20103.6044.1 ID=mRNA_L-elsbetiae_contig20103.6044.1|Name=mRNA_L-elsbetiae_contig20103.6044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig20103:170..2082- (Laminarionema elsbetiae ELsaHSoW15)
CCTTCCTATACAGGGCCATCGGATATCGCTCCCCTCTACCTGGCCGCGAA
AGAGGGACACCGGGAGGCTGCTCGAGAGCTCGTGAGAGCGGGAGGTGACC
CCCTGAGCGTGTGCAGAGACGGTTTCTCGGCGCTGTACAACGCGGTCGTG
GAAAGCCACCCCGCGGTAGCCGCGGACATGCTCCAGGCGCTGGAGCGGAG
GGACGAAGAGAGGGGCACCGTGTTCCCTTATTCTGGGGAGTCCTGCGTGG
CCAAGGCTTTCTTCGGGGGGGACCGCAGCCTTCCTATACAGGGCCATCGG
ATATCGCTCCCCTCTACCTGGCCGCGAAAGAGGGACACCGGGAGGCTGCT
CGAGAGCTCGTGAGAGCGGGAGGTGACCCCCTGAGCGTGTGCAGAGACGG
TTTCTCGGCGCTGTACAACGCGGTCGTGGAAAGCCACCCCGCGGTAGCCG
CGGACATGCTCCAGGCGCTGGAGCGGAGGGACGAAGAGAGGGGCACCGTG
TTCCCTTATTCTGGGGAGTCCTGCGTGGCCAAGGCTTTCTTCGGGGGGGA
CCGCAGGCGCATGACCCTGGTGCAGGGCGCCGCCTACGGCCTGGAGGCCA
AGTCGCTGTCGAAGCTCCTCAGCATGGGCGCGCTCGACCCCTTCTCGATG
AAAGGCGGGGACGGGCGTGCCGCAGAGTACGTCGACCTCGTCACTCCCGG
AGATGCCGGCATGCCCCCCAAGGACCCCGTGCTTAAGGCGGCCATGCACC
GGATGATCGCAAGACGCCCGGCGTTCACCGCCACCTCTTGGTTGTGGCCG
AGGGTGCCGGGCGTGCTGGGGGGGGGTACCGTGCGTGCTGGGGCCGGTGC
TGCTGCTGGTGGGCGCCCGCGTCCGAGGGTTTCGGTGTTCCGCCCCGGGC
AGGGCAGGAGCAGGAACGTCCGGATCTGGAAGGCGTTACGCAGGTGAGCG
CATGACCCTGGTGCAGGGCGCCGCCTACGGCCTGGAGGCCAAGTCGCTGT
CGAAGCTCCTCAGCATGGGCGCGCTCGACCCCTTCTCGATGAAAGGCGGG
GACGGGCGTGCCGCAGAGTACGTCGACCTCGTCACTCCCGGAGATGCCGG
CATGCCCCCCAAGGACCCCGTGCTTAAGGCGGCCATGCACCGGATGATCG
CAAGACGCCCGGCGTTCACCGCCACCTCTTGGTTGTGGCCGAGGGTGCCG
GGCGTGCTGGGGGGGGGTACCGTGCGTGCTGGGGCCGGTGCTGCTGCTGG
TGGGCGCCCGCGTCCGAGGGTTTCGGTGTTCCGCCCCGGGCAGGGCAGGA
GCAGGAACGTCCGGATCTGGAAGGCGTTACGCAGGTGA
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