mRNA_L-elsbetiae_contig19817.5922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19817.5922.1
Unique NamemRNA_L-elsbetiae_contig19817.5922.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: D7FS55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS55_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 6.020e-77
Identity = 120/132 (90.91%), Postives = 126/132 (95.45%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            QSCWCLSFREWARD+GLLW PAALLGGTAACLGGAHHVVRGALAAGE+S LQY LVHLPVSLHFGWVSCATLVN N+YI+LL FSDK KLNFSLASIA+AVGLAVAVTG+TGDPVYAGVVAWALSAVASEKG
Sbjct:  142 QSCWCLSFREWARDSGLLWFPAALLGGTAACLGGAHHVVRGALAAGEMSNLQYGLVHLPVSLHFGWVSCATLVNFNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 273          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.650e-40
Identity = 76/133 (57.14%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLS-FSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            Q+ WC SFR WARD+GLLWLPA LLGGT   LGG H ++R A    +++ LQY  VH+P+SLH GW+SCATLVNLN Y A ++  S++ KL  +L S+ AAV L VA+T    DP+YA VVAWAL AV S  G
Sbjct:  399 QALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAVGSPAG 531          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A7S2UXB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXB1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.580e-30
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            QS WC +FR WA+ +G LWLPAALL  TA  LGGAH V+  AL + E+S L+Y +V++P++LHFGW++ A+LV+ N Y+A ++ S   K   S ASI A V  A  V  +  +P Y  VV+WAL+AVA +KG
Sbjct:  146 QSLWCSAFRPWAKKSGFLWLPAALLTLTAVALGGAHKVLFDALHSEEVSMLEYIIVNIPLTLHFGWITAASLVSWNGYLASVTASISIKSLASSASIVAGVIAAALVGWNRIEPFYPLVVSWALAAVADKKG 277          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A4S135_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S135_OSTLU)

HSP 1 Score: 112 bits (279), Expect = 7.940e-28
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            Q+ WC +FR WA+     W+ +ALL   A  LG AH  +R A +A   S   Y   H+P+S+HFGW+SCA LVNLNS++A     D +     L++  A  GL  AVT +TGDPVYA V+AWAL+AVAS+ G
Sbjct:   88 QALWCAAFRPWAKAPRHFWVSSALLVAEAVALGSAHRALRAAASAA--SKAWYWTTHVPLSMHFGWISCAALVNLNSHVAKTCAPDTQLATAFLSAFGAG-GLGAAVTLTTGDPVYALVIAWALTAVASDGG 216          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A4D9D883_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D883_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.730e-26
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALL-SFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASE 390
            QS WC++FR W     + ++P+ALL  TA  L   H V+R A+AAG +    Y +VHLP+SLHFGW++CATLVNLN + A+  +     KL  +LASI  AV L   VT ++GDPV A VVAWAL AVA +
Sbjct:  205 QSLWCVAFRPWVGR--MQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHD 333          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A7S1SIL2_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SIL2_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 1.960e-25
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   13 CLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            C +   WA+     WL  ALL   A  LGGAHHV+R A+ +G ++T  Y   H+P+SLHFGW++ A++V+LNS +A L+ S   +L  + AS+  +  +   VT  TGDP+YA  +AWALS VAS+ G
Sbjct:    1 CAASPPWAQPPRHFWLSPALLATEAVALGGAHHVLRAAVQSGAMTTATYFTAHVPLSLHFGWITAASVVSLNS-LAALTLSLPAQLATAFASVVGSAVVGTGVTVVTGDPLYALTLAWALSGVASDGG 127          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A7S3AHI9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AHI9_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 3.050e-24
