mRNA_L-elsbetiae_contig1961.5845.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1961.5845.1
Unique NamemRNA_L-elsbetiae_contig1961.5845.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1961.5845.1 vs. uniprot
Match: D8LDB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB6_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.020e-17
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   76 PSYGTILREVSIILRAAEDGNKLTFRQLRLAVEKSLGLPEDSLHKGKHKASIKKAAHSVMNDLDREAA 279
            PS GT+ RE+S  LRAA D N LTF+Q+RLAVE+SLGLPE SLHKG  K+ IK+A HSVM+D++ + A
Sbjct:   11 PSAGTLRREISTFLRAAADPNALTFKQVRLAVEESLGLPEGSLHKG-FKSQIKEAVHSVMDDIEADRA 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1961.5845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDB6_ECTSI5.020e-1763.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1961contigL-elsbetiae_contig1961:2877..8933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D8LDB6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of transcription initiation from RNA polymerase II promoter
EggNOG OGsKOG2712@1,KOG2712@2759
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-25_001840.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size370
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1961.5845.1prot_L-elsbetiae_contig1961.5845.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1961 2877..8933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.7506247-CDS-L-elsbetiae_contig1961:2876..30321622815813.7506247-CDS-L-elsbetiae_contig1961:2876..3032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 2877..3032 +
1691683119.8401623-CDS-L-elsbetiae_contig1961:2876..30321691683119.8401623-CDS-L-elsbetiae_contig1961:2876..3032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 2877..3032 +
1622815813.7635834-CDS-L-elsbetiae_contig1961:7044..71431622815813.7635834-CDS-L-elsbetiae_contig1961:7044..7143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 7045..7143 +
1691683119.856859-CDS-L-elsbetiae_contig1961:7044..71431691683119.856859-CDS-L-elsbetiae_contig1961:7044..7143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 7045..7143 +
1622815813.776276-CDS-L-elsbetiae_contig1961:8819..89331622815813.776276-CDS-L-elsbetiae_contig1961:8819..8933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 8820..8933 +
1691683119.867045-CDS-L-elsbetiae_contig1961:8819..89331691683119.867045-CDS-L-elsbetiae_contig1961:8819..8933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 8820..8933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1961.5845.1

