mRNA_L-elsbetiae_contig1966.5859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1966.5859.1
Unique NamemRNA_L-elsbetiae_contig1966.5859.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A6H5KJQ1_9PHAE (DHQ_synthase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJQ1_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 4.040e-52
Identity = 95/137 (69.34%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAWAMHGD 411
            IEM PAADIMHGEAVNVDGFLCLVIAKRR MI + VLDRVFRVM+SIGLPTIHE + + P +K                         GLADAVEHRHGKQRVPLLKGG+GSSVCVNDI+ DELKGAIAEAWA+HGD
Sbjct:  399 IEMEPAADIMHGEAVNVDGFLCLVIAKRRGMITEAVLDRVFRVMKSIGLPTIHESVQLAPMVK-------------------------GLADAVEHRHGKQRVPLLKGGIGSSVCVNDINPDELKGAIAEAWALHGD 510          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A7S0FNL6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FNL6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.040e-29
Identity = 62/130 (47.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAE 390
            +EMVP ADIMHGEAVNVDGF C+V+A  R  I + V+DRVF VMQS+ LPT                         +S  L S  A Q   DA+EHRHG+QR+PL+   +G S+CV+DI+ DEL  A+ E
Sbjct:   12 LEMVPGADIMHGEAVNVDGFFCVVLAYLRGFITKDVVDRVFAVMQSLSLPT-------------------------NSPDLESKLAWQSCKDAIEHRHGEQRIPLITD-IGESICVSDITPDELDRALEE 115          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A835YRH6_9STRA (DHQ_synthase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.050e-28
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAWAMH 405
            +EM P AD+MHGEAVNVDG LC+V+A  R +I   V DRVF  M+ +GLPT+H  +                    + A LA     QGLADAV+HR+G QR+PLL G +G++VCVNDI+  EL+ A A+ WAMH
Sbjct:  425 LEMEPGADLMHGEAVNVDGALCVVLAANRGLISAAVRDRVFAAMRGVGLPTLHPAV--------------------TPAALA-----QGLADAVQHRNGAQRIPLLTG-IGAAVCVNDITPAELEVACAQLWAMH 533          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A7S3YJ31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ31_HETAK)

HSP 1 Score: 114 bits (286), Expect = 3.750e-27
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAWAMH 405
            IEM P ADIMHGEAVN+DGFLC+V++ RR MI     DR+F  M+++ LPT  + + +   +K                         GLADAVEHRHG QR+PL+   +G SVCVND+S +EL+GA+A+  A+H
Sbjct:  364 IEMQPGADIMHGEAVNLDGFLCVVLSHRRGMITAAQRDRIFAAMRALNLPTTCDFMTIDVMMK-------------------------GLADAVEHRHGAQRIPLIDD-IGHSVCVNDLSREELEGALADLAALH 472          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A1Z5J835_FISSO (3-dehydroquinate synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J835_FISSO)

HSP 1 Score: 111 bits (278), Expect = 6.260e-26
Identity = 62/128 (48.44%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAI 384
            +EMVP ADIMHGEAVNVDGF C VI+  R  IP++ +DRVF+ M+SIGLPT                         +SA L S  A Q   DAVEHRHG+QR+PL+   +G S+CV+DI+ +EL  A+
Sbjct:  421 LEMVPGADIMHGEAVNVDGFFCCVISFLRGYIPRETVDRVFKCMKSIGLPT-------------------------NSADLDSELAWQSCKDAVEHRHGEQRIPLITD-IGESICVSDITPEELDRAL 522          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: W7TM66_9STRA (3-dehydroquinate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM66_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.930e-26
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPT-IHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSAR---QGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAWAMHG 408
            +EM+P  D+MHGEAVN+DGF  +++A+RR +      DR+F+VM++IGLPT +  G    P +                    +   +   +GL DAVEHRHG+QR+PL+ G +G SVCV+D++ +EL+GA+ E + +HG
Sbjct:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGT---PSLXXXXXXXXXXXXXXXXXXXQAEMVKMLWKGLEDAVEHRHGQQRLPLIVG-LGHSVCVSDVTREELEGAVDELYDVHG 136          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A2V3J638_9FLOR (2-epi-5-epi-valiolone synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J638_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 1.440e-24
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAWAMH 405
            +EMV    +MHGEAVN+DGFLC+++A R+  I  Q+ DRVF  M++IGLPT H        +K LTK                      +AD VEHRHGK R+PL+KG +GS   VN+ S D+LK  IA+A  +H
Sbjct:  307 LEMVANPPVMHGEAVNIDGFLCILLAHRKGWISTQLRDRVFSAMKNIGLPTWHPACD----LKVLTK---------------------AIADGVEHRHGKLRMPLVKGNIGSYGFVNECSEDDLKHVIAQAHQLH 416          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A4D9D105_9STRA (DHQ_synthase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D105_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.620e-24
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPT-IHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAWAMHG 408
            +EM+P  D+MHGEAVN+DGF  +++A+RR +      DR+F+VM++IGLPT +  G    P                           +GL DAVEHRHG+QR+PL+ G +G SVCV+D++ +EL+GA+ E + +HG
Sbjct:  473 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGPSSLPXXXXXXXXXXXXXXXXXXXXEMVKMLWKGLEDAVEHRHGQQRLPLIVG-LGHSVCVSDVTREELEGAVDELYDVHG 608          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A6U0RRJ8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0RRJ8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.610e-24
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAI 384
            +EMVP ADIMHGEAVNVDGFLC+V++  R  I  + ++RVF+ M+S+ LPT                         +S+ L S  A Q   DAVEHRHG+QR+PL+   +G S+CV+DI+++EL  AI
Sbjct:  428 LEMVPGADIMHGEAVNVDGFLCIVLSFLRGYIDMKTVNRVFKCMKSLSLPT-------------------------NSSDLTSELAWQSCKDAVEHRHGEQRIPLITE-IGESICVSDITSEELNRAI 529          
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Match: A0A8J9WYN3_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9WYN3_PHATR)

