mRNA_L-elsbetiae_contig19668.5863.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19668.5863.1
Unique NamemRNA_L-elsbetiae_contig19668.5863.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.820e-33
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGDKEASELWAFSAAILPWIAECDADVAATVRANSDISVATAP 298
            +N+ LL +W TGQ +LLAGEC  A A+I E+  LMAVPLIQG+ RY YLADP  G GGDKEA+ELWAFSAAILPWI+ CDA V  TVR N+++  A+AP
Sbjct:   31 INSELLTLWETGQANLLAGECTEASAVIDEILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSAAILPWISACDAAVGTTVRDNTELGSASAP 129          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 7.250e-30
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGDKEASELWAFSAAILPWIAECDADVAATVRANSDISVATAP 298
            +N+ LL +W TGQ  LLA EC  A A+I ++  LMAVPLIQG+ RY YLADP  G GGDKEA+ELWAFSA+ILPWI+ CDA V   VR N+++  A+AP
Sbjct:  243 INSELLTLWETGQASLLAEECTEASAVIDQILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISTCDAAVGTKVRDNTELGSASAP 341          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.510e-27
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGDKEASELWAFSAAILPWIAECDADVAATVRANSDISVATAP 298
            VN+ +L+++  GQ +LL G+C AAG +  ++  LM VPL+QG+ RY Y ADP+ G GGDK A+ELWAFSAA+LP I ECD +VA  VRAN+DI+ A AP
Sbjct:  232 VNSDMLELYKEGQVYLLDGDCGAAGDVKDKIIDLMGVPLVQGMLRYFYNADPEAGDGGDKAAAELWAFSAAMLPRINECDEEVATLVRANTDIASADAP 330          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: D8LDE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.670e-19
Identity = 52/100 (52.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGD-KEASELWAFSAAILPWIAECDADVAATVRANSDISVATAP 298
            +N  +L++   G  +LL G+CA A      +  LMAV L+QG  RYLY ADP     GD K  +ELWAF+AAILP I EC ADVA TVR+NSDI    AP
Sbjct:   56 INDDVLELIVAGSGYLLEGKCAEAEDAQGRIVQLMAVLLLQGTLRYLYRADPASDYDGDAKHWAELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAP 155          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.570e-18
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGD-KEASELWAFSAAILPWIAECDADVAATVRANSDISVATAP 298
            +N  +L++   G  +LL G+CA A      +  LM VPL+Q   RYLY ADP     GD K  +ELWAF+AAILP I EC ADVA TVR+NSDI    AP
Sbjct:  232 INDDILELIGAGSGYLLEGKCAEAEEAKESIVQLMTVPLVQATLRYLYRADPASDYDGDAKHWAELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAP 331          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: A0A7S2V1S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.710e-17
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGDKEASELWAFSAAILPWIAECDADVAATVRANSDI 280
            VN  ++D++  G   L  G+C     +   +   M +PL+QG  RYLY ADP+G   G+K  +ELWAFSAA+LP IAECD+ VA+ +R NS I
Sbjct:  462 VNERIIDLFRDGSVKLHNGDCGEVEKVKNAIVDQMTIPLVQGTLRYLYKADPKGANEGNKARAELWAFSAAVLPRIAECDSGVASMLRENSYI 554          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: A0A7S1IQR3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQR3_9EUGL)

HSP 1 Score: 82.4 bits (202), Expect = 3.070e-16
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAGGDKEASELWAFSAAILPWIAECDADVAATVRANSDISVAT 292
            VN A+L ++  GQ  L+AG C AA A    +A  M VP++QG+ RY + ADP  G  G KE +E WAF+  ILP I  C    AA VR N DI+  T
Sbjct:  213 VNAAVLQLFKDGQALLVAGSCDAAQAKADAIARQMLVPMLQGMLRYAWKADPVNGVSGPKEVAEGWAFTRGILPQIHSCSPRAAAVVRRNMDIAAGT 309          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: A0A8J2WQT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQT1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.590e-13
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAG-------------GD---KEASELWAFSAAILPWIAECDADVAATVRANSDISVAT 292
            VN  LL  +  G++ ++A +CA A  L+ ++  LM VPL+QG  +Y Y ADP    G              D   K  +E WAF+AA+LP IAECD  VA  +R + DI  AT
Sbjct:  934 VNVQLLAKFIEGRDKIIAADCAGAEPLVEDIRKLMTVPLVQGTLKYAYKADPANAGGECVADAGMNAMTASDGCVKSWAEAWAFAAAVLPQIAECDWGVAEKIRYSLDIEAAT 1046          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: A0A7S1IQD7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQD7_9EUGL)

