mRNA_L-elsbetiae_contig1982.5927.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1982.5927.1
Unique NamemRNA_L-elsbetiae_contig1982.5927.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: D8LT01_ECTSI (DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT01_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 8.870e-90
Identity = 172/226 (76.11%), Postives = 186/226 (82.30%), Query Frame = 1 
Query:    1 MAADAS-SSGSTQVQYLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPA-DFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEAADIPVPKAPPPPEHVREESPFGGARXXXXXXXXXXXXXXXXXXXXXXXKPKGKAIAPEDFFAAA 672
            MAADA+ +SG TQVQYL+ELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKV+ATYLV+GR G       A+EVKLVSAEGL+STR+ LETVT VHVYSVQ APCSQPA D STQLWA D EH+KEMV ++T+AGANLRTHRLSGVRCPE  D+PVPKAPP               XXXXXXXXXXXXXXXXXX     KPKGKAIAP+DFFAAA
Sbjct:    1 MAADAADASGGTQVQYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGRSG--IGGFGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQPAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCPEGVDVPVPKAPP--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNASSKPKGKAIAPKDFFAAA 222
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI0001CB96C3 (DNA polymerase delta subunit 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB96C3)

HSP 1 Score: 85.9 bits (211), Expect = 6.440e-16
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 1 
Query:   43 YLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGA 435
            YLE L+ +V+DE K+VT++WL+  LSV  N AK+MLY + Q+Q ++ +  TYLV G +          ++ LV    LE+T+  L+ VTSVH+YS+           S  L+  D + +KE + Q+   GA
Sbjct:    7 YLENLQEYVVDENKIVTYKWLSKTLSVHVNQAKQMLYMYVQKQKKKDLCVTYLVGGEQKDGDGLVMK-KLSLVRGNQLEATKCSLDKVTSVHIYSIHKCLLKD----SNALYTVDYDITKEHLHQSNKFGA 132
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI001C717AB1 (DNA polymerase delta subunit 3-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C717AB1)

HSP 1 Score: 85.1 bits (209), Expect = 1.810e-15
Identity = 55/155 (35.48%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:   28 STQVQYLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFC--QRQGER--KVTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEA 480
            S    YL+ LE +V+DE K++T++WL+L L V++N AK+MLY F   QR  ++   +  TY V G   G        +V LV  E L S +  L+ V S+HVYSVQ    ++  D S  L+ A+ +  KE +         L  ++ SG+ C  A
Sbjct:    6 SMDSMYLDNLEEFVVDEGKIITYKWLSLTLGVSSNVAKQMLYHFVTNQRNSDKGDNLNVTYFVSGLEAGEDGLPDMHKVMLVREENLASAKSKLKDVKSIHVYSVQK---TKLPDMSV-LYTANYDKVKENI---------LTINKYSGIECSAA 147
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI0014257AE6 (DNA polymerase delta subunit 3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257AE6)

