mRNA_L-elsbetiae_contig19664.5861.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19664.5861.1
Unique NamemRNA_L-elsbetiae_contig19664.5861.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19664.5861.1 vs. uniprot
Match: D8LMT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.650e-29
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:  142 VRLLCRDILSGCDHGHVHVLNFSPDMVGVPSMKASKYVGQPLSSVRWGLGAPYVASWTSSRGLLQVL 342
            V  + RDI+SGCDHGHVHVLNF  DM GVP+MK SKYV QPLSSVRWG+G PYVASWTSSRGLLQ L
Sbjct:  158 VNPVSRDIVSGCDHGHVHVLNFPWDMAGVPTMKVSKYVAQPLSSVRWGMGEPYVASWTSSRGLLQRL 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19664.5861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMT4_ECTSI5.650e-2979.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19664contigL-elsbetiae_contig19664:15..1977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat protein
Ec32 orthologEc-02_003580.1
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19664.5861.1prot_L-elsbetiae_contig19664.5861.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19664 15..1977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.8009734-CDS-L-elsbetiae_contig19664:14..1231622815814.8009734-CDS-L-elsbetiae_contig19664:14..123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19664 15..123 +
1691683120.4336126-CDS-L-elsbetiae_contig19664:14..1231691683120.4336126-CDS-L-elsbetiae_contig19664:14..123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19664 15..123 +
1622815814.8142562-CDS-L-elsbetiae_contig19664:669..8001622815814.8142562-CDS-L-elsbetiae_contig19664:669..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19664 670..800 +
1691683120.4440515-CDS-L-elsbetiae_contig19664:669..8001691683120.4440515-CDS-L-elsbetiae_contig19664:669..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19664 670..800 +
1622815814.824755-CDS-L-elsbetiae_contig19664:1875..19771622815814.824755-CDS-L-elsbetiae_contig19664:1875..1977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19664 1876..1977 +
1691683120.4540973-CDS-L-elsbetiae_contig19664:1875..19771691683120.4540973-CDS-L-elsbetiae_contig19664:1875..1977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19664 1876..1977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19664.5861.1

>prot_L-elsbetiae_contig19664.5861.1 ID=prot_L-elsbetiae_contig19664.5861.1|Name=mRNA_L-elsbetiae_contig19664.5861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
APGGGGGGGGGGGGGGGGRRGGGGGGGGGGGGGGGGVLRPNNSFTVSVRL
LCRDILSGCDHGHVHVLNFSPDMVGVPSMKASKYVGQPLSSVRWGLGAPY
VASWTSSRGLLQVL
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mRNA from alignment at L-elsbetiae_contig19664:15..1977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19664.5861.1 ID=mRNA_L-elsbetiae_contig19664.5861.1|Name=mRNA_L-elsbetiae_contig19664.5861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1963bp|location=Sequence derived from alignment at L-elsbetiae_contig19664:15..1977+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGTCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGTGCTTTGAAGTCGTGCTGGTGGTGCTGAAAGCGATCGAGT