>prot_L-elsbetiae_contig1961.5845.1 ID=prot_L-elsbetiae_contig1961.5845.1|Name=mRNA_L-elsbetiae_contig1961.5845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
SLARQPAILSCDCCEWPMASPESDGPSYGTILREVSIILRAAEDGNKLTF
RQLRLAVEKSLGLPEDSLHKGKHKASIKKAAHSVMNDLDREAAAEEEEGE
QKQVKRENEESEEEEERRRDRIR
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mRNA from alignment at L-elsbetiae_contig1961:2877..8933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1961.5845.1 ID=mRNA_L-elsbetiae_contig1961.5845.1|Name=mRNA_L-elsbetiae_contig1961.5845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6057bp|location=Sequence derived from alignment at L-elsbetiae_contig1961:2877..8933+ (Laminarionema elsbetiae ELsaHSoW15)
TCATTGGCCAGGCAACCTGCAATACTGAGCTGTGACTGTTGCGAGTGGCC
GATGGCATCACCAGAGAGCGATGGGCCGTCATACGGTACTATTCTGCGGG
AAGTCTCCATCATTCTGCGAGCCGCCGAAGACGGCAACAAGCTAACCTTC
AGACAGGTGGATAACGTCGTTCCTTGTCCTGCTCAGCCGGCCGGAGTGCA
GTATACAGTATACCCTCCTGCGCTGCTGTTTTTAGCCACAATTTTCCCGG
CCATCTCTACAGCGGTAGCACAGCAGTGTTGTCCATTGTTACACGTTCGC
ACTCGATAGACCTGCCCGGGAATCTGGGGTGTAATCCTGACGTTTTTGGG
CACTATTTCGGACACTTGACTAGATATTTTTCTGTTTTCGGGGAAGTCGG
TATCTAATCCGCGATTACATTGCCGAGCGTTACACATATCTATCCACGCG
GCCAAGTGTGCGTGGTATTTGCAGATGAGGGGTTAAATAGACATCGGTGA
ATCAAAACCCTCATTCATGTGCGTAGTACGTCGAACTCCACTTCCTCACT
GTTTTGGCAAAATTTGAAGGATCTTGGGCGGACGGTAACTATCTATTTTG
ATGACTTAGCTACGTACATTCTGGACACGGCTTTGCTTACAGCTTGGTTT
TACAGCAGTCCTAGCTTCAGCTAACGCGATACATCTTGCAACTTGCAGCA
TCCAGCGAATCATCAAAATTTTGAACGCATCAACGCATTTTGCGCTTCCA
GGATCGGGTTGTGTCGGAGGGAGAGTAGACGCTAAATTACATATACAATA
CAAGGGCTCCGGACGCGGGGGCCTACCGCCCCCCCCGTCCTTCGATTTCT
GATAGTTAATAGGGAGGGTTCGATGATATGTGGTTACCCAGCGGGTTACC
AAGGGTACTACTGTTGGTGAGAGGAACAGGAACTGAGCGTGCGTGTAGTA
GTAACTTTCTTTGTTGAGGCGGAAAAAAAGTCGTCGCGCAATTGGCCGCC
AATATAGTTTTTGAAGCCATCCTCTTGCATGAAATCGATCGTAGAAAAAA
CACTGTTGTCACCCGAAAGAAGACTTGATTTGGGCTGATGTGGTCCATGA
GAAAAAATCTAGCAACTCACGGCCCGTGGTGAAACAGTGCTCGAGCCATC
AAAATGTCCTAAAGAAACCCACACCGGAAATGAACGGTACACAACAGGGA
GGGTGCGATGATGCGTTAGTTACAGTATATCTATGTATGACGAAGACGAA
CTGAGCGTGCGTGTAGTGGGATTTCCCGGGAAAGTCCATTTCATTTCTTT
TCATTCAGTATCCAGTCTATACCCGCCTTTTTTAGGCTAAGTTATCCTGT
GACCACGGGAATCGATTGCGTCAGTGTTGGATTAGTACGGACTCATGGAG
GTGTGCTAGATAGAGAGATCAAAACGGTTTTGAGTGTGAAGGTAACACAC
ACACGCACTACTACTGACTGTACATTCAATATAGAGCAGCGGCGGGTATT
AACAACCACCCGGGTATTAACAACCAAGTAGCTTGCAACACTCATATCTT
