mRNA_L-elsbetiae_contig1967.5868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1967.5868.1
Unique NamemRNA_L-elsbetiae_contig1967.5868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1967.5868.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.700e-14
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    4 AEPVLAGRKIVRQLMHVNGVEADELTLTELRASLLSEDALSLAQEGQEHDDTAAVSYVFCHVPI 195
            A P+ AGRK+VRQLM VNGVEADELTL E  AS+LSEDALSLAQEG    DTAAVSY  CHV +
Sbjct: 1027 AMPMPAGRKMVRQLMFVNGVEADELTLAE--ASVLSEDALSLAQEG----DTAAVSYAVCHVSV 1084
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BLAST of mRNA_L-elsbetiae_contig1967.5868.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.620e-11
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 AEPVLAGRKIVRQLMHVNGVEADELTLTELRASLLSEDALSLAQEGQEHDDTAA 165
            A P+ AGRK+VRQLM VNGVEADELTL EL AS+LSEDALSLAQEG    DTAA
Sbjct:  995 AMPMPAGRKMVRQLMFVNGVEADELTLAELHASVLSEDALSLAQEG----DTAA 1044
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1967.5868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA82_9PHAE8.700e-1473.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZC5_ECTSI3.620e-1177.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1967contigL-elsbetiae_contig1967:14629..16654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size677
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1967.5868.1prot_L-elsbetiae_contig1967.5868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1967 14629..16654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.1172903-CDS-L-elsbetiae_contig1967:14628..147181622815815.1172903-CDS-L-elsbetiae_contig1967:14628..14718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 14629..14718 +
1691683120.6255717-CDS-L-elsbetiae_contig1967:14628..147181691683120.6255717-CDS-L-elsbetiae_contig1967:14628..14718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 14629..14718 +
1622815815.1311362-CDS-L-elsbetiae_contig1967:15107..155391622815815.1311362-CDS-L-elsbetiae_contig1967:15107..15539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 15108..15539 +
1691683120.6350346-CDS-L-elsbetiae_contig1967:15107..155391691683120.6350346-CDS-L-elsbetiae_contig1967:15107..15539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 15108..15539 +
1622815815.1446502-CDS-L-elsbetiae_contig1967:16501..166541622815815.1446502-CDS-L-elsbetiae_contig1967:16501..16654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 16502..16654 +
1691683120.6454568-CDS-L-elsbetiae_contig1967:16501..166541691683120.6454568-CDS-L-elsbetiae_contig1967:16501..16654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 16502..16654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1967.5868.1

>prot_L-elsbetiae_contig1967.5868.1 ID=prot_L-elsbetiae_contig1967.5868.1|Name=mRNA_L-elsbetiae_contig1967.5868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
VAEPVLAGRKIVRQLMHVNGVEADELTLTELRASLLSEDALSLAQEGQEH
DDTAAVSYVFCHVPISVAEAEAEAAAAAAAAQPAAQQAASATAAPALAVA
VAPAAPGPQQAAQAPAAAAGAAAAVAAGGGAPATGVGRALPVTPRLGGGA
QPPPPVAAAATAAELPAEPSTPGQVGATNHQDAGKADTTVSSAPARPAAA
AAAAARGDNGHHTKKLRNGGGNGPA
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mRNA from alignment at L-elsbetiae_contig1967:14629..16654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1967.5868.1 ID=mRNA_L-elsbetiae_contig1967.5868.1|Name=mRNA_L-elsbetiae_contig1967.5868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2026bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:14629..16654+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCGGAGCCCGTGCTCGCCGGTCGGAAGATTGTGCGGCAGCTGATGCA
CGTCAACGGCGTCGAGGCGGACGAGCTCACCCTCACGGAGGTGCGAGTGC
