mRNA_L-elsbetiae_contig19683.5873.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19683.5873.1
Unique NamemRNA_L-elsbetiae_contig19683.5873.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19683.5873.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.690e-9
Identity = 39/63 (61.90%), Postives = 43/63 (68.25%), Query Frame = 2 
Query:    2 AREADALFQ-MHMARQHQQHQQQ---EAHGPDMRRMSPEALHRMAYGHLGMVHMPGAPQYGNA 178
            AR ADA FQ MHMA            + HGPDMRRMSPEALHRM YGH+ MVH+PGA Q G+A
Sbjct: 2622 ARGADAFFQQMHMAXXXXXXXXXXXXDVHGPDMRRMSPEALHRMPYGHMSMVHIPGASQCGSA 2684
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19683.5873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1H2_9PHAE4.690e-961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19683contigL-elsbetiae_contig19683:338..903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size527
Cds size498
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19683.5873.1prot_L-elsbetiae_contig19683.5873.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19683 338..875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.626855-CDS-L-elsbetiae_contig19683:337..5451622815815.626855-CDS-L-elsbetiae_contig19683:337..545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19683 338..545 -
1691683120.9416318-CDS-L-elsbetiae_contig19683:337..5451691683120.9416318-CDS-L-elsbetiae_contig19683:337..545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19683 338..545 -
1622815815.6381276-CDS-L-elsbetiae_contig19683:585..8751622815815.6381276-CDS-L-elsbetiae_contig19683:585..875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19683 586..875 -
1691683120.9530191-CDS-L-elsbetiae_contig19683:585..8751691683120.9530191-CDS-L-elsbetiae_contig19683:585..875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19683 586..875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.6519337-UTR-L-elsbetiae_contig19683:875..9031622815815.6519337-UTR-L-elsbetiae_contig19683:875..903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19683 876..903 -
1691683120.9625974-UTR-L-elsbetiae_contig19683:875..9031691683120.9625974-UTR-L-elsbetiae_contig19683:875..903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19683 876..903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19683.5873.1

>prot_L-elsbetiae_contig19683.5873.1 ID=prot_L-elsbetiae_contig19683.5873.1|Name=mRNA_L-elsbetiae_contig19683.5873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MHMARQHQQHQQQEAHGPDMRRMSPEALHRMAYGHLGMVHMPGAPQYGNA
SPGGGASGGAAAAAAAAAAAAAAVHGGAWPGFIPPPQPQQQQQQQQHTLP
ISDHSTPSSTSSEGVMTRAAARRWSACTTAISLSSGSSSSSSTREAGLRP
EPGATRRAAAGNTERR
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mRNA from alignment at L-elsbetiae_contig19683:338..903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19683.5873.1 ID=mRNA_L-elsbetiae_contig19683.5873.1|Name=mRNA_L-elsbetiae_contig19683.5873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=566bp|location=Sequence derived from alignment at L-elsbetiae_contig19683:338..903- (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGGGAGGCGGATGCCCTATTCCAGATGCACATGGCTAGGCAGCACC
AGCAGCACCAGCAGCAGGAAGCGCATGGACCGGACATGCGGCGGATGTCC
CCCGAAGCTCTGCACAGGATGGCGTATGGTCACCTGGGCATGGTGCACAT
GCCGGGGGCGCCGCAGTACGGTAACGCCAGCCCCGGCGGTGGAGCCAGTG
GCGGAGCCGCGGCAGCGGCGGCAGCCGCTGCCGCGGCTGCCGCCGCTGTC
CATGGAGGGGCGTGGCCGGGCTTCATACCTCCACCTCAGCCACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCACTCTTCCCATCTCCGACCACAGCACACCCAGCAGCACCAG
TTCGGAGGGGGTCATGACGCGAGCGGCGGCGCGGCGGTGGTCGGCATGCA
CCACGGCCATATCTCTCAGCAGCGGCAGCAGCAGCAGCAGCAGCACCAGA
GAGGCGGGGCTTCGCCCGGAACCGGGGGCTACAAGGAGGGCCGCGGCGGG
CAATACGGAGAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19683:338..903-

>mRNA_L-elsbetiae_contig19683.5873.1 ID=mRNA_L-elsbetiae_contig19683.5873.1|Name=mRNA_L-elsbetiae_contig19683.5873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig19683:338..903- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACATGGCTAGGCAGCACCAGCAGCACCAGCAGCAGGAAGCGCATGG
ACCGGACATGCGGCGGATGTCCCCCGAAGCTCTGCACAGGATGGCGTATG
GTCACCTGGGCATGGTGCACATGCCGGGGGCGCCGCAGTACGGTAACGCC
AGCCCCGGCGGTGGAGCCAGTGGCGGAGCCGCGGCAGCGGCGGCAGCCGC
TGCCGCGGCTGCCGCCGCTGTCCATGGAGGGGCGTGGCCGGGCTTCATAC
CTCCACCTCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAATGCACATGG
CTAGGCAGCACCAGCAGCACCAGCAGCAGGAAGCGCATGGACCGGACATG
CGGCGGATGTCCCCCGAAGCTCTGCACAGGATGGCGTATGGTCACCTGGG
CATGGTGCACATGCCGGGGGCGCCGCAGTACGGTAACGCCAGCCCCGGCG
GTGGAGCCAGTGGCGGAGCCGCGGCAGCGGCGGCAGCCGCTGCCGCGGCT
GCCGCCGCTGTCCATGGAGGGGCGTGGCCGGGCTTCATACCTCCACCTCA
GCCACAGCAGCAGCAGCAGCAGCAGCAGCACACTCTTCCCATCTCCGACC
ACAGCACACCCAGCAGCACCAGTTCGGAGGGGGTCATGACGCGAGCGGCG
GCGCGGCGGTGGTCGGCATGCACCACGGCCATATCTCTCAGCAGCGGCAG
CAGCAGCAGCAGCAGCACCAGAGAGGCGGGGCTTCGCCCGGAACCGGGGG
CTACAAGGAGGGCCGCGGCGGGCAATACGGAGAGGCGGCACTCTTCCCAT
CTCCGACCACAGCACACCCAGCAGCACCAGTTCGGAGGGGGTCATGACGC
GAGCGGCGGCGCGGCGGTGGTCGGCATGCACCACGGCCATATCTCTCAGC
AGCGGCAGCAGCAGCAGCAGCAGCACCAGAGAGGCGGGGCTTCGCCCGGA
ACCGGGGGCTACAAGGAGGGCCGCGGCGGGCAATACGGAGAGGCGG
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