mRNA_L-elsbetiae_contig19683.5874.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19683.5874.1
Unique NamemRNA_L-elsbetiae_contig19683.5874.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19683.5874.1 vs. uniprot
Match: D8LGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.580e-30
Identity = 74/96 (77.08%), Postives = 79/96 (82.29%), Query Frame = -1 
Query:  193 DLLSDAQVQIAAACLPPAAINVAAYRLCMRSFPL-----GGGGGGVMYAARDVALAAGGAGAGAGRFDESAIIPFRFSATRVTGVPGELAPPRSAS 465
            DLLS A+VQ AAA LPPAAINVAAYRLCMRSFP      G G  GV+YAARDVA AAGGAG+GAGRFDE AI+P+RFS  RVTGVP ELAPPRSAS
Sbjct: 2053 DLLSPAEVQAAAARLPPAAINVAAYRLCMRSFPPPDNGDGDGDRGVIYAARDVATAAGGAGSGAGRFDEGAIMPYRFSDARVTGVPDELAPPRSAS 2148
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BLAST of mRNA_L-elsbetiae_contig19683.5874.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.600e-29
Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = -1 
Query:  193 QQHIPRDCGDLLSDAQVQIAAACLPPAAINVAAYRLCMRSFPL-----GGGGGGVMYAARDVALAAGGAGAGAGRFDESAIIPFRFSATRVTGVPGELAPPRSAS 492
            Q+ +  +  DLLS A+VQ AAA LPP AINVAAYRLCMRSFP      G G GG++YAA DVA AAGGAG+GAGRF+E AI+P+RFS  RVTGVP ELAPPRSAS
Sbjct: 2260 QESLATEGLDLLSPAEVQAAAARLPPPAINVAAYRLCMRSFPPPGDCDGDGDGGIIYAALDVAAAAGGAGSGAGRFNEGAIMPYRFSDARVTGVPDELAPPRSAS 2364
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19683.5874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGU8_ECTSI1.580e-3077.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1H2_9PHAE2.600e-2968.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19683contigL-elsbetiae_contig19683:1536..2079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.6910791-CDS-L-elsbetiae_contig19683:1535..20781622815815.6910791-CDS-L-elsbetiae_contig19683:1535..2078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19683 1536..2078 +
1691683120.9724119-CDS-L-elsbetiae_contig19683:1535..20781691683120.9724119-CDS-L-elsbetiae_contig19683:1535..2078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19683 1536..2078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19683.5874.1prot_L-elsbetiae_contig19683.5874.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19683 1536..2078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19683.5874.1

>prot_L-elsbetiae_contig19683.5874.1 ID=prot_L-elsbetiae_contig19683.5874.1|Name=mRNA_L-elsbetiae_contig19683.5874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
APPRSARSGVVGSVHTTTPAAAKVVPVASVVRRLTHSPGGNVGAVDATVP
DGGRRRRRGRRSRSRSRTRGRQLPRDAGDPRGREPERDDRALVEPSRSGP
RPSGRQGDVAGGVHDAAAAAAERERPHAQAVRGHVDRRRGEAGGRDLDLR
VAEQVAAVPRDVLLVVLVPAPGVAATATAIA
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mRNA from alignment at L-elsbetiae_contig19683:1536..2079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19683.5874.1 ID=mRNA_L-elsbetiae_contig19683.5874.1|Name=mRNA_L-elsbetiae_contig19683.5874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=544bp|location=Sequence derived from alignment at L-elsbetiae_contig19683:1536..2079+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCTCCCCGCTCTGCCCGCAGCGGTGTCGTGGGGAGCGTGCACACCAC
CACCCCCGCCGCCGCCAAGGTGGTGCCCGTCGCGAGCGTCGTACGACGGC
TCACCCACTCCCCCGGCGGAAACGTGGGAGCCGTTGACGCCACTGTTCCT
GATGGCGGCCGCCGCCGCCGCCGCGGCCGCCGAAGCCGAAGCCGAAGCCG
AACGCGGGGGCGCCAGCTCCCCCGGGACGCCGGTGACCCTCGTGGCCGAG
AACCGGAACGGGATGATCGCGCTCTCGTCGAACCGTCCCGCTCCGGCCCC
CGCCCCTCCGGCCGCCAGGGCGACGTCGCGGGCGGCGTACATGACGCCGC
CGCCGCCGCCGCCGAGCGGGAACGACCGCATGCACAGGCGGTACGCGGCC
ACGTTGATCGCCGCCGGGGGGAGGCAGGCGGCCGCGATCTGGACCTGCGC
GTCGCTGAGCAGGTCGCCGCAGTCCCTCGGGATGTGCTGCTGGTGGTGCT
GGTACCTGCCCCCGGAGTTGCCGCCACCGCCACCGCCATCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19683:1536..2079+

>mRNA_L-elsbetiae_contig19683.5874.1 ID=mRNA_L-elsbetiae_contig19683.5874.1|Name=mRNA_L-elsbetiae_contig19683.5874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig19683:1536..2079+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCTCCCCGCTCTGCCCGCAGCGGTGTCGTGGGGAGCGTGCACACCAC
CACCCCCGCCGCCGCCAAGGTGGTGCCCGTCGCGAGCGTCGTACGACGGC
TCACCCACTCCCCCGGCGGAAACGTGGGAGCCGTTGACGCCACTGTTCCT
GATGGCGGCCGCCGCCGCCGCCGCGGCCGCCGAAGCCGAAGCCGAAGCCG
AACGCGGGGGCGCCAGCTCCCCCGGGACGCCGGTGACCCTCGTGGCCGAG
AACCGGAACGGGATGATCGCGCTCTCGTCGAACCGTCCCGCTCCGGCCCC
CGCCCCTCCGGCCGCCAGGGCGACGTCGCGGGCGGCGTACATGACGCCGC
CGCCGCCGCCGCCGAGCGGGAACGACCGCATGCACAGGCGGTACGCGGCC
ACGTTGATCGCCGCCGGGGGGAGGCAGGCGGCCGCGATCTGGACCTGCGC
GTCGCTGAGCAGGTCGCCGCAGTCCCTCGGGATGTGCTGCTGGTGGTGCT
GGTACCTGCCCCCGGAGTTGCCGCCACCGCCACCGCCATCGCCGCCCCTC
CCCGCTCTGCCCGCAGCGGTGTCGTGGGGAGCGTGCACACCACCACCCCC
GCCGCCGCCAAGGTGGTGCCCGTCGCGAGCGTCGTACGACGGCTCACCCA
CTCCCCCGGCGGAAACGTGGGAGCCGTTGACGCCACTGTTCCTGATGGCG
GCCGCCGCCGCCGCCGCGGCCGCCGAAGCCGAAGCCGAAGCCGAACGCGG
GGGCGCCAGCTCCCCCGGGACGCCGGTGACCCTCGTGGCCGAGAACCGGA
ACGGGATGATCGCGCTCTCGTCGAACCGTCCCGCTCCGGCCCCCGCCCCT
CCGGCCGCCAGGGCGACGTCGCGGGCGGCGTACATGACGCCGCCGCCGCC
GCCGCCGAGCGGGAACGACCGCATGCACAGGCGGTACGCGGCCACGTTGA
TCGCCGCCGGGGGGAGGCAGGCGGCCGCGATCTGGACCTGCGCGTCGCTG
AGCAGGTCGCCGCAGTCCCTCGGGATGTGCTGCTGGTGGTGCTGGTACCT
GCCCCCGGAGTTGCCGCCACCGCCACCGCCATCGCC
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