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   10 WCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVR--GALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            WC +FR       LLWLP+ LL  T   LG AH  +R  G   AG L      LV  PV+LHFGW++ A LVNLN+Y+A    S + K   + AS  AA+G A+ V+  TGDP++AGV+AWAL+AVA++ G
Sbjct:    2 WCATFRPSVCGPALLWLPSLLLAATGLLLGMAHCAIRATGYGLAGNL------LVRWPVALHFGWITAAALVNLNNYLARQETSIRAKEVGAHASTLAALGTALYVSTCTGDPIFAGVIAWALAAVAADGG 126          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A7R9XV25_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XV25_MICPS)

HSP 1 Score: 104 bits (259), Expect = 3.220e-24
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            Q+ WC++FR WAR     W+  ALL   A  LG       GA  +  LST ++    LP+ LHFGW++ A +VNLNS +A+   +   +L+ + AS+  A  L VAV   TGD V+A  +AWAL+AVAS+ G
Sbjct:  167 QALWCVAFRPWARRPRHFWISGALLATEAVALGRVARCFVGASPSRSLSTTEFLAARLPLGLHFGWITAAAVVNLNSLVAVAGAAPHAQLSIAFASVWGAAALGVAVALGTGDAVFAATLAWALAAVASDGG 298          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A7S3UZ57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ57_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.380e-23
Identity = 63/125 (50.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   52 LWLPAALLGGTAACLGGAH-----HVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKR-----KLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVASEKG 396
            LW PAALL  TAA L GAH     H ++GA A G  S   YCL +LP+SLHFGW++ ATLVN N  +A    +D R     K   + AS+A AV    AV     DPVY+ VVAWAL+AVA E+G
Sbjct:    3 LWAPAALLAATAAALAGAHGAVRAHFLQGAAAPGGSSWTDYCLCNLPLSLHFGWITAATLVNANGAVA----NDTRRTVVTKSLVARASVAVAVAAGAAVAWLRRDPVYSLVVAWALAAVADEQG 123          
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Match: A0A7S0Q3J2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3J2_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 2.860e-23
Identity = 60/128 (46.88%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELSTLQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAAVGLAVAVTGSTGDPVYAGVVAWALSAVA 384
            QSCWC +FR       LLW+PA LL  T A LG AH  +R A     +  L  CLV +PV+LHFGW++ A LVN N+Y+A    S + K   + AS  AAV     V+ +T D V+AGV+AWAL  VA
Sbjct:  208 QSCWCAAFRPSVCGPRLLWVPALLLASTGAALGVAHRAIRTA----NVGALANCLVRVPVTLHFGWITAAALVNANNYLARTVASVRAKEAAAHASSLAAVAAVAYVSHTTADHVFAGVIAWALGWVA 331          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19817.5922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS55_ECTSI6.020e-7790.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LCC2_ECTSI3.650e-4057.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UXB1_9STRA8.580e-3050.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A4S135_OSTLU7.940e-2847.73Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A4D9D883_9STRA2.730e-2650.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1SIL2_9CHLO1.960e-2544.53Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3AHI9_9EUKA3.050e-2447.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7R9XV25_MICPS3.220e-2442.42Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S3UZ57_HETAK2.380e-2350.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0Q3J2_9EUKA2.860e-2346.88Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19817contigL-elsbetiae_contig19817:745..1769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.2
Seed ortholog evalue1.1e-60
Seed eggNOG ortholog2880.D7FS55
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CRKW@1,2S47J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_000620.1
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.5137339-CDS-L-elsbetiae_contig19817:744..9581622815820.5137339-CDS-L-elsbetiae_contig19817:744..958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19817 745..958 -
