mRNA_L-elsbetiae_contig19647.5855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19647.5855.1
Unique NamemRNA_L-elsbetiae_contig19647.5855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19647.5855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19647contigL-elsbetiae_contig19647:376..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.38883-CDS-L-elsbetiae_contig19647:375..7081622815814.38883-CDS-L-elsbetiae_contig19647:375..708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19647 376..708 +
1691683120.2075489-CDS-L-elsbetiae_contig19647:375..7081691683120.2075489-CDS-L-elsbetiae_contig19647:375..708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19647 376..708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.39883-UTR-L-elsbetiae_contig19647:708..7541622815814.39883-UTR-L-elsbetiae_contig19647:708..754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19647 709..754 +
1691683120.2209525-UTR-L-elsbetiae_contig19647:708..7541691683120.2209525-UTR-L-elsbetiae_contig19647:708..754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19647 709..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19647.5855.1prot_L-elsbetiae_contig19647.5855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19647 376..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19647.5855.1

>prot_L-elsbetiae_contig19647.5855.1 ID=prot_L-elsbetiae_contig19647.5855.1|Name=mRNA_L-elsbetiae_contig19647.5855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
VLPALNRASWWSPCGSPCVKKNTFQTVTAAGLLHRLLQRETSVHCAYCPK
QQTNDFLFSGGGCFGAITNRQQTATELALSASGYGLGGTIITDRAHFRAL
ITLQGVVRRF*
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mRNA from alignment at L-elsbetiae_contig19647:376..754+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19647.5855.1 ID=mRNA_L-elsbetiae_contig19647.5855.1|Name=mRNA_L-elsbetiae_contig19647.5855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig19647:376..754+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGCCGGCACTTAATCGCGCCAGCTGGTGGTCCCCCTGTGGGTCCCC
CTGCGTAAAAAAAAACACTTTTCAAACTGTGACAGCTGCCGGGCTGTTGC
ACAGGCTGTTGCAAAGAGAGACGTCAGTGCACTGTGCATATTGCCCCAAA
CAACAAACCAATGATTTTTTATTCAGCGGGGGGGGTTGTTTTGGAGCCAT
AACAAATCGACAACAGACAGCAACAGAACTTGCTCTTTCTGCGAGCGGCT
ATGGCCTCGGGGGAACCATAATCACTGATCGTGCTCATTTTCGTGCCTTG
ATAACTCTCCAGGGCGTGGTGCGCCGTTTCTGATAAAACTAGCAAAATAC
CAGTGTTTTTATGCCTTTTTCGATCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19647:376..754+

>mRNA_L-elsbetiae_contig19647.5855.1 ID=mRNA_L-elsbetiae_contig19647.5855.1|Name=mRNA_L-elsbetiae_contig19647.5855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig19647:376..754+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGCCGGCACTTAATCGCGCCAGCTGGTGGTCCCCCTGTGGGTCCCC
CTGCGTAAAAAAAAACACTTTTCAAACTGTGACAGCTGCCGGGCTGTTGC
ACAGGCTGTTGCAAAGAGAGACGTCAGTGCACTGTGCATATTGCCCCAAA
CAACAAACCAATGATTTTTTATTCAGCGGGGGGGGTTGTTTTGGAGCCAT
AACAAATCGACAACAGACAGCAACAGAACTTGCTCTTTCTGCGAGCGGCT
ATGGCCTCGGGGGAACCATAATCACTGATCGTGCTCATTTTCGTGCCTTG
ATAACTCTCCAGGGCGTGGTGCGCCGTTTCTGAGTGCTGCCGGCACTTAA
TCGCGCCAGCTGGTGGTCCCCCTGTGGGTCCCCCTGCGTAAAAAAAAACA
CTTTTCAAACTGTGACAGCTGCCGGGCTGTTGCACAGGCTGTTGCAAAGA
GAGACGTCAGTGCACTGTGCATATTGCCCCAAACAACAAACCAATGATTT
TTTATTCAGCGGGGGGGGTTGTTTTGGAGCCATAACAAATCGACAACAGA
CAGCAACAGAACTTGCTCTTTCTGCGAGCGGCTATGGCCTCGGGGGAACC
ATAATCACTGATCGTGCTCATTTTCGTGCCTTGATAACTCTCCAGGGCGT
GGTGCGCCGTTTCTGA
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