mRNA_L-elsbetiae_contig1967.5865.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1967.5865.1
Unique NamemRNA_L-elsbetiae_contig1967.5865.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1967.5865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1967contigL-elsbetiae_contig1967:134..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1967.5865.1prot_L-elsbetiae_contig1967.5865.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1967 145..456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.1849422-UTR-L-elsbetiae_contig1967:133..1441622815815.1849422-UTR-L-elsbetiae_contig1967:133..144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1967 134..144 +
1691683120.6558945-UTR-L-elsbetiae_contig1967:133..1441691683120.6558945-UTR-L-elsbetiae_contig1967:133..144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1967 134..144 +
1622815815.2108855-UTR-L-elsbetiae_contig1967:456..5121622815815.2108855-UTR-L-elsbetiae_contig1967:456..512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1967 457..512 +
1691683120.6783369-UTR-L-elsbetiae_contig1967:456..5121691683120.6783369-UTR-L-elsbetiae_contig1967:456..512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1967 457..512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.1955674-CDS-L-elsbetiae_contig1967:144..4561622815815.1955674-CDS-L-elsbetiae_contig1967:144..456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 145..456 +
1691683120.668841-CDS-L-elsbetiae_contig1967:144..4561691683120.668841-CDS-L-elsbetiae_contig1967:144..456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1967 145..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1967.5865.1

>prot_L-elsbetiae_contig1967.5865.1 ID=prot_L-elsbetiae_contig1967.5865.1|Name=mRNA_L-elsbetiae_contig1967.5865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MLKKLPFLVGAPCPRPSIFAYPSKKIMPRELLQHQTAAAAAAAAGKRAHK
KNRNAHWTHRKRPSETSNSEAHHINPSKTPQREESRGVRLKTKKRDHSRH
PFI*
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mRNA from alignment at L-elsbetiae_contig1967:134..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1967.5865.1 ID=mRNA_L-elsbetiae_contig1967.5865.1|Name=mRNA_L-elsbetiae_contig1967.5865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:134..512+ (Laminarionema elsbetiae ELsaHSoW15)
TGTAGATATCCATGTTGAAAAAGCTGCCGTTTTTAGTTGGGGCACCGTGT
CCCCGCCCTAGTATTTTTGCGTACCCAAGCAAAAAAATAATGCCGAGAGA
GCTGCTGCAGCACCAAACGGCGGCCGCAGCAGCAGCAGCAGCAGGCAAGC
GCGCTCACAAGAAGAACAGAAACGCGCACTGGACACACAGAAAACGGCCA
TCAGAAACAAGTAACTCGGAGGCGCACCATATAAACCCGTCAAAAACACC
CCAAAGAGAAGAGAGTCGCGGGGTTAGGTTAAAAACAAAAAAACGAGATC
ACAGCAGACATCCATTCATATGATACCAACACACGAACGTAAATAAAAAA
AAGAACGTGACTGCTATACCCTACATGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1967:134..512+

>mRNA_L-elsbetiae_contig1967.5865.1 ID=mRNA_L-elsbetiae_contig1967.5865.1|Name=mRNA_L-elsbetiae_contig1967.5865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1967:134..512+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAAAAAGCTGCCGTTTTTAGTTGGGGCACCGTGTCCCCGCCCTAG
TATTTTTGCGTACCCAAGCAAAAAAATAATGCCGAGAGAGCTGCTGCAGC
ACCAAACGGCGGCCGCAGCAGCAGCAGCAGCAGGCAAGCGCGCTCACAAG
AAGAACAGAAACGCGCACTGGACACACAGAAAACGGCCATCAGAAACAAG
TAACTCGGAGGCGCACCATATAAACCCGTCAAAAACACCCCAAAGAGAAG
AGAGTCGCGGGGTTAGGTTAAAAACAAAAAAACGAGATCACAGCAGACAT
CCATTCATATGAATGTTGAAAAAGCTGCCGTTTTTAGTTGGGGCACCGTG
TCCCCGCCCTAGTATTTTTGCGTACCCAAGCAAAAAAATAATGCCGAGAG
AGCTGCTGCAGCACCAAACGGCGGCCGCAGCAGCAGCAGCAGCAGGCAAG
CGCGCTCACAAGAAGAACAGAAACGCGCACTGGACACACAGAAAACGGCC
ATCAGAAACAAGTAACTCGGAGGCGCACCATATAAACCCGTCAAAAACAC
CCCAAAGAGAAGAGAGTCGCGGGGTTAGGTTAAAAACAAAAAAACGAGAT
CACAGCAGACATCCATTCATATGA
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