mRNA_L-elsbetiae_contig19675.5869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19675.5869.1
Unique NamemRNA_L-elsbetiae_contig19675.5869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19675.5869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19675contigL-elsbetiae_contig19675:111..1346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size395
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19675.5869.1prot_L-elsbetiae_contig19675.5869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19675 203..1253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.389253-UTR-L-elsbetiae_contig19675:110..2021622815815.389253-UTR-L-elsbetiae_contig19675:110..202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19675 111..202 -
1691683120.8093374-UTR-L-elsbetiae_contig19675:110..2021691683120.8093374-UTR-L-elsbetiae_contig19675:110..202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19675 111..202 -
1622815815.436903-UTR-L-elsbetiae_contig19675:1253..13461622815815.436903-UTR-L-elsbetiae_contig19675:1253..1346Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19675 1254..1346 -
1691683120.8449306-UTR-L-elsbetiae_contig19675:1253..13461691683120.8449306-UTR-L-elsbetiae_contig19675:1253..1346Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19675 1254..1346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.4005938-CDS-L-elsbetiae_contig19675:202..2091622815815.4005938-CDS-L-elsbetiae_contig19675:202..209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19675 203..209 -
1691683120.8183258-CDS-L-elsbetiae_contig19675:202..2091691683120.8183258-CDS-L-elsbetiae_contig19675:202..209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19675 203..209 -
1622815815.4166932-CDS-L-elsbetiae_contig19675:643..7241622815815.4166932-CDS-L-elsbetiae_contig19675:643..724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19675 644..724 -
1691683120.826702-CDS-L-elsbetiae_contig19675:643..7241691683120.826702-CDS-L-elsbetiae_contig19675:643..724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19675 644..724 -
1622815815.4269083-CDS-L-elsbetiae_contig19675:1131..12531622815815.4269083-CDS-L-elsbetiae_contig19675:1131..1253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19675 1132..1253 -
1691683120.835916-CDS-L-elsbetiae_contig19675:1131..12531691683120.835916-CDS-L-elsbetiae_contig19675:1131..1253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19675 1132..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19675.5869.1

>prot_L-elsbetiae_contig19675.5869.1 ID=prot_L-elsbetiae_contig19675.5869.1|Name=mRNA_L-elsbetiae_contig19675.5869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MYFQRDGKGFCHGKKSLAWPLQWAAVPRNGEIIEGDLRRERCSGSPKRPR
SSTGWRRLLRATSTPDSWR*
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mRNA from alignment at L-elsbetiae_contig19675:111..1346-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19675.5869.1 ID=mRNA_L-elsbetiae_contig19675.5869.1|Name=mRNA_L-elsbetiae_contig19675.5869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig19675:111..1346- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGTATATCAACACCCTTACACCCTCCTCCAGTGTGTCTTCTAGCGAA
AGCACGTCCAAGGTACAGGGCAAGTGGCGACTCACCACTGGGCATGTACT
TCCAGCGTGATGGAAAAGGCTTTTGTCATGGAAAAAAAAGTTTAGCGTGG
CCCCTGCAGTGGGCGGCTGTCCCAAGAAACGGCGAAATTATCGAGGGCGA
CCTCAGGAGGGAAAGGTACAGTCAAACAGTATCAACGTCGTGGTGTTGTG
CTGCGGCTGGTGACACGCAGTGGGAGCACCGCGTGTTAGTGGTGGTCACG
TGGTCACGTGAATTCCACCCAGGTGTCTATCTTTGTATTTAGAGTCTGGT
TTTGTCAACACCGCTACGTCCAGCCGCGCAGCCCGTGTTCTTTCCGACTT
ACATAGACGTATCGAGAACGGCGGCTGTGCTCCTCGGACCGGTCCTGCAG
GCATCACTTTCCCCTTACCTGGATCTAGGCCGAGAATCGTTTGCCAAGCC
AACGAGCCTCGCGGTTGTAACATGTCTAGTCTATGTACCTATTTGGTTGT
GGATCGCGCGTATGTATGTGTCTTTTCCTCGCCGACACGGACTTGTCGAC
TGGGATTGGAACCATGATGCAGGTGTTCCGGAAGCCCGAAGAGACCACGG
AGCTCTACCGGTTGGCGGCGGTTGTTGAGGGCAACGAGTACGCCCGACAG
TTGGTAGGTCAAGACGTTTGCACTCGACAGTCAACCGCCAGTTGAACAGA
GATAGCTATATTTACTTGAAAAATAAGTAGATGTCCAGTTTCTTACCTGC
ACGGCCATTGTTGGTGTTGCCGCTGTTGGTTGAAGTTGTCGATCTCTGTG
TTTTCGACTTTCGCCACAAGAACACGCTTTCGGTGCTTTACGTCGTGACG
GGGTGCTGGATCCGGCTACAACTGTACGCAGTTGATGGAATGCAGCTGGT
GCTTCATCGGCGATGCTGAAATATCGATTAATCAGCTCACGCAGTGTTGT
GTCCATACACAAACCTGCTGTGCAGGTCCGCAGCTATGTATGTAAGCTGA
CAGCGCCTTGTTCTTTTTGGCCCGCAACCTCAAATGTCCCCGTTTGCGCT
GTGGCTTGTATTGGTACATGTCTGTCACTCACTGCAGGAGGTGATCACCA
ACCGCACTATGGCCAAGCCCGGCTCTTTCTTCGTCGAGAAGATCACACGC
CCGTGTCTTCTCAACAGGATGCCCGGTACCGCAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19675:111..1346-

>mRNA_L-elsbetiae_contig19675.5869.1 ID=mRNA_L-elsbetiae_contig19675.5869.1|Name=mRNA_L-elsbetiae_contig19675.5869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig19675:111..1346- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTTCCAGCGTGATGGAAAAGGCTTTTGTCATGGAAAAAAAAGTTT
AGCGTGGCCCCTGCAGTGGGCGGCTGTCCCAAGAAACGGCGAAATTATCG
AGGGCGACCTCAGGAGGGAAAGATGTACTTCCAGCGTGATGGAAAAGGCT
TTTGTCATGGAAAAAAAAGTTTAGCGTGGCCCCTGCAGTGGGCGGCTGTC
CCAAGAAACGGCGAAATTATCGAGGGCGACCTCAGGAGGGAAAGGTGTTC
CGGAAGCCCGAAGAGACCACGGAGCTCTACCGGTTGGCGGCGGTTGTTGA
GGGCAACGAGTACGCCCGACAGTTGGTGTTCCGGAAGCCCGAAGAGACCA
CGGAGCTCTACCGGTTGGCGGCGGTTGTTGAGGGCAACGAGTACGCCCGA
CAGTTGGAGGTGAGAGGTGA
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