mRNA_L-elsbetiae_contig19649.5857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19649.5857.1
Unique NamemRNA_L-elsbetiae_contig19649.5857.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19649.5857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19649contigL-elsbetiae_contig19649:390..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19649.5857.1prot_L-elsbetiae_contig19649.5857.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19649 554..868 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.4789128-UTR-L-elsbetiae_contig19649:389..5531622815814.4789128-UTR-L-elsbetiae_contig19649:389..553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19649 390..553 +
1691683120.2493272-UTR-L-elsbetiae_contig19649:389..5531691683120.2493272-UTR-L-elsbetiae_contig19649:389..553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19649 390..553 +
1622815814.5033386-UTR-L-elsbetiae_contig19649:868..8701622815814.5033386-UTR-L-elsbetiae_contig19649:868..870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19649 869..870 +
1691683120.2707057-UTR-L-elsbetiae_contig19649:868..8701691683120.2707057-UTR-L-elsbetiae_contig19649:868..870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19649 869..870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.489399-CDS-L-elsbetiae_contig19649:553..8681622815814.489399-CDS-L-elsbetiae_contig19649:553..868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19649 554..868 +
1691683120.259771-CDS-L-elsbetiae_contig19649:553..8681691683120.259771-CDS-L-elsbetiae_contig19649:553..868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19649 554..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19649.5857.1

>prot_L-elsbetiae_contig19649.5857.1 ID=prot_L-elsbetiae_contig19649.5857.1|Name=mRNA_L-elsbetiae_contig19649.5857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MTWLGRPVGRADSSSSSRETLSDFDDAGDRVTGGDPAFLTSAMTTRRPVD
AVCQRTRKQVDGVGGGPRRRVCRGVAATSSAPGGAPVGVDGALVPWAVQM
TKTR*
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mRNA from alignment at L-elsbetiae_contig19649:390..870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19649.5857.1 ID=mRNA_L-elsbetiae_contig19649.5857.1|Name=mRNA_L-elsbetiae_contig19649.5857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=481bp|location=Sequence derived from alignment at L-elsbetiae_contig19649:390..870+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCACCTGTGTCGCTTTGGTTGCTCTCCGACTCGTCGGACAGGCCCTGG
CTATCTCGAGCGCGTTGACGACGGAGTCGGCGGGCGCGGCTGCTCTCCTT
GGGGTCGTTTGTTTTCGCTTCGGCTCGTTGTTTGGCGCGGCTTCCCTGGC
ACTTTTGCGGTTGCATGACGTGGCTAGGTCGCCCGGTAGGCAGAGCCGAT
TCCAGTTCTTCTTCGAGGGAAACGCTGTCGGATTTTGACGACGCCGGAGA
CCGTGTGACCGGCGGTGATCCGGCTTTTTTGACGAGTGCGATGACGACGC
GGCGGCCCGTGGACGCCGTGTGTCAGAGGACGAGGAAGCAGGTGGATGGT
GTCGGCGGCGGCCCGCGTCGCCGTGTTTGCCGTGGCGTGGCGGCGACGAG
CAGCGCTCCTGGCGGCGCTCCCGTTGGTGTTGACGGCGCACTTGTTCCCT
GGGCAGTTCAAATGACGAAGACGAGGTGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19649:390..870+

>mRNA_L-elsbetiae_contig19649.5857.1 ID=mRNA_L-elsbetiae_contig19649.5857.1|Name=mRNA_L-elsbetiae_contig19649.5857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig19649:390..870+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTGGCTAGGTCGCCCGGTAGGCAGAGCCGATTCCAGTTCTTCTTC
GAGGGAAACGCTGTCGGATTTTGACGACGCCGGAGACCGTGTGACCGGCG
GTGATCCGGCTTTTTTGACGAGTGCGATGACGACGCGGCGGCCCGTGGAC
GCCGTGTGTCAGAGGACGAGGAAGCAGGTGGATGGTGTCGGCGGCGGCCC
GCGTCGCCGTGTTTGCCGTGGCGTGGCGGCGACGAGCAGCGCTCCTGGCG
GCGCTCCCGTTGGTGTTGACGGCGCACTTGTTCCCTGGGCAGTTCAAATG
ACGAAGACGAGGTGAATGACGTGGCTAGGTCGCCCGGTAGGCAGAGCCGA
TTCCAGTTCTTCTTCGAGGGAAACGCTGTCGGATTTTGACGACGCCGGAG
ACCGTGTGACCGGCGGTGATCCGGCTTTTTTGACGAGTGCGATGACGACG
CGGCGGCCCGTGGACGCCGTGTGTCAGAGGACGAGGAAGCAGGTGGATGG
TGTCGGCGGCGGCCCGCGTCGCCGTGTTTGCCGTGGCGTGGCGGCGACGA
GCAGCGCTCCTGGCGGCGCTCCCGTTGGTGTTGACGGCGCACTTGTTCCC
TGGGCAGTTCAAATGACGAAGACGAGGTGA
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