HSP 1 Score: 102 bits (253), Expect = 2.390e-23
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 IEMVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTIHEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQRVPLLKGGVGSSVCVNDISADELKGAIAEAW 396
            +EMVP ADIMHGEAVNVDGF C +++  R  IP++ + RV   MQS+ LPT                          SA L  + A Q   DAVEHRHG+QR+PL+   +G S+CV+DI+ +EL  A+ + W
Sbjct:  200 LEMVPGADIMHGEAVNVDGFFCCILSYLRGYIPRETVQRVLNCMQSLALPT-------------------------HSADLNPTLAWQSCKDAVEHRHGEQRIPLITE-IGESICVSDITQEELSRAL-DVW 304          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1966.5859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJQ1_9PHAE4.040e-5269.34DHQ_synthase domain-containing protein n=2 Tax=Ect... [more]
A0A7S0FNL6_9STRA8.040e-2947.69Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835YRH6_9STRA1.050e-2848.89DHQ_synthase domain-containing protein n=1 Tax=Tri... [more]
A0A7S3YJ31_HETAK3.750e-2745.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1Z5J835_FISSO6.260e-2648.443-dehydroquinate synthase n=2 Tax=Fistulifera sola... [more]
W7TM66_9STRA8.930e-2640.713-dehydroquinate synthase n=1 Tax=Nannochloropsis ... [more]
A0A2V3J638_9FLOR1.440e-2444.442-epi-5-epi-valiolone synthase n=1 Tax=Gracilariop... [more]
A0A4D9D105_9STRA6.620e-2441.61DHQ_synthase domain-containing protein n=1 Tax=Nan... [more]
A0A6U0RRJ8_9STRA7.610e-2445.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J9WYN3_PHATR2.390e-2343.18Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1966contigL-elsbetiae_contig1966:1040..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.9e-42
Seed eggNOG ortholog2880.D7G807
KEGG rclassRC00847,RC00848
KEGG koko:K01735,ko:K03785
KEGG ReactionR03083,R03084
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
EC4.2.1.10,4.2.3.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionSimilar to 2-Epi-5-Epi-Valiolone Synthase (Sedoheptulose 7-Phosphate Cyclase)
Ec32 orthologEc-06_009700.1
Exons2
Model size435
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1966.5859.1prot_L-elsbetiae_contig1966.5859.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1966 1046..2045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.5924394-UTR-L-elsbetiae_contig1966:1039..10451622815814.5924394-UTR-L-elsbetiae_contig1966:1039..1045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1966 1040..1045 +
1691683120.306549-UTR-L-elsbetiae_contig1966:1039..10451691683120.306549-UTR-L-elsbetiae_contig1966:1039..1045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1966 1040..1045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.6051679-CDS-L-elsbetiae_contig1966:1045..12041622815814.6051679-CDS-L-elsbetiae_contig1966:1045..1204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1966 1046..1204 +
1691683120.318125-CDS-L-elsbetiae_contig1966:1045..12041691683120.318125-CDS-L-elsbetiae_contig1966:1045..1204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1966 1046..1204 +
1622815814.6151338-CDS-L-elsbetiae_contig1966:1775..20451622815814.6151338-CDS-L-elsbetiae_contig1966:1775..2045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1966 1776..2045 +
1691683120.3263903-CDS-L-elsbetiae_contig1966:1775..20451691683120.3263903-CDS-L-elsbetiae_contig1966:1775..2045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1966 1776..2045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1966.5859.1

