mRNA_L-elsbetiae_contig19648.5856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19648.5856.1
Unique NamemRNA_L-elsbetiae_contig19648.5856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 8.970e-28
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGTKVLMQELFRAVLKHWRSTNSGKEDCAKFFVDRGG 193
            MLD M  D+L+ALYRL +GKKGPGMSRYGTK LMQELFR V KHWR+TN GKEDCAKFFVDRGG
Sbjct:  339 MLDSMKMDDLEALYRLCFGKKGPGMSRYGTKALMQELFRDVAKHWRTTNFGKEDCAKFFVDRGG 402
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5JSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.440e-25
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGTKVLMQELFRAVLKHWRSTNSGKEDCAKFFVDRGG 193
            ML+GMTKD+LDALY L +GK GPGMSRY TK LMQ+LF+ V +HW  TN GKEDCAKFFVDRGG
Sbjct:  609 MLEGMTKDDLDALYCLCFGKNGPGMSRYSTKALMQKLFKDVAEHWGKTNFGKEDCAKFFVDRGG 672
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5JJM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM9_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.510e-25
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGTKVLMQELFRAVLKHWRSTNSGKEDCAKFFVDRGG 193
            ML+GMTKD+LDALY L +GK GPGMSRY TK LMQ+LF+ V +HW  TN GKEDCAKFFVDRGG
Sbjct:  796 MLEGMTKDDLDALYCLCFGKNGPGMSRYSTKALMQKLFKDVAEHWGKTNFGKEDCAKFFVDRGG 859
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.530e-15
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGTKVLMQELFRAVLKHWRSTNSGKEDCAKFFVDRG 190
            ML+G + D L  LYRL +G + PG+SRY  +VL+ ELF+ V K WR +N GKEDC+KFF++RG
Sbjct:  338 MLEGTSLDGLMDLYRLCFGPRAPGISRYPNRVLLIELFKTVEKLWRESNHGKEDCSKFFMERG 400
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.540e-14
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGTKVLMQELFRAVLKHWRSTNSGKEDCAKFFVDRG 190
            ML+GM+ D L  LYRL +G + PG SRY  +VL+ +LF+ V K WR +N GKEDC+ FF++RG
Sbjct:    1 MLEGMSLDGLKDLYRLCFGPRAPGNSRYPNRVLLIDLFKTVEKLWRESNHGKEDCSTFFMERG 63
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5JPN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.130e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGTKVLMQELFRAVLKHWRSTNSGKEDCA 169
            ML+GM+ D L  LYRL +G + PG SRY  +VL+ ELF+ V K WR +N GKEDC+
Sbjct:  187 MLEGMSLDGLKDLYRLCFGPRAPGNSRYPNRVLLIELFKTVEKLWRESNHGKEDCS 242
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5KMZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMZ3_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.080e-5
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:  184 QGGVLVSSGVEGGYTPDGIMLCHMFMLR 267
            +G  LVSSGVEGGY+PDG+  CHMFMLR
Sbjct:    3 RGAWLVSSGVEGGYSPDGVQTCHMFMLR 30
[Close]
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Match: A0A6H5JRG8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG8_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.810e-5
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:    2 MLDGMTKDELDALYRLIYGKKGPGMSRYGT 91
            ML+GMTKD+LDALY L +GK GPGMSR  T
Sbjct:  532 MLEGMTKDDLDALYCLCFGKNGPGMSRSNT 561
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19648.5856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KKU6_9PHAE8.970e-2881.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ5_9PHAE4.440e-2575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM9_9PHAE4.510e-2575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1E3_9PHAE4.530e-1555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ9_9PHAE1.540e-1453.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPN7_9PHAE1.130e-1155.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMZ3_9PHAE8.080e-575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG8_9PHAE8.810e-573.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19648contigL-elsbetiae_contig19648:3..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.4348085-CDS-L-elsbetiae_contig19648:2..831622815814.4348085-CDS-L-elsbetiae_contig19648:2..83Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19648 3..83 +
1691683120.2320716-CDS-L-elsbetiae_contig19648:2..831691683120.2320716-CDS-L-elsbetiae_contig19648:2..83Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19648 3..83 +
1622815814.446435-CDS-L-elsbetiae_contig19648:391..5771622815814.446435-CDS-L-elsbetiae_contig19648:391..577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19648 392..577 +
1691683120.24135-CDS-L-elsbetiae_contig19648:391..5771691683120.24135-CDS-L-elsbetiae_contig19648:391..577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19648 392..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19648.5856.1prot_L-elsbetiae_contig19648.5856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19648 3..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19648.5856.1

