mRNA_L-elsbetiae_contig19667.5862.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19667.5862.1
Unique NamemRNA_L-elsbetiae_contig19667.5862.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19667.5862.1 vs. uniprot
Match: D7FQI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.160e-18
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  403 PVVTVPKKAEMAPPSKEDVLSPKHAEDVLVVGKGVVLTANVTSCDKVIVEGKFQGNIKTDTFVLTEG 603
            PV+      E   P KEDVL+ KH E VLVVGKGVVLTANVTSCDKV+VEG FQGNIKT TFVL+EG
Sbjct:   70 PVIAASTPQEEKMPDKEDVLAAKHEERVLVVGKGVVLTANVTSCDKVVVEGNFQGNIKTGTFVLSEG 136
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BLAST of mRNA_L-elsbetiae_contig19667.5862.1 vs. uniprot
Match: A0A6H5JYZ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.260e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:  442 PSKEDVLSPKHAEDVLVVGKGVVLTANVTSCDKVIVEGKFQGNIKTDTFVLTEG 603
            P++E VL+ KH E VLVVGKGVVLTANVTSCDKV+VEG FQGNI+T TFVL+EG
Sbjct:  209 PAEEGVLAAKHEERVLVVGKGVVLTANVTSCDKVVVEGNFQGNIETGTFVLSEG 262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19667.5862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQI6_ECTSI5.160e-1871.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYZ3_9PHAE4.260e-1577.78Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19667contigL-elsbetiae_contig19667:425..1607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-01_008800.1
Exons2
Model size1014
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19667.5862.1prot_L-elsbetiae_contig19667.5862.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19667 812..1382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.8583212-UTR-L-elsbetiae_contig19667:424..8111622815814.8583212-UTR-L-elsbetiae_contig19667:424..811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19667 425..811 -
1691683120.4717603-UTR-L-elsbetiae_contig19667:424..8111691683120.4717603-UTR-L-elsbetiae_contig19667:424..811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19667 425..811 -
1622815814.8933568-UTR-L-elsbetiae_contig19667:1382..16071622815814.8933568-UTR-L-elsbetiae_contig19667:1382..1607Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19667 1383..1607 -
1691683120.506752-UTR-L-elsbetiae_contig19667:1382..16071691683120.506752-UTR-L-elsbetiae_contig19667:1382..1607Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19667 1383..1607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.8694816-CDS-L-elsbetiae_contig19667:811..11661622815814.8694816-CDS-L-elsbetiae_contig19667:811..1166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19667 812..1166 -
1691683120.484945-CDS-L-elsbetiae_contig19667:811..11661691683120.484945-CDS-L-elsbetiae_contig19667:811..1166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19667 812..1166 -
1622815814.88282-CDS-L-elsbetiae_contig19667:1335..13821622815814.88282-CDS-L-elsbetiae_contig19667:1335..1382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19667 1336..1382 -
1691683120.4968908-CDS-L-elsbetiae_contig19667:1335..13821691683120.4968908-CDS-L-elsbetiae_contig19667:1335..1382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19667 1336..1382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19667.5862.1