>prot_L-elsbetiae_contig1966.5859.1 ID=prot_L-elsbetiae_contig1966.5859.1|Name=mRNA_L-elsbetiae_contig1966.5859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MVPAADIMHGEAVNVDGFLCLVIAKRRSMIPQQVLDRVFRVMQSIGLPTI
HEGLVVRPCIKYLTKFPPPPYMSASSAPLASSSARQGLADAVEHRHGKQR
VPLLKGGVGSSVCVNDISADELKGAIAEAWAMHGDAAKHPSA*
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mRNA from alignment at L-elsbetiae_contig1966:1040..2045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1966.5859.1 ID=mRNA_L-elsbetiae_contig1966.5859.1|Name=mRNA_L-elsbetiae_contig1966.5859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1006bp|location=Sequence derived from alignment at L-elsbetiae_contig1966:1040..2045+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGAGATGGTGCCGGCGGCGGACATCATGCACGGGGAGGCGGTGAACGT GGACGGCTTCTTGTGCCTCGTGATCGCCAAGCGCCGCAGCATGATCCCGC AGCAGGTGCTCGACAGGGTGTTCCGCGTGATGCAGAGCATTGGTCTACCC ACCATCCACGAGGGCGTGGAGCTCGCGCTCATGGTCAAGGTAAGCCAGCG GCTCAAGGAGGAGTGACCGACCGCATGTCTTGGTCTTGGCGCTCGGGTAC GGTGTAGAGGAGCCTGGCCGGGCCTTTCAAGGCACGTTGAGGAGCGAGTG CGTGCTGCCTAGATGTCTGGCTTACATTTAGTAAATAACCCGGCTGGTCA GGTGTTCCCGTAACAGGTACTGATTTTTGCCCATCTCGGGCGGAAGGCTT ACACTGCTGTATGGCACTTTTAACACGCCGACAAACTTCCATAGGGCATG GCACATGGAAAATACACGGACACGCCGGACAAGATCAGGAACCGTTGCTT TGCTTGCCTACCCATCTGGCGGAGGGGCGCCGTCACTGCAGCCCCCGTCA CCGTGTAGCTAGGATGGGTTTCATTGGTTTTGCGCTCTGCTTAATACAGG CAGCAGTCATTTCCCCGTGAATTCCAGCCGGCATGCGCTTCTTTGGCGTA GACTTCGGGAAGGCTTGTGAGGCATCTGTCCTCATCCCCCCCAACCCCTG CTTCGTCTCCAAGTGTTCTCCGCACCCCCCTGAAAGCTAGTAGTTCGACC ATGCATAAAATACCTGACTAAATTCCCCCCCCCCCCTTACATGTCCGCGT CCTCGGCGCCGTTGGCGTCGTCGTCGGCTCGGCAGGGTCTCGCGGATGCC GTGGAACACCGCCACGGAAAGCAGCGCGTGCCGCTCCTCAAGGGCGGCGT CGGATCGTCGGTGTGCGTGAACGACATCAGCGCCGACGAGCTCAAGGGTG CCATAGCCGAGGCCTGGGCGATGCACGGCGATGCCGCGAAGCACCCCTCC GCCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1966:1040..2045+

>mRNA_L-elsbetiae_contig1966.5859.1 ID=mRNA_L-elsbetiae_contig1966.5859.1|Name=mRNA_L-elsbetiae_contig1966.5859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1966:1040..2045+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCGGCGGCGGACATCATGCACGGGGAGGCGGTGAACGTGGACGG
CTTCTTGTGCCTCGTGATCGCCAAGCGCCGCAGCATGATCCCGCAGCAGG
TGCTCGACAGGGTGTTCCGCGTGATGCAGAGCATTGGTCTACCCACCATC
CACGAGGGCATGGTGCCGGCGGCGGACATCATGCACGGGGAGGCGGTGAA
CGTGGACGGCTTCTTGTGCCTCGTGATCGCCAAGCGCCGCAGCATGATCC
CGCAGCAGGTGCTCGACAGGGTGTTCCGCGTGATGCAGAGCATTGGTCTA
CCCACCATCCACGAGGGCCTAGTAGTTCGACCATGCATAAAATACCTGAC
TAAATTCCCCCCCCCCCCTTACATGTCCGCGTCCTCGGCGCCGTTGGCGT
CGTCGTCGGCTCGGCAGGGTCTCGCGGATGCCGTGGAACACCGCCACGGA
AAGCAGCGCGTGCCGCTCCTCAAGGGCGGCGTCGGATCGTCGGTGTGCGT
GAACGACATCAGCGCCGACGAGCTCAAGGGTGCCATAGCCGAGGCCTGGG
CGATGCACGGCGATGCCGCGAAGCACCCCTCCGCCTAGCTAGTAGTTCGA
CCATGCATAAAATACCTGACTAAATTCCCCCCCCCCCCTTACATGTCCGC
GTCCTCGGCGCCGTTGGCGTCGTCGTCGGCTCGGCAGGGTCTCGCGGATG
CCGTGGAACACCGCCACGGAAAGCAGCGCGTGCCGCTCCTCAAGGGCGGC
GTCGGATCGTCGGTGTGCGTGAACGACATCAGCGCCGACGAGCTCAAGGG
TGCCATAGCCGAGGCCTGGGCGATGCACGGCGATGCCGCGAAGCACCCCT
CCGCCTAG
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