HSP 1 Score: 85.1 bits (209), Expect = 1.820e-15
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 1 
Query:   43 YLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERK---VTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEA 480
            YLE LE +V DE ++VT++WL+  L V  N AK+MLY F  +Q +++   V  TYLV G +          +V +V+A+ LE  +  L+ V+ VH+YS+Q A        S  L+ AD + + E + Q   +       R S + C EA
Sbjct:    6 YLENLEEFVFDENRIVTYKWLSQTLQVHVNLAKQMLYTFFNQQKDKEADSVNVTYLVSGVQS-IDNGEKVRKVSIVNAQNLEKHKASLQCVSGVHIYSIQKAQLKD----SNSLYTADYDLTLEQIKQAACS-------RFSAIECAEA 142
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI000F67B6F5 (DNA polymerase delta subunit 3-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI000F67B6F5)

HSP 1 Score: 84.7 bits (208), Expect = 2.480e-15
Identity = 57/155 (36.77%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:   28 STQVQYLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFC--QRQGER--KVTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEA 480
            S    YL+ LE +V DE K+VT++WL+L L V +N AK+MLY F   QR  ++   +  TY V G   G        ++ LV  E L S +  L+ V SVHVYSVQ    ++  D S  L+ A+ +  KE V         L  ++ SG+ C  A
Sbjct:    6 SMDSMYLDNLEEFVFDEGKIVTYKWLSLTLGVQSNVAKQMLYHFVTNQRNSDKGDNLNVTYFVSGLEAGKDGLPDMHKIMLVREENLASAKSKLKDVMSVHVYSVQK---TKLPDMSV-LYTANYDKVKENV---------LSINKYSGIECTAA 147
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI00148A5E77 (DNA polymerase delta subunit 3 isoform X1 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5E77)

HSP 1 Score: 82.0 bits (201), Expect = 3.330e-15
Identity = 58/164 (35.37%), Postives = 80/164 (48.78%), Query Frame = 1 
Query:   28 STQVQYLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERK--VTATYLVMGR-RGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEAADIPVPKAPP 510
            +T   YLE LE +V DE K+VT++WL+L L V  N AK+MLY F + Q +RK  V ATY V G  +             ++  E LE+ +  L TV S+HVYSVQ A        S  L+ AD +  KE +            H+   ++  +A      K PP
Sbjct:    2 ATDSMYLENLEEYVNDEGKIVTYKWLSLNLHVHVNEAKQMLYTFVEEQKKRKIHVAATYFVSGMCKSVDGCQVQTYTCTVIPEEELETFKNSLTTVHSIHVYSVQKAGLKD----SNSLYLADYDCVKENL---------FEIHKYRSIKYGKAQPSSEAKRPP 152
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI001B88DBF9 (DNA polymerase delta subunit 3-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DBF9)

HSP 1 Score: 82.0 bits (201), Expect = 1.920e-14
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 1 
Query:   43 YLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERK---VTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEA 480
            YL+ L+ +V DE +VVT++WL+ VL+V  N AK+ML+ FC++Q  +    ++ TY V G            +  +VS E LES +  L  V  VH+YS+  +        S  L+ AD +  KE   Q+T         + S +RCP A
