mRNA_L-elsbetiae_contig19616.5848.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19616.5848.1
Unique NamemRNA_L-elsbetiae_contig19616.5848.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: D7G1K9_ECTSI (Catalase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K9_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.680e-31
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAGAL 197
            FPNSFSGPAAA+ +HAGWHA++A+GDVARYPTGDDDNF+QAGEFFRRTLDEGGRQRLTDNIAGAL
Sbjct:  402 FPNSFSGPAAADPSHAGWHAERATGDVARYPTGDDDNFTQAGEFFRRTLDEGGRQRLTDNIAGAL 466          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A7S2UIK2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIK2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.700e-17
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAG 191
            FPNSF GP   + A   WH++ ASGDV R+ TGD+DNFSQ G+FFR+ LD+G R+RLTDNIAG
Sbjct:  286 FPNSFQGPEP-DQASGTWHSEVASGDVLRHETGDEDNFSQCGQFFRQVLDDGARERLTDNIAG 347          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A7S1DAZ8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAZ8_CYCTE)

HSP 1 Score: 80.5 bits (197), Expect = 3.080e-16
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIA 188
            FPNSF+GP  +      WH+D  +GDV R  TGD+DNFSQ GEFFR  LDEGGR+RLTDNIA
Sbjct:  272 FPNSFNGPITSPVGT--WHSDSVTGDVVRIETGDEDNFSQCGEFFRNVLDEGGRERLTDNIA 331          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: W7T2K9_9STRA (Catalase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2K9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.630e-16
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAGALV 200
            FPNSFSGPA  E A    H D   GDVARY T DDDNF+QAG F+R  LDEG R RLT NIAG LV
Sbjct:  404 FPNSFSGPA--EDASQALHRDVGVGDVARYNTADDDNFTQAGCFYREVLDEGARDRLTSNIAGHLV 467          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A482T0M3_9ARCH (Catalase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0M3_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.320e-15
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAGALV 200
            FPNSFSGP     A   WHADKASGDV R  TG +DNF+QAG FFR+ L  G +QRL DNIAG LV
Sbjct:  404 FPNSFSGPQPVPTAK--WHADKASGDVQRMETGGEDNFTQAGIFFRKVLCAGAKQRLVDNIAGNLV 467          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A7R9UAR8_9STRA (Catalase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAR8_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.610e-15
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAGALV 200
            FPNSFSGPA        WHA KA+GDV RY  GD+DNFSQ GEF+R  L+   R RLT NIAG LV
Sbjct:  402 FPNSFSGPAVMRE--EAWHAPKATGDVMRYEAGDEDNFSQCGEFYRSVLNAEERDRLTSNIAGHLV 465          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A7R9YDT7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDT7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.650e-15
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAGALV 200
            FPNSFSGPA        WHA KA+GDV RY  GD+DNFSQ GEF+R  L+   R RLT NIAG LV
Sbjct:  452 FPNSFSGPAVMRE--EAWHAPKATGDVMRYEAGDEDNFSQCGEFYRSVLNAEERDRLTSNIAGHLV 515          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A7S2UH30_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH30_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.230e-14
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 3
Query:   54 WHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAG 191
            WH++ AS DV R+ TGD+DNFSQ G+FFR+ LD+G R+RLTDNIAG
Sbjct:    1 WHSEVASADVLRHETGDEDNFSQCGQFFRQVLDDGARERLTDNIAG 46          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A662YAE1_9STRA (Catalase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAE1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.650e-14
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 FPNSFSGPAAAE----HAHAGWHADKASGDVARYPTGDDDNFSQAGEFFRRTLDEGGRQRLTDNIAGALV 200
            FPNS  GPA AE    HA+ G HA      V ++ T DDDNFSQ GEF+R+TLD+  R+RLTDNIAG+LV
Sbjct:  389 FPNSMGGPAEAEGMRYHAYQGEHAL-----VDKFSTADDDNFSQVGEFYRKTLDDAARERLTDNIAGSLV 453          
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Match: A0A6H5K8H8_9PHAE (Catalase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.740e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:    3 FPNSFSGPAAAEHAHAGWHADKASGDVARYPTGDDDNFSQ 122
            FPNSFSGPAAA+ +HAGWHA++A+GDVARYPTGDDDNF+Q
Sbjct:  301 FPNSFSGPAAADPSHAGWHAERATGDVARYPTGDDDNFTQ 340          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19616.5848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1K9_ECTSI3.680e-3189.23Catalase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A7S2UIK2_9STRA6.700e-1763.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1DAZ8_CYCTE3.080e-1664.52Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7T2K9_9STRA9.630e-1666.67Catalase n=2 Tax=Monodopsidaceae TaxID=425072 RepI... [more]
A0A482T0M3_9ARCH1.320e-1565.15Catalase n=1 Tax=archaeon TaxID=1906665 RepID=A0A4... [more]
A0A7R9UAR8_9STRA4.610e-1562.12Catalase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=... [more]
A0A7R9YDT7_9STRA4.650e-1562.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2UH30_9STRA3.230e-1467.39Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A662YAE1_9STRA7.650e-1458.57Catalase n=2 Tax=Nothophytophthora sp. Chile5 TaxI... [more]
A0A6H5K8H8_9PHAE7.740e-1482.50Catalase domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19616contigL-elsbetiae_contig19616:252..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.9446735-CDS-L-elsbetiae_contig19616:251..3301622815813.9446735-CDS-L-elsbetiae_contig19616:251..330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19616 252..330 -
1691683119.9695003-CDS-L-elsbetiae_contig19616:251..3301691683119.9695003-CDS-L-elsbetiae_contig19616:251..330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19616 252..330 -
1622815813.9585445-CDS-L-elsbetiae_contig19616:479..6011622815813.9585445-CDS-L-elsbetiae_contig19616:479..601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19616 480..601 -
1691683119.9815347-CDS-L-elsbetiae_contig19616:479..6011691683119.9815347-CDS-L-elsbetiae_contig19616:479..601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19616 480..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19616.5848.1prot_L-elsbetiae_contig19616.5848.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19616 252..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19616.5848.1