GCCAACAAACTTAAGAACTGCCTTTCTTTTTTGTTTCCTTGTTGCCATGG
ATCTTGCCGATCATTCAAGCCCGAGTTTGGTCCATTTGGATACAAACTTG
GCCCTCTACAGCATTCGGCGCCAGGGTGATGTACGATATCTCTGTCTTTT
TTTTTTTCCGGTGGCCGCCGCTAAGGAATCGGGCAAATATTAGTTCATAA
GACCCACAATTTTACCAATGTTACCTCTATTTTTAGCCCAGTGGTGTAGT
ATGAGTTCGCGGGTGTTGCGAACTTGACCTCGAGCTTCGGCGATGGTCAA
CCTTTTATTTTTCTCACTTTTTCGCTCTTTTTTTTTCGTTTTTTCTCTCG
ATTTTCGCCAAAATCTGCGCAAAACGCCTTCTGGATGCGGTATTGAGACC
AAATCAACTCCGATTGCATTGAAAATTTATACACCGTCTATTCTAGAGGT
ATGCAACAGGGTCCTGAAGAAAAAACGAGAAAAAAACAATTTTCAACCTA
CCAGTGTTTCGCCCAAAGTAGGCCTTTTTTTGCCTTTTTTGCCCTAAAAA
CAGCCCGAAAAAACACGGGGATTCTGGGTTTTTGTCCCCAGATATGCATG
GATTTTGTTTTTTGTTTTTTTAAACGCTTTCGATTAGCATTATTACTGTG
TGGTCCAAAGGAAAAGTTATGGGAAGCAGTAGAATGTGCGCAATCACTAT
TAATGGCAAGTGGTTGTTAATACCCCCCGGGCCGTTTTACCCTCAAAACT
CCAAGTTCAACTTGGGCAAACGGAAACAGCTGTGCCTCGTCACTAACGAC
GTTTTTGTTTTGTTTTGTTTTTTGGACAGATCGGTGGTGATGTTAGCTAT
CGTTCGATACCTAAATATCTTCGTAGTTGGTTTTGCTCTCCAAGAACGAG
CTTTTGGCGCGGGAGTGGCTTAGGTGGTTGTTAATACCCGCCGCTACTCT
AGATATAAGCTAATGTTCCTATCTGAGAACAACGCGGATTATCTTTTTGT
TCAGCGGTGACGGATAGAGAGCGGAACGTATGACCACCAAAACAAATGAG
ACATGACACAACAACAGCCATCTTCGCGTAACATGGTAAACCAAAGACTT
TTACCATCACTGAGAGTCAGAGGTGCTCATGATGCAAACCGCAGCCCCAA
TGATGCGCTGACACGCACGTTGTTAACTGCAACGGCCGGATGGATGCAAA
CTCCTACAATTTCGGATATATATATATCTATGTCGCCACCGGGACGCTGT
GAACCCTAGCTTTTTCGTATTCGGGTCCTCTACGCATGAACTCTCTGACA
CATTCGGTGCTGACACATTCGGTGCTGTGGCGGTGTGGCGCCTCTGAAAG
CCCAAGGGTTGCTCTTTGGGGCGTGTTCTTCCAGCTGAGTAGAAGCGCTT
ATTCTGCATGCAGACCACACTGGCAACGGCGAAAAAAAGCGCCGACAAAC
CGACAAACTAAACAGTCGCGCGCAAGATGTTGTTTCTAAGCATATCCTAT
ACGCGGTGGTCCTGTAAATAGCTCGTCGGCTCACGCGTCGAGTCCCATGT
GCTAGCACCCTGCCTGTGCAGATTCTGCGGCATATTGTTTATGAGGACGC
GTGTGGTATTTTTCAACACGCCCACACCACACACCCGAATGCTTGGAAGT
GCCGAGTTGCGGACCAACAGCTTGCTGTGTAGTCACAACTTTTTGCTGCT
GGTTGTTGCAGAGTAAAATACACTTTTGAGACGTTGCTCGGCGTTACTCG
CCTGGCCCGAACGCGTTTAGACTCGATCCCGCGGCAACGGGTCCGTGTTG
GAAAGACATTTGTCGCTGATTTCGTGCAAGGAGGGACCGGGCGATGCTGG
CGTGTGGTCGCTGACGGAGGCAACGCTTAACGTACTGCTTTCAGGGGGGA
TCGAACTGCGCCGCTGCTCTGTCAGCGACCCAGGTTTCAAAATGTTGAGC
CTGTTATTAATAACAGGGGAGATATCACTATGCAAATGCCCAGGATAGAA
ACAAACCACTCGGTTACAACGCCACTGTGTGTACCCTCACAAAAGGTATA
CGACTGGAGTTAGAGACAACACAAAAAAAAAACTCCAAAATATCGTGATA
TTAGTTACCTCTCTATGTGTTCGCGTGTAAAAAAAAAGGTAAAAGAAAAG
CCTCAACGAAACAAAAGTTGTCTGCTGGATTCCCCCCCGAGGGTGAACGA
TTCCCTCTCAAAGAACCCCCTCCTTCGGGGTTGTCTTAAGGGTGAAATGG
AATGCTTAGTATATACCCTGGACTCAGTGTTAGCCAGCGGTAATATTGTA
GCCCTGGGATACAACAACGTTTTGTGCCTATTTGTGTGCATATTCTTGCC
CGATTTGAGGCACAGAGTGGAGGGCACGGCAGGAGGAAAGGGGTACGCAC