>prot_L-elsbetiae_contig19648.5856.1 ID=prot_L-elsbetiae_contig19648.5856.1|Name=mRNA_L-elsbetiae_contig19648.5856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
DAGRHDQGRARRVISLDLWEEGAGNEQIRHEGADAGAVPGCVEALAEHKF
RKGGLCQVLRGQGGVLVSSGVEGGYTPDGIMLCHMFMLR
back to top

mRNA from alignment at L-elsbetiae_contig19648:3..579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19648.5856.1 ID=mRNA_L-elsbetiae_contig19648.5856.1|Name=mRNA_L-elsbetiae_contig19648.5856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=577bp|location=Sequence derived from alignment at L-elsbetiae_contig19648:3..579+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCTGGACGGCATGACCAAGGACGAGCTAGACGCGTTATATCGCTTGA
TCTATGGGAAGAAGGGGCCGGGAATGAGCAGGTGAGTCGATGTGTATAGA
CATGACCTTTTGCTGCTCCTCGAAATATTCACGGAGTATGGTTTGTTTCT
CCTTTGTTTTCGGGTATATTGCGGTCAAATTGCCGGAGATGGCGGTTGAT
TCAGAACCGAAAATATTTGTGGAAATTTGGCAAGAAGATAGCTCAACTTT
AAAGATGCAGCGATGTAGAAGAAACGGGGGCTTTTTTCCGGGCCTCGCAG
ATAGGATACTGGTCGTACCCGTGTCCCGTGGAATCAGGTTTGTTTCCTGT
CTGTCTCGTGTGTGCTGCCCTGCCCCCCGCTTCTTGCAGATACGGCACGA
AGGTGCTGATGCAGGAGCTGTTCCGGGCTGTGTTGAAGCATTGGCGGAGC
ACAAATTCCGGAAAGGAGGACTGTGCCAAGTTCTTCGTGGACAGGGGGGG
GTGTTGGTGTCGTCTGGTGTCGAGGGCGGATATACACCAGACGGGATCAT
GTTGTGCCACATGTTCATGCTACGCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19648:3..579+

>mRNA_L-elsbetiae_contig19648.5856.1 ID=mRNA_L-elsbetiae_contig19648.5856.1|Name=mRNA_L-elsbetiae_contig19648.5856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig19648:3..579+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCTGGACGGCATGACCAAGGACGAGCTAGACGCGTTATATCGCTTGA
TCTATGGGAAGAAGGGGCCGGGAATGAGCAGGATGCTGGACGGCATGACC
AAGGACGAGCTAGACGCGTTATATCGCTTGATCTATGGGAAGAAGGGGCC
GGGAATGAGCAGATACGGCACGAAGGTGCTGATGCAGGAGCTGTTCCGGG
CTGTGTTGAAGCATTGGCGGAGCACAAATTCCGGAAAGGAGGACTGTGCC
AAGTTCTTCGTGGACAGGGGGGGGTGTTGGTGTCGTCTGGTGTCGAGGGC
GGATATACACCAGACGGGATCATGTTGTGCCACATGTTCATGCTACGCAT
ACGGCACGAAGGTGCTGATGCAGGAGCTGTTCCGGGCTGTGTTGAAGCAT
TGGCGGAGCACAAATTCCGGAAAGGAGGACTGTGCCAAGTTCTTCGTGGA
CAGGGGGGGGTGTTGGTGTCGTCTGGTGTCGAGGGCGGATATACACCAGA
CGGGATCATGTTGTGCCACATGTTCATGCTACGC
back to top