TTGCTGGCGGCATGCGGCTCGCCCGATCTCTTTTGCTGGGGCTGCGGCGG
CGTTCATTGCATTGATGCCACGAGGCAGACCACCGTTGAAATAGTCGTGC
TATGACGGTGCTTGAGAGGGCATGCATACCTAGCAGTAGTGCAGATCGAG
CCGAATCTTGTGTTGCAGGCAGAGCGAGGCAAGCAGCACCGGTCTTCAGT
ACAATGAGTGCAATGATTACCTGCTGTCGAAATTCACTTTTCCACATCAT
ACGAAGTATGTACTGCAGCCACAAGTGCTGAGTATTCGGAAATGTTTCCT
GCAGTATCCTAAACTGCACAGGCTAGCATCGAGGTGCAGGTGCATGTCGT
TGTTGTTCTATCTGAGTCGATTGATCGAGAGAGAGAGAGAGAGAAATATA
AGGCTGGAATCAAGAAGCAAAGACGCCGGGTGATTGATCGATCGGCCGCT
CAGTATCTAGAAAAAGGCACCTCCCCGCCTCCTCGATCGGTTACTACTGT
GTAAGTTCTCCGTCCCAACAACTCCTTTACCGTGTCTGTCCGTCTGTTGT
GCAGGGATATCCTCTCGGGGTGTGACCACGGGCACGTGCACGTGCTCAAC
TTCTCGCCGGATATGGTGGGCGTCCCGTCGATGAAGGTGTGTGGGTCCGA
GGGTATGCATGCATGGTCTCGAAAACATTCGTTTTTCTGCGCGGTTTCAT
ACTTTTTTTTCTGCGTGATTTTCTAGATACATGCGGCGGCACCTGGTGCT
ATGTACTGCTGCTGAACTTTGAAAGCGGCGTTGTTGTTGGGGAGCATACC
GTGGGGGGCTCGGGGGTAAGCGCGCGGGGGGGGGGGGGGCGCCGCAGGCC
AAACGCTCGTAAAGGCTTCGAGAACCAAAGAACGAACGAACGCATAAAGC
AAAAGTAAGCGAGAGAGAACAGGTCGATAGATTATCACCGCGATTGCTTG
GCGCGGTGGGCAGGAAAACAGGGAACAAAAAGAGCAGCACTCGCTGCGGG
CCTGGCCGGCGAGAACCCGGCGCGGAACTCCCCGGCCTTGTTGGGGTACC
AAGATAGTGGTGTTGGCTGTTCCAGTTTTGTTTTACCTCACATCGCGTGT
AGACGGGAGCGAAGGGCTCCAGATTCGATATCTGTTTTATTGTTGCTTTG
CTGGCCCTTCGGGTCCATTTTATTTTTCGTGTACCTTTTCTTGGGTGTAA
GTTAGCCTGTGACCACGGGAATTGACCGCATCAAGTGTTGGGTTAGTACG
GACATCGAGAGGTACTGGATGGAGAGATCGGAGCGGTTTTTAATGTGAAG
ACAACATACAACAACATGCACATACACTCGCTACGTAGGACTTGGCTCTC
CTTGACATGACGACGGGCTGTTCACTTCATGCTTGAGAACGCCCATAAAA
ATACACCGTCAAAAGCGTCAGCCTGATCTGACGCCGCCAACCCCTCGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAACAAGCGCCC
CCACGCCGCGGGGGGGCCCCTTTGGGGGGGGGGAGGGGGGCCCGGGGGGG
CGGGCGCGGGGCTCTGGNNNNNNNNNNACGAGGGGCTGTTCACTTCCTGC
TTGAAAACCCCCAAAAAAAAACCCCCCCAAAAGCGGCCCCCTGATCTGCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGACGCGCACGTGACACA
CGAAAAACAAGGCCAGCAAGTACGTGGGGCAACCTTTGTCGAGCGTGAGA
TGGGGCCTCGGGGCGCCGTACGTGGCTTCGTGGACGTCCTCTCGAGGGCT
GCTGCAGGTGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19664:15..1977+

>mRNA_L-elsbetiae_contig19664.5861.1 ID=mRNA_L-elsbetiae_contig19664.5861.1|Name=mRNA_L-elsbetiae_contig19664.5861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig19664:15..1977+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGTCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGTCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGTTCTCCGTCCCAACAACTCCTTTACCGTGTCT
GTCCGTCTGTTGTGCAGGGATATCCTCTCGGGGTGTGACCACGGGCACGT
GCACGTGCTCAACTTCTCGCCGGATATGGTGGGCGTCCCGTCGATGAAGT
TCTCCGTCCCAACAACTCCTTTACCGTGTCTGTCCGTCTGTTGTGCAGGG
ATATCCTCTCGGGGTGTGACCACGGGCACGTGCACGTGCTCAACTTCTCG
CCGGATATGGTGGGCGTCCCGTCGATGAAGGCCAGCAAGTACGTGGGGCA
ACCTTTGTCGAGCGTGAGATGGGGCCTCGGGGCGCCGTACGTGGCTTCGT
GGACGTCCTCTCGAGGGCTGCTGCAGGTGCTGGCCAGCAAGTACGTGGGG
CAACCTTTGTCGAGCGTGAGATGGGGCCTCGGGGCGCCGTACGTGGCTTC
GTGGACGTCCTCTCGAGGGCTGCTGCAGGTGCTG
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