Sbjct:    7 YLDNLDEFVNDENRVVTYKWLSRVLTVHVNEAKRMLFAFCEQQRNKDHDDISVTYFVAGSTAAGMHSPQEYKCAVVSEEQLESYKASLAVVNCVHIYSIHKSKLKD----SNALYIADCDGFKEHALQST---------QHSAIRCPWA 142
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: A0A2P6N713_9EUKA (DNA polymerase delta subunit 3 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N713_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 1.960e-14
Identity = 46/142 (32.39%), Postives = 79/142 (55.63%), Query Frame = 1 
Query:   43 YLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVR 468
            Y++ LE WV +++K++T++WL+  L+V  N AKKMLY F ++ G +K+   Y + G++ G        E  LV  + LE  R+  + ++ VH+YSVQ    S+  + + QLW AD    +  + +    GA    +R S ++
Sbjct:    7 YIDNLENWVCEDRKIITYKWLSHELNVANNIAKKMLYAFAEKMG-KKIKVIYFIGGKKDGTY------EFMLVRDQLLEECRKQFDEISGVHIYSVQ----SELPNDAIQLWNADAVQYQNALQK--GEGAQYLDNRYSSIQ 135
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: UPI0014553F90 (DNA polymerase delta subunit 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014553F90)

HSP 1 Score: 80.9 bits (198), Expect = 5.070e-14
Identity = 56/149 (37.58%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:   43 YLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVTATYLVMG---RRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEA 480
            YLE LE +V DE KVVT+RWL+  LSV  N AK+ML  F ++   + V  TYL+ G   +  G         V LVS + L+ +   L  V S HVYSVQ A        +  L+  D E  KE + Q          +R S ++C EA
Sbjct:    6 YLENLEEFVFDEDKVVTYRWLSQTLSVHVNRAKQMLATFVEQTKPKAVNVTYLLSGIEEKENGVKVNI----VTLVSDDNLKKSEASLSKVLSKHVYSVQQAKLKD----TNSLYMTDYEIIKENITQP---------NRYSAIKCTEA 137
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BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Match: A7SVP8_NEMVE (DNA polymerase delta subunit 3 n=7 Tax=Nematostella vectensis TaxID=45351 RepID=A7SVP8_NEMVE)

HSP 1 Score: 80.5 bits (197), Expect = 6.960e-14
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 1 
Query:   43 YLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERK----VTATYLVMGRRGGAXXXXXAMEVKLVSAEGLESTREGLETVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTHRLSGVRCPEAADI 489
            +++ LE +V DE ++VT++WL+  L+VTAN AK+MLY F   Q E+K    ++ TYLV GR           +  L + + LE T+   + VTSVH+YS+Q     Q    S  L+  D + S+E   +          +R S + C EAA +
Sbjct:    8 FMDNLEEFVYDEDRIVTYKWLSRTLTVTANQAKQMLYAFLTAQQEKKNKPQLSVTYLVGGRI--LQHGEMCSQYVLTTDDRLEETKSQFDPVTSVHIYSIQ----KQTLKDSNSLYMVDYDISREHKHED---------NRWSHIYCKEAARL 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1982.5927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT01_ECTSI8.870e-9076.11DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus ... [more]
UPI0001CB96C36.440e-1637.40DNA polymerase delta subunit 3-like n=1 Tax=Saccog... [more]
