mRNA_L-elsbetiae_contig19820.5928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19820.5928.1
Unique NamemRNA_L-elsbetiae_contig19820.5928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19820.5928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19820contigL-elsbetiae_contig19820:754..1273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19820.5928.1prot_L-elsbetiae_contig19820.5928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19820 781..1143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.9876885-UTR-L-elsbetiae_contig19820:753..7801622815820.9876885-UTR-L-elsbetiae_contig19820:753..780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19820 754..780 +
1691683124.6170623-UTR-L-elsbetiae_contig19820:753..7801691683124.6170623-UTR-L-elsbetiae_contig19820:753..780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19820 754..780 +
1622815821.0083396-UTR-L-elsbetiae_contig19820:1143..12731622815821.0083396-UTR-L-elsbetiae_contig19820:1143..1273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19820 1144..1273 +
1691683124.63543-UTR-L-elsbetiae_contig19820:1143..12731691683124.63543-UTR-L-elsbetiae_contig19820:1143..1273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19820 1144..1273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.998411-CDS-L-elsbetiae_contig19820:780..11431622815820.998411-CDS-L-elsbetiae_contig19820:780..1143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19820 781..1143 +
1691683124.6267006-CDS-L-elsbetiae_contig19820:780..11431691683124.6267006-CDS-L-elsbetiae_contig19820:780..1143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19820 781..1143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19820.5928.1

>prot_L-elsbetiae_contig19820.5928.1 ID=prot_L-elsbetiae_contig19820.5928.1|Name=mRNA_L-elsbetiae_contig19820.5928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MGHSRDQSTGESVLPAIGEMITPTIGCKHRHFSALCEFLWNMCSWEHMHD
ACTTIFFIIEIKGFGFWKACEKRPSIFGIPGERKAAWNVNNHCCGGNHLL
NKARTLESSLQHAPRVVFDR*
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mRNA from alignment at L-elsbetiae_contig19820:754..1273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19820.5928.1 ID=mRNA_L-elsbetiae_contig19820.5928.1|Name=mRNA_L-elsbetiae_contig19820.5928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=520bp|location=Sequence derived from alignment at L-elsbetiae_contig19820:754..1273+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGAAAGCAAGACAAAAAACACTGATGGGACACTCCAGAGACCAATC
GACCGGTGAAAGTGTGCTACCGGCTATCGGTGAAATGATTACCCCCACAA
TTGGTTGTAAGCACAGGCACTTCTCGGCCCTATGTGAGTTTTTGTGGAAC
ATGTGTTCATGGGAACACATGCATGATGCATGTACAACGATTTTTTTCAT
TATCGAAATCAAGGGTTTTGGATTTTGGAAGGCTTGCGAAAAAAGGCCAT
CTATATTCGGGATTCCAGGCGAGCGGAAAGCAGCTTGGAATGTCAATAAT
CACTGTTGTGGGGGTAATCATTTGTTGAATAAGGCAAGAACATTAGAGAG
CTCGTTGCAACATGCGCCACGAGTCGTCTTCGATAGGTAGAAACCTACAT
CTAAATCGTGCGTGCTCTGGCCAAGGATAGGGACTTGCTGGAACGCTGCA
ACCTCGCGCCGTTTGCATGGGCGCTGCTAACACACTGCTGTACCATGCAC
CACACAGTGAGCGCCATACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19820:754..1273+

>mRNA_L-elsbetiae_contig19820.5928.1 ID=mRNA_L-elsbetiae_contig19820.5928.1|Name=mRNA_L-elsbetiae_contig19820.5928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig19820:754..1273+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACACTCCAGAGACCAATCGACCGGTGAAAGTGTGCTACCGGCTAT
CGGTGAAATGATTACCCCCACAATTGGTTGTAAGCACAGGCACTTCTCGG
CCCTATGTGAGTTTTTGTGGAACATGTGTTCATGGGAACACATGCATGAT
GCATGTACAACGATTTTTTTCATTATCGAAATCAAGGGTTTTGGATTTTG
GAAGGCTTGCGAAAAAAGGCCATCTATATTCGGGATTCCAGGCGAGCGGA
AAGCAGCTTGGAATGTCAATAATCACTGTTGTGGGGGTAATCATTTGTTG
AATAAGGCAAGAACATTAGAGAGCTCGTTGCAACATGCGCCACGAGTCGT
CTTCGATAGGTAGATGGGACACTCCAGAGACCAATCGACCGGTGAAAGTG
TGCTACCGGCTATCGGTGAAATGATTACCCCCACAATTGGTTGTAAGCAC
AGGCACTTCTCGGCCCTATGTGAGTTTTTGTGGAACATGTGTTCATGGGA
ACACATGCATGATGCATGTACAACGATTTTTTTCATTATCGAAATCAAGG
GTTTTGGATTTTGGAAGGCTTGCGAAAAAAGGCCATCTATATTCGGGATT
CCAGGCGAGCGGAAAGCAGCTTGGAATGTCAATAATCACTGTTGTGGGGG
TAATCATTTGTTGAATAAGGCAAGAACATTAGAGAGCTCGTTGCAACATG
CGCCACGAGTCGTCTTCGATAGGTAG
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