GTCAGGGTTGGTTCCAAAAGGTTCAAGGGGGCGCGGTGAATGGGAGGCGC
TTCACCGTGGGTAGGGTACCTTTGATTGAGAACAACAATTTCTGCACAAC
ATTTTATGTAACCATGATCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGNNNNNNNNNGTTTCTCGTT
CCCACGTGGGTTATGTTCCATTTTCTCCTATACCAATTCTTTCCTCTTTT
TCTGTTTTAATTCCCTTTCTCCCCCCCCCCCCCCCCCCCCCCGGCCCCGC
GCCCCTCTCGCCGCTTGCTGCCGGTCCAGCTCCGCGCAAGCCTCCTCTCC
GAAGACGCCCTCAGCCTGGCCCAAGAAGGCCAAGAACACGACGACACCGC
GGCGGTGAGCTACGTCTTCTGCCACGTGCCTATCTCGGTCGCCGAGGCCG
AGGCCGAGGCAGCGGCAGCGGCAGCGGCAGCTCAACCCGCCGCACAACAA
GCAGCATCCGCAACGGCAGCGCCAGCACTGGCAGTGGCAGTGGCACCGGC
AGCACCAGGACCGCAACAGGCAGCGCAGGCACCAGCAGCTGCTGCCGGCG
CCGCCGCCGCTGTTGCTGCTGGTGGTGGTGCCCCTGCCACAGGTGTTGGT
CGTGCCCTGCCCGTTACTCCTCGGTTGGGAGGTGGAGCACAACCACCGCC
CCCTGTGGCCGCAGCAGCAACGGCAGCAGAATTGCCGGCAGAGCCTTCGA
CGCCTGGGCAGGTATGTGCGAACCAATGTGGTGTGAGTGTGTGTGTGTGT
GTGGTGTGTGCGTGTGGTGTGTGTGTGCGGTGTGCGGTGTATTTGTGTGT
GCGTGTGTGTGTCATGTGTCGCTTAATGGTGGCGCCTCCGTTGTACAACT
CAGAGTATTATTTCACTCGAGCGTGTGATATGATGGGTACAAGGCGATGG
TTTCCTACGTGCGGGGTTCACCCGGTCGATCGTTTGGCGCGGGAGATAGC
CGATGGGTGCCGATCGTAAAGCCGTTTTTTCCAACTTGTCCATCACCCGG
CACCGACGAGGCGGCGATGGGAGTCATTCGGGCAATACACAAAGGTGTTG
TTGGCTCTTTCAACCAGTCGCGGAGCGTTCATTGGCTGTTGCTCGCTTTG
ATTTCGTGCTCGGTTTCTTCCCATAGTTCGTATTTCGTTACTTACTTTCT
GATGGGCAGATGGATATTGACAGTTTCATGGGGGGTGAAATGTTGTGGCG
CTACGGTAGCGCCCGACTCCCTGAACGTCTGGGGTATCTACCCGGCAATA
TTGTTTCTGTTAACGGAAAGTCGGGCCGAAAAAGTGGGTTGTCTAGCCTC
TTGGGAAGGCGGCAAGCGTCTATGACCGGGGCCCCTGACATGCATACGAA
GGCAAGCCGCAAAGGCTTCTCTGTCCCTCGTGCCAGGGTGAAGCCCAAGC
GTGTTGGCTCTCGCTTCCGAGCATACCATGTCCCCCTCTGCAGTCCAAGA
TCTTGGGGGCGACTTTTCTCTTCCTGCGCCAGGCCAACCTTTCCGCACGC
ACACGCTTACACACACGGCTGAATGCTGCCTTGCTTTTGCTTGCTCGCTC
ATCATCGATGGCACGGCTGAGTCGTCAACATGGCGATGCTGAACATGCCT
TGCCCACGCCAGCCTACGGGCTTGGCTAACCCCAAAGCCTATCTCGGCCT
GTTGCCCGTCTTTGCTCGTTCAGGTCGGTGCCACTAACCACCAAGACGCA
GGAAAGGCTGACACTACTGTTTCGAGCGCGCCAGCACGGCCCGCGGCGGC
GGCGGCGGCGGCGGCCAGAGGTGACAATGGTCATCACACAAAAAAACTCA
GAAACGGAGGCGGAAATGGTCCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1967:14629..16654+

>mRNA_L-elsbetiae_contig1967.5868.1 ID=mRNA_L-elsbetiae_contig1967.5868.1|Name=mRNA_L-elsbetiae_contig1967.5868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:14629..16654+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCGGAGCCCGTGCTCGCCGGTCGGAAGATTGTGCGGCAGCTGATGCA
CGTCAACGGCGTCGAGGCGGACGAGCTCACCCTCACGGAGGTTGCGGAGC
CCGTGCTCGCCGGTCGGAAGATTGTGCGGCAGCTGATGCACGTCAACGGC
GTCGAGGCGGACGAGCTCACCCTCACGGAGCTCCGCGCAAGCCTCCTCTC
CGAAGACGCCCTCAGCCTGGCCCAAGAAGGCCAAGAACACGACGACACCG
CGGCGGTGAGCTACGTCTTCTGCCACGTGCCTATCTCGGTCGCCGAGGCC
GAGGCCGAGGCAGCGGCAGCGGCAGCGGCAGCTCAACCCGCCGCACAACA
AGCAGCATCCGCAACGGCAGCGCCAGCACTGGCAGTGGCAGTGGCACCGG
CAGCACCAGGACCGCAACAGGCAGCGCAGGCACCAGCAGCTGCTGCCGGC
GCCGCCGCCGCTGTTGCTGCTGGTGGTGGTGCCCCTGCCACAGGTGTTGG
TCGTGCCCTGCCCGTTACTCCTCGGTTGGGAGGTGGAGCACAACCACCGC
CCCCTGTGGCCGCAGCAGCAACGGCAGCAGAATTGCCGGCAGAGCCTTCG
ACGCCTGGGCAGCTCCGCGCAAGCCTCCTCTCCGAAGACGCCCTCAGCCT
GGCCCAAGAAGGCCAAGAACACGACGACACCGCGGCGGTGAGCTACGTCT
TCTGCCACGTGCCTATCTCGGTCGCCGAGGCCGAGGCCGAGGCAGCGGCA
GCGGCAGCGGCAGCTCAACCCGCCGCACAACAAGCAGCATCCGCAACGGC
AGCGCCAGCACTGGCAGTGGCAGTGGCACCGGCAGCACCAGGACCGCAAC
AGGCAGCGCAGGCACCAGCAGCTGCTGCCGGCGCCGCCGCCGCTGTTGCT
GCTGGTGGTGGTGCCCCTGCCACAGGTGTTGGTCGTGCCCTGCCCGTTAC
TCCTCGGTTGGGAGGTGGAGCACAACCACCGCCCCCTGTGGCCGCAGCAG
CAACGGCAGCAGAATTGCCGGCAGAGCCTTCGACGCCTGGGCAGGTCGGT
GCCACTAACCACCAAGACGCAGGAAAGGCTGACACTACTGTTTCGAGCGC
GCCAGCACGGCCCGCGGCGGCGGCGGCGGCGGCGGCCAGAGGTGACAATG
GTCATCACACAAAAAAACTCAGAAACGGAGGCGGAAATGGTCCCGCCGTC
GGTGCCACTAACCACCAAGACGCAGGAAAGGCTGACACTACTGTTTCGAG
CGCGCCAGCACGGCCCGCGGCGGCGGCGGCGGCGGCGGCCAGAGGTGACA
ATGGTCATCACACAAAAAAACTCAGAAACGGAGGCGGAAATGGTCCCGCC
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