1691683124.3126223-CDS-L-elsbetiae_contig19817:744..9581691683124.3126223-CDS-L-elsbetiae_contig19817:744..958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19817 745..958 -
1622815820.5255804-CDS-L-elsbetiae_contig19817:1587..17691622815820.5255804-CDS-L-elsbetiae_contig19817:1587..1769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19817 1588..1769 -
1691683124.325083-CDS-L-elsbetiae_contig19817:1587..17691691683124.325083-CDS-L-elsbetiae_contig19817:1587..1769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19817 1588..1769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19817.5922.1prot_L-elsbetiae_contig19817.5922.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19817 745..1769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19817.5922.1

>prot_L-elsbetiae_contig19817.5922.1 ID=prot_L-elsbetiae_contig19817.5922.1|Name=mRNA_L-elsbetiae_contig19817.5922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
QSCWCLSFREWARDAGLLWLPAALLGGTAACLGGAHHVVRGALAAGELST
LQYCLVHLPVSLHFGWVSCATLVNLNSYIALLSFSDKRKLNFSLASIAAA
VGLAVAVTGSTGDPVYAGVVAWALSAVASEKG
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mRNA from alignment at L-elsbetiae_contig19817:745..1769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19817.5922.1 ID=mRNA_L-elsbetiae_contig19817.5922.1|Name=mRNA_L-elsbetiae_contig19817.5922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1025bp|location=Sequence derived from alignment at L-elsbetiae_contig19817:745..1769- (Laminarionema elsbetiae ELsaHSoW15)
CAGTCGTGCTGGTGCCTCTCCTTCCGCGAGTGGGCGAGAGACGCGGGTCT CCTCTGGCTCCCAGCTGCCCTGTTAGGGGGCACCGCGGCTTGCCTCGGGG GGGCGCACCACGTTGTGCGGGGCGCCCTGGCGGCTGGCGAGCTGAGCACT CTCCAGTACTGCTTGGTGCACCTGCCTGTCAGGTACCGTTTCCAGCGTTC GGTTTGATTTTCTAGTCTCAATGGTGTACCTTGAAGTTTAGGTACCGTTT CCAGCGTTCGGTTTTATTTTCTAGTCTCAATGGTGTACCTTGGAGTTTAG GTTCGGAGTGGAATCCGGGGGCAAGAATGCGCGTGCTTACCGTTTCGGGT GTGTTGTATATATATGTTTTCTTTTTTCACATGTATTTCCAATGCTCAAT GGGCTCCTCGCCACGAGAGCATCTCGCCAGAGTACTGAACCGTGGTCACA TAGATGTGTATTATATTGCGAAGAGAAGGTTGGAAGATGGGTGGGGTACG AAGACTTCTACGAAGCTACGAAGAATTTGGGGCGGGGAAAAAAAGTTGTC GTTCATTCACTGTCGGTTTTTCGAGATTTAAACCAAAAAGCAACTGAACT AATCACACGCATGTTCGACACCTGGGCATCATATTGTATTGCAGCAGGTT TTGCATGCAGCCCCCCCCCCCCCCACCCTGCCGCATGTCGGCACCCTCGA TCTGCGACGCCCTCACCTCAGCCACGTGGTGCCCACCCTGATCCCCCCTC GACTAACCTATGGGACCCCCCCCACACACACACATACACACACCCTCGTG CCTCCGCTCAGCCTTCACTTCGGGTGGGTGTCGTGCGCGACGCTGGTGAA CCTCAACAGCTACATCGCCCTGCTCTCTTTCTCCGACAAGCGCAAGCTCA ACTTTTCGCTGGCGTCCATCGCGGCCGCGGTTGGTCTGGCTGTTGCCGTG ACCGGGAGCACGGGGGACCCGGTCTACGCCGGCGTCGTCGCGTGGGCCCT CTCGGCGGTGGCAAGCGAGAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19817:745..1769-

>mRNA_L-elsbetiae_contig19817.5922.1 ID=mRNA_L-elsbetiae_contig19817.5922.1|Name=mRNA_L-elsbetiae_contig19817.5922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig19817:745..1769- (Laminarionema elsbetiae ELsaHSoW15)
CAGTCGTGCTGGTGCCTCTCCTTCCGCGAGTGGGCGAGAGACGCGGGTCT
CCTCTGGCTCCCAGCTGCCCTGTTAGGGGGCACCGCGGCTTGCCTCGGGG
GGGCGCACCACGTTGTGCGGGGCGCCCTGGCGGCTGGCGAGCTGAGCACT
CTCCAGTACTGCTTGGTGCACCTGCCTGTCAGCAGTCGTGCTGGTGCCTC
TCCTTCCGCGAGTGGGCGAGAGACGCGGGTCTCCTCTGGCTCCCAGCTGC
CCTGTTAGGGGGCACCGCGGCTTGCCTCGGGGGGGCGCACCACGTTGTGC
GGGGCGCCCTGGCGGCTGGCGAGCTGAGCACTCTCCAGTACTGCTTGGTG
CACCTGCCTGTCAGCCTTCACTTCGGGTGGGTGTCGTGCGCGACGCTGGT
GAACCTCAACAGCTACATCGCCCTGCTCTCTTTCTCCGACAAGCGCAAGC
TCAACTTTTCGCTGGCGTCCATCGCGGCCGCGGTTGGTCTGGCTGTTGCC
GTGACCGGGAGCACGGGGGACCCGGTCTACGCCGGCGTCGTCGCGTGGGC
CCTCTCGGCGGTGGCAAGCGAGAAGGGCCCTTCACTTCGGGTGGGTGTCG
TGCGCGACGCTGGTGAACCTCAACAGCTACATCGCCCTGCTCTCTTTCTC
CGACAAGCGCAAGCTCAACTTTTCGCTGGCGTCCATCGCGGCCGCGGTTG
GTCTGGCTGTTGCCGTGACCGGGAGCACGGGGGACCCGGTCTACGCCGGC
GTCGTCGCGTGGGCCCTCTCGGCGGTGGCAAGCGAGAAGGGC
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