>prot_L-elsbetiae_contig19616.5848.1 ID=prot_L-elsbetiae_contig19616.5848.1|Name=mRNA_L-elsbetiae_contig19616.5848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
TSPTASRGPLLPNTRTPGGTLTRPAGMWRATRRATTTTSRRRESSSGAPW
TKAGGRGLPTISLAPW*
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mRNA from alignment at L-elsbetiae_contig19616:252..601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19616.5848.1 ID=mRNA_L-elsbetiae_contig19616.5848.1|Name=mRNA_L-elsbetiae_contig19616.5848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=350bp|location=Sequence derived from alignment at L-elsbetiae_contig19616:252..601- (Laminarionema elsbetiae ELsaHSoW15)
ACTTCCCCAACAGCTTCTCGGGGCCCGCTGCTGCCGAACACGCGCACGCC GGGTGGCACGCTGACAAGGCCAGCGGGGATGTGGCGCGCTACCCGACGGG CGACGACGACAACTTCTCGCAGGTCTGTCCCTGTGCCCGTATGGACTGTC GTTGTCCTGTGGTGTTTTTTGATGTCCGATTTGTGTGTGTGTTTTCTTCC TTTGAAGGCTTCACTTACCTTCACTTTATCTCTCTTGTTTGTCGCCTTAA TCTTGTTCTGCTTATTTTCAGGCGGGAGAGTTCTTCCGGCGCACCTTGGA CGAAGGCGGGCGGCAGAGGCTTACCGACAATATCGCTGGCGCCTTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19616:252..601-

>mRNA_L-elsbetiae_contig19616.5848.1 ID=mRNA_L-elsbetiae_contig19616.5848.1|Name=mRNA_L-elsbetiae_contig19616.5848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig19616:252..601- (Laminarionema elsbetiae ELsaHSoW15)
ACTTCCCCAACAGCTTCTCGGGGCCCGCTGCTGCCGAACACGCGCACGCC
GGGTGGCACGCTGACAAGGCCAGCGGGGATGTGGCGCGCTACCCGACGGG
CGACGACGACAACTTCTCGCAGACTTCCCCAACAGCTTCTCGGGGCCCGC
TGCTGCCGAACACGCGCACGCCGGGTGGCACGCTGACAAGGCCAGCGGGG
ATGTGGCGCGCTACCCGACGGGCGACGACGACAACTTCTCGCAGGCGGGA
GAGTTCTTCCGGCGCACCTTGGACGAAGGCGGGCGGCAGAGGCTTACCGA
CAATATCGCTGGCGCCTTGGTGAGCGGGAGAGTTCTTCCGGCGCACCTTG
GACGAAGGCGGGCGGCAGAGGCTTACCGACAATATCGCTGGCGCCTTGGT
GA
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