UPI001C717AB11.810e-1535.48DNA polymerase delta subunit 3-like n=1 Tax=Penaeu... [more]
UPI0014257AE61.820e-1534.90DNA polymerase delta subunit 3-like n=1 Tax=Anneis... [more]
UPI000F67B6F52.480e-1536.77DNA polymerase delta subunit 3-like n=3 Tax=Penaeu... [more]
UPI00148A5E773.330e-1535.37DNA polymerase delta subunit 3 isoform X1 n=3 Tax=... [more]
UPI001B88DBF91.920e-1434.23DNA polymerase delta subunit 3-like isoform X1 n=2... [more]
A0A2P6N713_9EUKA1.960e-1432.39DNA polymerase delta subunit 3 n=1 Tax=Planoprotos... [more]
UPI0014553F905.070e-1437.58DNA polymerase delta subunit 3-like n=1 Tax=Asteri... [more]
A7SVP8_NEMVE6.960e-1434.64DNA polymerase delta subunit 3 n=7 Tax=Nematostell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1982contigL-elsbetiae_contig1982:16934..21296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.8
Seed ortholog evalue5.7e-73
Seed eggNOG ortholog2880.D8LT01
Preferred namePOLD3
KEGG rclassRC02795
KEGG koko:K03504
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042575,GO:0042592,GO:0042769,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234
EggNOG free text desc.nucleotide-excision repair, DNA gap filling
EggNOG OGs28HEU@1,2QPSW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03032,ko03400
Ec32 ortholog descriptionDNA polymerase subunit Cdc27
Ec32 orthologEc-08_004310.1
Exons6
Model size692
Cds size690
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1982.5927.1prot_L-elsbetiae_contig1982.5927.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1982 16934..21296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.891723-CDS-L-elsbetiae_contig1982:16933..169931622815820.891723-CDS-L-elsbetiae_contig1982:16933..16993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 16934..16993 +
1691683124.5502446-CDS-L-elsbetiae_contig1982:16933..169931691683124.5502446-CDS-L-elsbetiae_contig1982:16933..16993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 16934..16993 +
1622815820.905701-CDS-L-elsbetiae_contig1982:17603..176861622815820.905701-CDS-L-elsbetiae_contig1982:17603..17686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 17604..17686 +
1691683124.5627613-CDS-L-elsbetiae_contig1982:17603..176861691683124.5627613-CDS-L-elsbetiae_contig1982:17603..17686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 17604..17686 +
1622815820.9159749-CDS-L-elsbetiae_contig1982:18510..186161622815820.9159749-CDS-L-elsbetiae_contig1982:18510..18616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 18511..18616 +
1691683124.5726948-CDS-L-elsbetiae_contig1982:18510..186161691683124.5726948-CDS-L-elsbetiae_contig1982:18510..18616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 18511..18616 +
