mRNA_L-elsbetiae_contig1967.5867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1967.5867.1
Unique NamemRNA_L-elsbetiae_contig1967.5867.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1967.5867.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 9.190e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   94 SRTRRMCNPRCLDELLDCLVEHRNEDGRPMLYLND 198
            +R   +CNPRCLDELLD LVE+R++DGRP+LY ND
Sbjct:  842 ARVSGLCNPRCLDELLDSLVEYRDDDGRPILYFND 876
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BLAST of mRNA_L-elsbetiae_contig1967.5867.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.260e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   94 SRTRRMCNPRCLDELLDCLVEHRNEDGRPMLYLND 198
            +R   +CNPRCLDELLD LVE+R++DGRP+LY ND
Sbjct:  874 ARVAGLCNPRCLDELLDSLVEYRDDDGRPILYFND 908
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1967.5867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZC5_ECTSI9.190e-868.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA82_9PHAE9.260e-868.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1967contigL-elsbetiae_contig1967:12364..13084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.0748239-CDS-L-elsbetiae_contig1967:12363..125391622815815.0748239-CDS-L-elsbetiae_contig1967:12363..12539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 12364..12539 +
1691683120.6056378-CDS-L-elsbetiae_contig1967:12363..125391691683120.6056378-CDS-L-elsbetiae_contig1967:12363..12539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 12364..12539 +
1622815815.085584-CDS-L-elsbetiae_contig1967:12998..130831622815815.085584-CDS-L-elsbetiae_contig1967:12998..13083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 12999..13083 +
1691683120.6155038-CDS-L-elsbetiae_contig1967:12998..130831691683120.6155038-CDS-L-elsbetiae_contig1967:12998..13083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 12999..13083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1967.5867.1prot_L-elsbetiae_contig1967.5867.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1967 12364..13083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1967.5867.1

>prot_L-elsbetiae_contig1967.5867.1 ID=prot_L-elsbetiae_contig1967.5867.1|Name=mRNA_L-elsbetiae_contig1967.5867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
PSGSEGGEEAKVDAEEEGAGGGGAAAARGVESRTRRMCNPRCLDELLDCL
VEHRNEDGRPMLYLNDEAKAVVAGGGGGGGGGGSSDD
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mRNA from alignment at L-elsbetiae_contig1967:12364..13084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1967.5867.1 ID=mRNA_L-elsbetiae_contig1967.5867.1|Name=mRNA_L-elsbetiae_contig1967.5867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=721bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:12364..13084+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAGTGGGAGTGAGGGAGGAGAAGAGGCGAAGGTGGACGCGGAAGAAGA
GGGGGCGGGGGGAGGTGGCGCCGCCGCCGCGAGGGGTGTGGAGTCGAGGA
CGCGGAGGATGTGCAACCCTAGGTGCCTGGACGAGTTGCTCGACTGTCTG
GTGGAGCACAGGAACGAAGATGGCCGGTGGGTGTTTGTTTTCGCGTGTGT
TGTGCCTTCCGTTCTCTTTTGGTCCGATCTGTTTGCGTGTACGTGCGCAT
GTCGAAAAAGGGTACCATAGATATTTCTGTACATATTCGATGTCGACCTC
GTAATTTAAGCCCGAAAGCTTGAGGTGTACCTCTGATCTCCGGCTCTGTG
GACAAGGACTACGATGCTCTCCTGCAGATGGCCAATGAACCCCCCCCCCC
GCCAATCCAAAACTAGACTTTCGTAACCCCCCTGTCTCTACCTCGAGTAC
AGACGCGGAGGTAACAGTCGGTTGGGTCAATCGCCGAGGCTTTTCCAATG
GCTTACGTACGAACGCGCACGATGAAAATATCCCCATCCCCGGATATTCG
CTTCACGCCGTTTTCCAATGCCCCGCTGCTTTACAACCCCCCGCCGCCCC
CGCCGCCCACTCTTCCCTGCGCACCAACCTTGCAGGCCTATGCTGTATTT
GAACGACGAGGCTAAGGCCGTGGTAGCAGGCGGCGGCGGCGGCGGCGGCG
GCGGTGGCAGCAGCGACGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1967:12364..13084+

>mRNA_L-elsbetiae_contig1967.5867.1 ID=mRNA_L-elsbetiae_contig1967.5867.1|Name=mRNA_L-elsbetiae_contig1967.5867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:12364..13084+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAGTGGGAGTGAGGGAGGAGAAGAGGCGAAGGTGGACGCGGAAGAAGA
GGGGGCGGGGGGAGGTGGCGCCGCCGCCGCGAGGGGTGTGGAGTCGAGGA
CGCGGAGGATGTGCAACCCTAGGTGCCTGGACGAGTTGCTCGACTGTCTG
GTGGAGCACAGGAACGAAGATGGCCGCCGAGTGGGAGTGAGGGAGGAGAA
GAGGCGAAGGTGGACGCGGAAGAAGAGGGGGCGGGGGGAGGTGGCGCCGC
CGCCGCGAGGGGTGTGGAGTCGAGGACGCGGAGGATGTGCAACCCTAGGT
GCCTGGACGAGTTGCTCGACTGTCTGGTGGAGCACAGGAACGAAGATGGC
CGGCCTATGCTGTATTTGAACGACGAGGCTAAGGCCGTGGTAGCAGGCGG
CGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCGACGACGCCTATGCTGTAT
TTGAACGACGAGGCTAAGGCCGTGGTAGCAGGCGGCGGCGGCGGCGGCGG
CGGCGGTGGCAGCAGCGACGAC
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