mRNA_L-elsbetiae_contig1981.5920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1981.5920.1
Unique NamemRNA_L-elsbetiae_contig1981.5920.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1981.5920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1981contigL-elsbetiae_contig1981:11376..11943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size568
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1981.5920.1prot_L-elsbetiae_contig1981.5920.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1981 11483..11887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.3756196-UTR-L-elsbetiae_contig1981:11375..114821622815820.3756196-UTR-L-elsbetiae_contig1981:11375..11482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1981 11376..11482 +
1691683124.2380707-UTR-L-elsbetiae_contig1981:11375..114821691683124.2380707-UTR-L-elsbetiae_contig1981:11375..11482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1981 11376..11482 +
1622815820.3970625-UTR-L-elsbetiae_contig1981:11887..119431622815820.3970625-UTR-L-elsbetiae_contig1981:11887..11943Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1981 11888..11943 +
1691683124.2625718-UTR-L-elsbetiae_contig1981:11887..119431691683124.2625718-UTR-L-elsbetiae_contig1981:11887..11943Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1981 11888..11943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.3864462-CDS-L-elsbetiae_contig1981:11482..118871622815820.3864462-CDS-L-elsbetiae_contig1981:11482..11887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1981 11483..11887 +
1691683124.248036-CDS-L-elsbetiae_contig1981:11482..118871691683124.248036-CDS-L-elsbetiae_contig1981:11482..11887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1981 11483..11887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1981.5920.1

>prot_L-elsbetiae_contig1981.5920.1 ID=prot_L-elsbetiae_contig1981.5920.1|Name=mRNA_L-elsbetiae_contig1981.5920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MCRLVLAPSSLRSNGALKFGPGGVVSCVTYGTGRSPKARLLFDGIDSSEA
LRTVWHWVRRRSKRTTRRETQAIRAGPSKFPRRFFSAHQASTHAYQVFIY
HLLVFNSTQCTQLTRRVETTHAQTGDEFPRHLRR*
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mRNA from alignment at L-elsbetiae_contig1981:11376..11943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1981.5920.1 ID=mRNA_L-elsbetiae_contig1981.5920.1|Name=mRNA_L-elsbetiae_contig1981.5920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=568bp|location=Sequence derived from alignment at L-elsbetiae_contig1981:11376..11943+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCAGCAAGAG
GAGCGCCACTGCCGAAAGGGGTAGCGTTGGAAAGATCTAGTCGAGGGCTG
TCCGAAAATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATG
GAGCTCTAAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGT
ACGGGACGAAGCCCCAAAGCGCGCCTTCTGTTTGATGGAATTGACAGCTC
CGAGGCCTTGCGGACCGTCTGGCACTGGGTTCGTCGTCGAAGCAAACGCA
CAACTCGTCGCGAAACGCAGGCAATCCGGGCAGGCCCGAGCAAATTCCCA
CGACGATTTTTCAGCGCTCACCAAGCGAGCACTCATGCATACCAGGTATT
TATTTACCACTTGTTGGTTTTCAACTCAACACAATGCACACAGCTTACGC
GAAGAGTCGAGACAACCCACGCACAGACAGGGGACGAATTCCCTCGACAT
TTGCGAAGATAAAAACACCTTGCGGCCACATGCATATGCGACGCTTGAGA
AACGCAAGCTTACAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1981:11376..11943+

>mRNA_L-elsbetiae_contig1981.5920.1 ID=mRNA_L-elsbetiae_contig1981.5920.1|Name=mRNA_L-elsbetiae_contig1981.5920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1981:11376..11943+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGGAGCTCT
AAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTACGGGAC
GAAGCCCCAAAGCGCGCCTTCTGTTTGATGGAATTGACAGCTCCGAGGCC
TTGCGGACCGTCTGGCACTGGGTTCGTCGTCGAAGCAAACGCACAACTCG
TCGCGAAACGCAGGCAATCCGGGCAGGCCCGAGCAAATTCCCACGACGAT
TTTTCAGCGCTCACCAAGCGAGCACTCATGCATACCAGGTATTTATTTAC
CACTTGTTGGTTTTCAACTCAACACAATGCACACAGCTTACGCGAAGAGT
CGAGACAACCCACGCACAGACAGGGGACGAATTCCCTCGACATTTGCGAA
GATAAATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGGA
GCTCTAAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAC
GGGACGAAGCCCCAAAGCGCGCCTTCTGTTTGATGGAATTGACAGCTCCG
AGGCCTTGCGGACCGTCTGGCACTGGGTTCGTCGTCGAAGCAAACGCACA
ACTCGTCGCGAAACGCAGGCAATCCGGGCAGGCCCGAGCAAATTCCCACG
ACGATTTTTCAGCGCTCACCAAGCGAGCACTCATGCATACCAGGTATTTA
TTTACCACTTGTTGGTTTTCAACTCAACACAATGCACACAGCTTACGCGA
AGAGTCGAGACAACCCACGCACAGACAGGGGACGAATTCCCTCGACATTT
GCGAAGATAA
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