1622815820.9299202-CDS-L-elsbetiae_contig1982:18901..190241622815820.9299202-CDS-L-elsbetiae_contig1982:18901..19024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 18902..19024 +
1691683124.583487-CDS-L-elsbetiae_contig1982:18901..190241691683124.583487-CDS-L-elsbetiae_contig1982:18901..19024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 18902..19024 +
1622815820.9417481-CDS-L-elsbetiae_contig1982:19580..196601622815820.9417481-CDS-L-elsbetiae_contig1982:19580..19660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 19581..19660 +
1691683124.5966487-CDS-L-elsbetiae_contig1982:19580..196601691683124.5966487-CDS-L-elsbetiae_contig1982:19580..19660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 19581..19660 +
1622815820.9530456-CDS-L-elsbetiae_contig1982:21058..212961622815820.9530456-CDS-L-elsbetiae_contig1982:21058..21296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 21059..21296 +
1691683124.6076033-CDS-L-elsbetiae_contig1982:21058..212961691683124.6076033-CDS-L-elsbetiae_contig1982:21058..21296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1982 21059..21296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1982.5927.1

>prot_L-elsbetiae_contig1982.5927.1 ID=prot_L-elsbetiae_contig1982.5927.1|Name=mRNA_L-elsbetiae_contig1982.5927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MAADASSSGSTQVQYLEELEGWVLDEQKVVTFRWLALVLSVTANAAKKML
YDFCQRQGERKVTATYLVMGRRGGAGGAGGAMEVKLVSAEGLESTREGLE
TVTSVHVYSVQAAPCSQPADFSTQLWAADQEHSKEMVGQTTDAGANLRTH
RLSGVRCPEAADIPVPKAPPPPEHVREESPFGGARGGAASGGAGGGRGKS
AAGAAASSKPKGKAIAPEDFFAAAAGSGKG
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mRNA from alignment at L-elsbetiae_contig1982:16934..21296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1982.5927.1 ID=mRNA_L-elsbetiae_contig1982.5927.1|Name=mRNA_L-elsbetiae_contig1982.5927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4363bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:16934..21296+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGACGCGAGTTCGAGCGGGTCGACGCAAGTCCAGTACCTCGA
GGAGCTTGAGGTGAGGGAAAGCGGCCTGTACAAGGCGAGGGGCACAGCAG
TGAGAGAGAGGGATCTTGCTACATACCTGCGCGCTGGGCTGACGGTACCG
CCTCTGAAAAAAAGAGACGGGGGCACAGCAGTAGTGAGTGGTCTTGCTGC
CTGTTGCCTGCGCGCTGACCTGACCACGGCGGTGCCGCTATTGTACATAG
CCGTAGATTGCGTGCGAAATGTATGTGGCACCTTTAACATCCCGTGAACC
AGTCGTCAATACCGATGCCTGATGCTGCTTGCTGGTTGCTTGCTTGCTTG
CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTG
CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTG
CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTGTCTGTCGGCCTCGCCTCGGCTTTTGATTGGTCACGCC
TCGGCTTTTGATTGGTCAAGGGATGGGTCCTCGACGAGCAGAAGGTGGTG
ACCTTCCGGTGGCTGGCGCTGGTGCTCTCCGTCACTGCGAACGCGGCGAA
GAAGTGAGCCGTCGGAGGGGAAGGGAGGGAAGGAGGGTCAGGGTTTTTTG