>prot_L-elsbetiae_contig19667.5862.1 ID=prot_L-elsbetiae_contig19667.5862.1|Name=mRNA_L-elsbetiae_contig19667.5862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MLAKKGRSFSRKFSSSFAGDLAGGNSPTQLLTPSNNSLYRGAGLAATPQL
RQQAPHSPPPVVTVPKKAEMAPPSKEDVLSPKHAEDVLVVGKGVVLTANV
TSCDKVIVEGKFQGNIKTDTFVLTEGMYACDVT*
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mRNA from alignment at L-elsbetiae_contig19667:425..1607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19667.5862.1 ID=mRNA_L-elsbetiae_contig19667.5862.1|Name=mRNA_L-elsbetiae_contig19667.5862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1183bp|location=Sequence derived from alignment at L-elsbetiae_contig19667:425..1607- (Laminarionema elsbetiae ELsaHSoW15)
CGGGTCCATTTTATTTTTCGTATACCTTTTCTTAAGTATAAGTTAGCCTG
TGAACACGGGAATTGACCGCATCAAGTGTTGGATAAGTACGGACATTGAG
AGGTACTGGATGGAGACACACACATACATACAGACACACACGCGGCCCTC
TCTTTCTCTCTTTCCCTCTCTTCCCTCCGTTCCTGACCACGGCACGCTCT
TTCCCTCTCTTCCCTCCGTATTACAATGCTGGCGAAAAAGGGCAGATCGT
TTTCCAGGAAGTTCTCTTCGAGGTATGTCGGGCCTAGCGCGTGCGTGTAT
TGCCTCCAAGACACAACGAACACATCAAAATGTCGGATTCTTGTATCTTC
AATTTGGATTTGCTTATGCATCCCACCGCTTGAAGAAAAGCTGGTCCTGA
AGTTCTGAACCTTTTACCTATCTGTTGCTCCCACACCCCAGCTTTGCAGG
AGATTTGGCCGGCGGCAACTCTCCGACACAACTGCTCACCCCCAGTAACA
ACTCGCTCTACAGAGGGGCGGGGCTGGCCGCAACGCCTCAACTCCGCCAG
CAGGCTCCCCATTCGCCCCCGCCCGTAGTAACAGTGCCGAAGAAGGCCGA
GATGGCTCCGCCGTCGAAGGAAGACGTGTTGTCGCCGAAGCATGCCGAGG
ATGTGCTTGTGGTGGGCAAGGGAGTTGTGCTGACCGCGAACGTGACCTCT
TGCGACAAGGTTATCGTGGAGGGCAAGTTCCAGGGCAACATCAAGACCGA
CACTTTCGTGCTCACTGAAGGTATGTATGCATGTGACGTGACGTGACTTG
ACGTGACGTGACGTGAGGCAAGAATTAACCGAAACGAAAAGACCATCTCG
CTAACACCCCACGGCGGTCGACGCTACTATGTGCTACTGTACCTACATAC
ATACCACCAACAAAATGTGTGTTGTCGGCGTCATGGGGCTTTCTACGCCT
CGATCTCTTGTCCGTTACATGGCATGCGTACTACAGAGGATTTGTTGAGG
TGGCCCGCGTCCGAAAACGTTTTCTCCCCTTCCTCTACATACAACAACTT
CCTGAAGTCGTGGCCTCGAGCAGCAGTACATTAGCCTTCAATAGAATGGC
TCCCTTGCGGGTGACGGATATAAAATCACCGCAGTTGTTGAGGTACCAAG
GTTACGTAGTTCGTTGTGTTTACTGGTACGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19667:425..1607-

>mRNA_L-elsbetiae_contig19667.5862.1 ID=mRNA_L-elsbetiae_contig19667.5862.1|Name=mRNA_L-elsbetiae_contig19667.5862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig19667:425..1607- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGCGAAAAAGGGCAGATCGTTTTCCAGGAAGTTCTCTTCGAGATG
CTGGCGAAAAAGGGCAGATCGTTTTCCAGGAAGTTCTCTTCGAGCTTTGC
AGGAGATTTGGCCGGCGGCAACTCTCCGACACAACTGCTCACCCCCAGTA
ACAACTCGCTCTACAGAGGGGCGGGGCTGGCCGCAACGCCTCAACTCCGC
CAGCAGGCTCCCCATTCGCCCCCGCCCGTAGTAACAGTGCCGAAGAAGGC
CGAGATGGCTCCGCCGTCGAAGGAAGACGTGTTGTCGCCGAAGCATGCCG
AGGATGTGCTTGTGGTGGGCAAGGGAGTTGTGCTGACCGCGAACGTGACC
TCTTGCGACAAGGTTATCGTGGAGGGCAAGTTCCAGGGCAACATCAAGAC
CGACACTTTCGTGCTCACTGAAGGTATGTATGCATGTGACGTGACGTGAC
TTTGCAGGAGATTTGGCCGGCGGCAACTCTCCGACACAACTGCTCACCCC
CAGTAACAACTCGCTCTACAGAGGGGCGGGGCTGGCCGCAACGCCTCAAC
TCCGCCAGCAGGCTCCCCATTCGCCCCCGCCCGTAGTAACAGTGCCGAAG
AAGGCCGAGATGGCTCCGCCGTCGAAGGAAGACGTGTTGTCGCCGAAGCA
TGCCGAGGATGTGCTTGTGGTGGGCAAGGGAGTTGTGCTGACCGCGAACG
TGACCTCTTGCGACAAGGTTATCGTGGAGGGCAAGTTCCAGGGCAACATC
AAGACCGACACTTTCGTGCTCACTGAAGGTATGTATGCATGTGACGTGAC
GTGA
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