HSP 1 Score: 70.9 bits (172), Expect = 3.510e-12
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:    2 VNTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADP---QGGAGGDKEASELWAFSAAILPWIAECDADVAATVRANSDISVAT 292
            VN A+L ++  GQ  L+AG C AA A    +A  M VP++QG+ RY + ADP   +    G KE +E WAF+  ILP +  C+   A  V+ N DI+ AT
Sbjct:  213 VNAAVLQLFKDGQALLVAGSCDAAQAKADAIARQMLVPMLQGMLRYAWKADPANSEEARRGPKEYAEGWAFARGILPQLDSCNPQGATLVQRNMDIAAAT 312          
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Match: A0A8J2SAQ3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAQ3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-9
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 2
Query:    5 NTALLDMWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQ--GGAGGD-------------KEASELWAFSAAILPWIAECDADVAATVRANSD 277
            N  L+  + +G++ ++A +CA A  +I ++   M +PLIQG  +Y + ADP   G    D             K  +E WAF+AA+LP + +CD +VA+ VR N D
Sbjct:  260 NVGLVTDFKSGRDKIIAADCAGAEPVIDDIIKKMTIPLIQGTIKYAWKADPANAGDCSADAGKTALTASDDCVKSWTEGWAFAAALLPQLDQCDPEVASVVRHNLD 365          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19668.5863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KYS6_9PHAE4.820e-3364.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ42_ECTSI7.250e-3060.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFX4_ECTSI5.510e-2756.57Probable high CO2 inducible periplasmic protein n=... [more]
D8LDE2_ECTSI2.670e-1952.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDE3_ECTSI1.570e-1851.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V1S6_9STRA4.710e-1746.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1IQR3_9EUGL3.070e-1646.39Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J2WQT1_9STRA1.590e-1339.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1IQD7_9EUGL3.510e-1242.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J2SAQ3_9STRA1.250e-934.91Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19668contigL-elsbetiae_contig19668:605..1233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog2880.D8LQ42
Hectar predicted targeting categoryother localisation
EggNOG OGs29F58@1,2RNAK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19668.5863.1prot_L-elsbetiae_contig19668.5863.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19668 627..1233 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.9316752-UTR-L-elsbetiae_contig19668:604..6261622815814.9316752-UTR-L-elsbetiae_contig19668:604..626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19668 605..626 +
1691683120.5173259-UTR-L-elsbetiae_contig19668:604..6261691683120.5173259-UTR-L-elsbetiae_contig19668:604..626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19668 605..626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.941863-CDS-L-elsbetiae_contig19668:626..7391622815814.941863-CDS-L-elsbetiae_contig19668:626..739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19668 627..739 +
1691683120.5282416-CDS-L-elsbetiae_contig19668:626..7391691683120.5282416-CDS-L-elsbetiae_contig19668:626..739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19668 627..739 +
1622815814.9534721-CDS-L-elsbetiae_contig19668:1070..12331622815814.9534721-CDS-L-elsbetiae_contig19668:1070..1233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19668 1071..1233 +
1691683120.5370638-CDS-L-elsbetiae_contig19668:1070..12331691683120.5370638-CDS-L-elsbetiae_contig19668:1070..1233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19668 1071..1233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19668.5863.1

>prot_L-elsbetiae_contig19668.5863.1 ID=prot_L-elsbetiae_contig19668.5863.1|Name=mRNA_L-elsbetiae_contig19668.5863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MWHTGQEHLLAGECAAAGALIPEMASLMAVPLIQGVQRYLYLADPQGGAG
GDKEASELWAFSAAILPWIAECDADVAATVRANSDISVATAP
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mRNA from alignment at L-elsbetiae_contig19668:605..1233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19668.5863.1 ID=mRNA_L-elsbetiae_contig19668.5863.1|Name=mRNA_L-elsbetiae_contig19668.5863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=629bp|location=Sequence derived from alignment at L-elsbetiae_contig19668:605..1233+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCAACACCGCACTCCTGGACATGTGGCACACCGGGCAGGAGCACCTGC TGGCCGGGGAATGCGCCGCAGCCGGGGCATTGATCCCCGAGATGGCTTCG CTCATGGCTGTGCCTCTCATCCAGGGTGTGCAGAGGTAAGTTGCAAGCCT TTTTATACCTATCGCGCCGACAAAGCAAACTCACATTCGACCCGCGAGTC TTGAAGCAAGCAAGCAAGCAAGTTGATTGCGACGCGTCTGTTCGGCCGAA TGTGGTGTCAATCCACGGCTTCGCACCTTGCCGTACGCCAGTCTTTTCCT CTTGTCTTTCAAGGGACTTCCATCCTGCATCAACTGCTATCTCTCGCTGA TTTCCGACTGCTCCTTTCTCACGGCGCGCTTTTCCTCTCTCTCTGCGCAA CGCCCCAACATTCGTGTTTTGTTTTCCTTTACCTTCTCGCCCCCATTGAC GCTTTTGATGATGCAGGTACCTCTACCTCGCTGATCCCCAGGGCGGAGCA GGCGGTGACAAAGAGGCCTCCGAGCTTTGGGCCTTCTCCGCTGCTATCCT CCCCTGGATTGCCGAGTGCGACGCCGACGTCGCGGCCACCGTGCGTGCCA ACTCGGATATCTCCGTGGCAACCGCGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19668:605..1233+

>mRNA_L-elsbetiae_contig19668.5863.1 ID=mRNA_L-elsbetiae_contig19668.5863.1|Name=mRNA_L-elsbetiae_contig19668.5863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig19668:605..1233+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCACACCGGGCAGGAGCACCTGCTGGCCGGGGAATGCGCCGCAGC
CGGGGCATTGATCCCCGAGATGGCTTCGCTCATGGCTGTGCCTCTCATCC
AGGGTGTGCAGAGATGTGGCACACCGGGCAGGAGCACCTGCTGGCCGGGG
AATGCGCCGCAGCCGGGGCATTGATCCCCGAGATGGCTTCGCTCATGGCT
GTGCCTCTCATCCAGGGTGTGCAGAGGTACCTCTACCTCGCTGATCCCCA
GGGCGGAGCAGGCGGTGACAAAGAGGCCTCCGAGCTTTGGGCCTTCTCCG
CTGCTATCCTCCCCTGGATTGCCGAGTGCGACGCCGACGTCGCGGCCACC
GTGCGTGCCAACTCGGATATCTCCGTGGCAACCGCGCCCGTACCTCTACC
TCGCTGATCCCCAGGGCGGAGCAGGCGGTGACAAAGAGGCCTCCGAGCTT
TGGGCCTTCTCCGCTGCTATCCTCCCCTGGATTGCCGAGTGCGACGCCGA
CGTCGCGGCCACCGTGCGTGCCAACTCGGATATCTCCGTGGCAACCGCGC
CC
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