CTCATGCGTGAATGAAGTTTTAAAGGTTGGCGGTGTGTCTCATGCCTTTT
TTCGCTTGAAAATATGTGATGTGCTCCAGCACCGCAGGAGGGGGGTGTGG
GGGCCTCGGGGAGGGGAACCCCTCTATGTGCGACCACTGGGTCAGTACTC
TGGCAAAATGTCCTTCGTGGAAAAGGGGCCTCTGCAGCAGTATTTAGTGC
CGGCAATTGATGTGACGATAAAGAGAAAACAAAACAAAAAAATCTCTTAG
AGGTGTGCAGACCAAGGATAGCTGGCACCACTTTGGGGAACAATGCCTGA
GGGAGAATGAATGAATACTTCGCGGACGGCATACATGTTTTGGAGGGAAT
CCTATCCTCCAACAGGGTATGCTTCAACAGTAGAACATAGATACCGTTTT
TTTTTGTCTCCACACTTCCCTTCCACCCCTTGCAAAAGGCTATACGTACT
GATAATGTACTGCTGCAGTACCTACCGTAGGTGACACAAGATACCACACC
CCCTGGACAGATTTTCAAAGCTCGGTTCCTCCCCAACAGGAAGAGTGTCG
TGCCGAAAGAGAGTGGCGTTGGAAAGATCTGATCGAAGGCTGTCCGAAAA
CGTGTCGTTTGGTGCTGGCACCTTTTCCATTATGGAGTAATGGAGCTCTA
AATTTATGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGCATGAACCA
CTTTTGTCTCTTTATTTTTACTCTACTCTACTCTACTCTCCACCCACCCC
TTTGGCATTGATTGGGTGCGCGCGCAGGATGCTGTACGACTTCTGCCAGC
GGCAAGGCGAGCGGAAGGTTACGGCCACGTACCTCGTCATGGGCCGGAGA
GGCGGCGCCGGGGGCGCCGGGGGAGCAATGGAGGTGCATTCTTGTTCTGT
AGCCCCCCCCCTCCCTCCCCCCCCCGTGCTCGAGAGACGTGTCTTCCACC
GGCGTTCTTGCGGTGGGCGGGCGGCGTGTGGCGGCTGTCCGTGGAGGGGT
AGAGACGGTAGCTGTGACAACGCGGGTTGTCGCGTATGATGATCTGGTGG
TCAGGTGGGCTTGAGACTGCTGCACAGACCGGTCTTTAACTTTTTTGCTT
CGTGGAAAGCAAGATAAGTTACTTTCCTCTCCTTCCGTTCTCCTGATTTT
TGTTTTTTTTGTTCAAAGGTAAAGCTAGTGTCGGCGGAGGGGCTGGAAAG
CACCCGCGAGGGGCTCGAAACCGTGACGTCGGTCCACGTCTACAGCGTGC
AGGCGGCGCCGTGCTCTCAGCCGGCCGACTTTTCCACCCAGGCAAGAAGG
AGGAGAAGGAGGAGAAGAGGACGACGAGTGTTGGCGCCTCTGCCGCGCAG
GGCGGCCGATCGTGTTTTGCGGTTGCCCTTTTATTATTTTTCTTCTTTTT
TTGGCCCTCTGGCATGGTTTGTGACAGATGTTGATATCTACATATTTTAT
ATACATAAATACACTTCTTTTTCTAGTCTTGGCCTGACAACGGTGTACTT
GTAGGGCGTTTCGTTTTGCAGGTATCATGTGTGGTGTGTTTGTACAAACG
TACTTTTTGACTGTTAACGCCGCAGCCCCCCCCCCCCCCCCCCCCGCGCG
CCTACTGTTGGCTCACTACACGCAGCCCCCGCCCCATGTCCGTTGTCTTC
CTTTAAAAAATGAACTCCGAGGTGTGTCTGTTCTCACACGGCCAAAAATC
GGATAAAAAAGATATAATACCCGGTAGAAGTATACAGCAAAACCCTGTGT
TCATTGGTTTTGATCCGGTGTCGCCCTGATGGCCCCTCTGTGGTAGTCGT
CGAATCAGTTGATAAAAAAACTCTTGAACGTGTGTTTCATTGCGCAGCTG
TGGGCCGCGGATCAGGAGCACAGCAAGGAGATGGTGGGGCAGACGACGGA
CGCGGGGGCCAATCTTAGGACGCACAGGTACAGCGACGGCAAGCAGTGTA
GCGTAGCGTGCTGCCGCGACCCCCCCCCGGTCCTCACCGCTCGGACGGAG
GGAGCCCCGTGTCTGCCTGTGCTTTCCCCGAGCGTTACTACTACGCATGC
CTGTTGTTTTTCGTGCTTGTTTGCGTGCGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGCTCTCGCCCTGAAGTTGGTGGTGGCCGAGTC
ATGCCGACGTTGTTGAGCTCTCTCTCTCTCCCCCCCTCTCTCTCTGTCCC
CCCCCCCCCTCCTCTCTCTCTCTGATACTAGCCTGCCTAGCTCACCAGCC
ATCGTGGATCTCCGTTCGTTTTGATGTGATATCTTCTGTGTGTTCCCTCG
CTTCAGTGCGGCTGCCTGGCCCGCCGCCTTGTGCACGTGTGCTTGTTGCG
TTTTGCGCCGTCCCCCCTGCTCACTCACACCCCCAAAGCGCAGTGACCCT
GGAACCATGAAGAGTCAACGTTTAATGTACGCCAGACACAGGAAATCGTG
CCCCAGTATGTACAAGCGTCTAGTCACGTACGAGTATATGGGCGGAGGGA
GCATCACCTGAAAGCGCAGTGAACCCGAAAGCGTGCAAGAGTTACCATAT
ACCTTTTTTTATGTGCGCCAAAACACACAAGGCTTGAACCCCAACTTTGT
