mRNA_L-elsbetiae_contig19657.5858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19657.5858.1
Unique NamemRNA_L-elsbetiae_contig19657.5858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19657.5858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19657contigL-elsbetiae_contig19657:1919..2541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19657.5858.1prot_L-elsbetiae_contig19657.5858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19657 1919..2539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.5375776-CDS-L-elsbetiae_contig19657:1918..21971622815814.5375776-CDS-L-elsbetiae_contig19657:1918..2197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19657 1919..2197 -
1691683120.2792435-CDS-L-elsbetiae_contig19657:1918..21971691683120.2792435-CDS-L-elsbetiae_contig19657:1918..2197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19657 1919..2197 -
1622815814.548125-CDS-L-elsbetiae_contig19657:2515..25391622815814.548125-CDS-L-elsbetiae_contig19657:2515..2539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19657 2516..2539 -
1691683120.2880833-CDS-L-elsbetiae_contig19657:2515..25391691683120.2880833-CDS-L-elsbetiae_contig19657:2515..2539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19657 2516..2539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.5611715-UTR-L-elsbetiae_contig19657:2539..25411622815814.5611715-UTR-L-elsbetiae_contig19657:2539..2541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19657 2540..2541 -
1691683120.2960756-UTR-L-elsbetiae_contig19657:2539..25411691683120.2960756-UTR-L-elsbetiae_contig19657:2539..2541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19657 2540..2541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19657.5858.1

>prot_L-elsbetiae_contig19657.5858.1 ID=prot_L-elsbetiae_contig19657.5858.1|Name=mRNA_L-elsbetiae_contig19657.5858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MWEGTVTQFLSSKSGRPSTCTSSSKVAGSGGSTAGGGRSTAGAFAAVAAA
AAARAKSPLAGGTRRARGGGVAATAATATPAAKARGGAAATATPATTATP
A
back to top

mRNA from alignment at L-elsbetiae_contig19657:1919..2541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19657.5858.1 ID=mRNA_L-elsbetiae_contig19657.5858.1|Name=mRNA_L-elsbetiae_contig19657.5858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=623bp|location=Sequence derived from alignment at L-elsbetiae_contig19657:1919..2541- (Laminarionema elsbetiae ELsaHSoW15)
GCATGTGGGAAGGGACGGTGACACAGGTGAGGCTAATCTCGTTCATTCAT
ACAGTACCCTACCTGGGCGTAAATACATCGGCATTGTTTTTTTGCCGGCC
ACGTAAAACCGGCCTCACTTTTCTGTGTAGGTTAGGTCTGGGATCTTAGT
CCAGAGGGAAAAACCTTAGTTCTACGTTCATCCCCCTTGCCTTGTCTCTT
GCGCATCCCCTCCCGGTGGGTTCGTCGTAACGGGAGCCTGACCCCCACCG
CCTATTCTTTCCCACCTGATCAGACCCACACCAAACCAAAACGAACGGCA
AAAGCTGACCAGACCAAACCACGCTAATCCCTTTCTCTCATCAGTTCCTG
TCGTCCAAGAGCGGGAGGCCCTCGACGTGCACTTCAAGCTCCAAGGTCGC
GGGGAGCGGCGGAAGCACCGCCGGAGGTGGCAGAAGCACCGCCGGGGCGT
TCGCGGCAGTAGCGGCGGCGGCGGCCGCGAGAGCGAAGTCCCCGCTCGCC
GGCGGGACCAGGAGAGCAAGGGGCGGCGGCGTCGCGGCCACCGCCGCCAC
CGCGACACCGGCTGCTAAAGCAAGGGGCGGTGCCGCCGCCACCGCGACAC
CGGCCACCACCGCAACCCCGGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19657:1919..2541-

>mRNA_L-elsbetiae_contig19657.5858.1 ID=mRNA_L-elsbetiae_contig19657.5858.1|Name=mRNA_L-elsbetiae_contig19657.5858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig19657:1919..2541- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGAAGGGACGGTGACACAGATGTGGGAAGGGACGGTGACACAGTT
CCTGTCGTCCAAGAGCGGGAGGCCCTCGACGTGCACTTCAAGCTCCAAGG
TCGCGGGGAGCGGCGGAAGCACCGCCGGAGGTGGCAGAAGCACCGCCGGG
GCGTTCGCGGCAGTAGCGGCGGCGGCGGCCGCGAGAGCGAAGTCCCCGCT
CGCCGGCGGGACCAGGAGAGCAAGGGGCGGCGGCGTCGCGGCCACCGCCG
CCACCGCGACACCGGCTGCTAAAGCAAGGGGCGGTGCCGCCGCCACCGCG
ACACCGGCCACCACCGCAACCCCGGCTTTCCTGTCGTCCAAGAGCGGGAG
GCCCTCGACGTGCACTTCAAGCTCCAAGGTCGCGGGGAGCGGCGGAAGCA
CCGCCGGAGGTGGCAGAAGCACCGCCGGGGCGTTCGCGGCAGTAGCGGCG
GCGGCGGCCGCGAGAGCGAAGTCCCCGCTCGCCGGCGGGACCAGGAGAGC
AAGGGGCGGCGGCGTCGCGGCCACCGCCGCCACCGCGACACCGGCTGCTA
AAGCAAGGGGCGGTGCCGCCGCCACCGCGACACCGGCCACCACCGCAACC
CCGGCT
back to top