GCGCGTGTTGTCTTCACACTAAAAACCCTTCCGATCTCTCTCTATCCAGT
ACACCTCCATGAGTCCGTATACTAATCCAACACTGACGCGGTCGATTCCC
GTGGTCACAGGATAACTTACCCTAAAACATTGCACAAGCGTAAAATCACG
CACGAGTATTTTGAGACGAAGGCTCGCCGGAAGAGCTCGATGACCCCCCA
TAGAAGACAGAAGACCACCGACAGCAGTAGTACCGGGGGCACGGGGATAC
ATCACATCACGCCCGTGTACCCTTGAGCCCAACTACATGCGTACTGCTGA
GCGGACAAGTGCCGTCACCGCCCCGAAATCAGACTCGCTGCACCGCCGTT
CCCCAACGATGAACACCCCTGGTAATTTACAGCATGCCCGCAAGTACGAC
AAATCACACACATACAAAAAAAACATACATGCATACATACATACGAAGTA
CATACATACATACGTACGTACGTTCGTACGTATGTACGTACTCGAAGTAT
ACATACATAGCACTGCTGTATATCTATATCAATATGCATGATACAAAATG
ATGCTCGGTACAGGTGTATCTGATGTGTTTCCCCGACAAGAACACGAAGA
AATACACGTATTTTAGCACTATTATCTACTTTATGTACAATAGAAGTATG
TATATGAACGTGCACGATGCACGAAATGATTTATTGTATGTATGTGATGT
TGTTTCTACGATAATACGTGACCAGGCTTAGCGGGGTACGCTGCCCCGAG
GCAGCGGACATCCCCGTACCCAAAGCCCCGCCGCCGCCGGAGCACGTCCG
CGAAGAGTCCCCCTTCGGGGGGGCCCGTGGGGGCGCGGCTAGCGGCGGCG
CGGGCGGAGGACGCGGCAAGAGCGCCGCCGGCGCCGCCGCCTCCTCGAAG
CCGAAGGGGAAGGCGATAGCTCCTGAAGATTTCTTCGCCGCGGCAGCGGG
ATCGGGGAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1982:16934..21296+

>mRNA_L-elsbetiae_contig1982.5927.1 ID=mRNA_L-elsbetiae_contig1982.5927.1|Name=mRNA_L-elsbetiae_contig1982.5927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig1982:16934..21296+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGACGCGAGTTCGAGCGGGTCGACGCAAGTCCAGTACCTCGA
GGAGCTTGAGATGGCGGCGGACGCGAGTTCGAGCGGGTCGACGCAAGTCC
AGTACCTCGAGGAGCTTGAGGGATGGGTCCTCGACGAGCAGAAGGTGGTG
ACCTTCCGGTGGCTGGCGCTGGTGCTCTCCGTCACTGCGAACGCGGCGAA
GAAGGATGGGTCCTCGACGAGCAGAAGGTGGTGACCTTCCGGTGGCTGGC
GCTGGTGCTCTCCGTCACTGCGAACGCGGCGAAGAAGATGCTGTACGACT
TCTGCCAGCGGCAAGGCGAGCGGAAGGTTACGGCCACGTACCTCGTCATG
GGCCGGAGAGGCGGCGCCGGGGGCGCCGGGGGAGCAATGGAGGATGCTGT
ACGACTTCTGCCAGCGGCAAGGCGAGCGGAAGGTTACGGCCACGTACCTC
GTCATGGGCCGGAGAGGCGGCGCCGGGGGCGCCGGGGGAGCAATGGAGGT
AAAGCTAGTGTCGGCGGAGGGGCTGGAAAGCACCCGCGAGGGGCTCGAAA
CCGTGACGTCGGTCCACGTCTACAGCGTGCAGGCGGCGCCGTGCTCTCAG
CCGGCCGACTTTTCCACCCAGGTAAAGCTAGTGTCGGCGGAGGGGCTGGA
AAGCACCCGCGAGGGGCTCGAAACCGTGACGTCGGTCCACGTCTACAGCG
TGCAGGCGGCGCCGTGCTCTCAGCCGGCCGACTTTTCCACCCAGCTGTGG
GCCGCGGATCAGGAGCACAGCAAGGAGATGGTGGGGCAGACGACGGACGC
GGGGGCCAATCTTAGGACGCACAGCTGTGGGCCGCGGATCAGGAGCACAG
CAAGGAGATGGTGGGGCAGACGACGGACGCGGGGGCCAATCTTAGGACGC
ACAGGCTTAGCGGGGTACGCTGCCCCGAGGCAGCGGACATCCCCGTACCC
AAAGCCCCGCCGCCGCCGGAGCACGTCCGCGAAGAGTCCCCCTTCGGGGG
GGCCCGTGGGGGCGCGGCTAGCGGCGGCGCGGGCGGAGGACGCGGCAAGA
GCGCCGCCGGCGCCGCCGCCTCCTCGAAGCCGAAGGGGAAGGCGATAGCT
CCTGAAGATTTCTTCGCCGCGGCAGCGGGATCGGGGAAGGGCGCTTAGCG
GGGTACGCTGCCCCGAGGCAGCGGACATCCCCGTACCCAAAGCCCCGCCG
CCGCCGGAGCACGTCCGCGAAGAGTCCCCCTTCGGGGGGGCCCGTGGGGG
CGCGGCTAGCGGCGGCGCGGGCGGAGGACGCGGCAAGAGCGCCGCCGGCG
CCGCCGCCTCCTCGAAGCCGAAGGGGAAGGCGATAGCTCCTGAAGATTTC
TTCGCCGCGGCAGCGGGATCGGGGAAGGGC
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