AGAAGATAGTTGAAGGTATCATGTTCTCTGTTGATTTTTTTTACATCATG
TCTGCGGAGCAGACCGATTCCAAATCGTCCCTGACTCTGCTTCAATCGAG
GCGGTCGGGCCCGGCCGGCATCATCATCAGTGATCATCATTCGACCGCAC
GCCCCCACCCGCCCACCCAATCCACCCCTCCTTTGTAATAATGCCGATTC
GGGTGTTAAAAACCTCAGCTTCGTCTGGCGGTGGAGAAATCCCTGGGGCT
GCCGGAGGACTCGCTGCACAAGGGGAAGCACAAGGCGAGCATCAAGAAGG
CCGCGCATTCCGTCATGGTATGTATGTGGGCCGATCCAGAAGGCAGCGGC
TCTATGTACCGGCAGGAGCTTTTTTTTTTTTTCTTACGATAAATACTAAA
ATAAAAATACACAACTACCCACACGTTTACCAGGAGTATTTTTTTTTTTT
TTTCACGCCCACCCTCGGGTTTAGTTTTGGGCAACGGCCAAAACAAGGTA
CACCTTGTACTTTTCCGGCCAAAACAAGGTATTGTATGTGGTACGGAACA
TCAACGTGCCTCGCATCTACTAAAGCCCTCGGATAGAATCTCAGAGGCTG
TCCCATGGCCGCCATCAAAGTAGGGCACGACCCGTGCACAGCGTCAATGG
ATGTCTACATACTATCTACATACACATGCTCGAGGGTGGGGTAGACGCTC
CGCCGTGCAACTACGCACGGCTGCAATGACCCTCGTTTGGACAACAGTAG
TGTGACGGCGGGGCTACCCAGTTGGCTTATTGGGGTAGGGTAAGTAGCGC
ATTTGGTTTAGATCCGGCATGATGAGAAAATGTAAGCAGGAATGACACTT
TTCTCGTGGGTCAGTATAGGGCACTAGGGCTCTGGTCCCCGACGAAGAAC
CCCGCAGTTTCCGGCCAAAAGAGGGTGAACGAGCGGCAAAACAAGGAGTA
GCTGGAAGCTGAGTAGCCACGCGAAGGTGTACCGTATACTTTTCGGCCAA
AAGAAGGTGCTTGGTAGGAATTTTCACTTGAACCCAAAGTAGGACACCTT
GTTTTGGTCGGAAAAGTACAAGGTGTACCTTGTTTTGGCCGCTGCCCTTT
ATTTTTTGTCCCTGTCTGCACCACACCGACAGCGCGCAACAAAAACTAAA
AACTATTTAGCGCGCCTGTGCTTGCCTCTGCATGCGTACCTACATCTCGC
CTGCGTGCCTGCTTATTTATATGCTTCGAAGTATTTACCCTTTTTTGGTC
AGTGTGGAGAACTTCCCTCACAGGAAAACGCTTCCTCCCCTGGGGGGGGG
TGCATGGTGTATCTCTGCCGCACGTAACCGATCTGACTTTTGGGAGAATG
AGAGAGAGCGGGAGGGGGGGAGGGACGCTCCTTTCCCTCTCTTCGGAGTG
AATGCCAACGATACACACGCACGCTGGTGGATAGAATAAATACAACCAGC
CATCACACATATGCTTTTGCAGGCATGCCAAACTCCCCTTTTTTTCGAGA
CTGAGTCTACACCGGTCAGATTCGCAATCTTGTGCCGCGACTATTTACTA
TCTACCTACCCCCCCCTCCCTCCCTCCCCCTCGCGACCCCCATAACCATG
TATTTAGCCCGCCCATTGCATTCATACATTGCCTTGCGTCGACGACGCCC
TTCCCCGTTGCGCTTGGCGGGCTGTAGTGCGGCCTAAATGGTATGACAAC
GAACGGTAACTTTCTTGAAGATGCCAGCTCGCTTGCTGCGATGACCCCTT
TCGCCCAAACCTGAAACTACCCAAGGGATAATAAAATAAGAAGACAAAAT
AAATAAAATAAATAAATAAATAATAGCCCGAAGATGTTTTGATAACTTCG
TGCTCTGCATACTACATACATACTATATGTACACAAGTCGCCCGTAATTT
GACTTGTATTGGCGGCGGTTTCGGGGTTTCTCGCGTTTCGGGGTCTCGCT
CGCAGGCTGAAGTCTATATACCCTGCCCTCCGTTCACGAACAGAACGACC
TTGACAGGGAGGCTGCCGCAGAGGAAGAAGAGGGAGAACAAAAACAAGTA
AAACGAGAAAACGAGGAATCAGAAGAAGAAGAGGAAAGAAGAAGAGATAG
AATTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1961:2877..8933+

>mRNA_L-elsbetiae_contig1961.5845.1 ID=mRNA_L-elsbetiae_contig1961.5845.1|Name=mRNA_L-elsbetiae_contig1961.5845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig1961:2877..8933+ (Laminarionema elsbetiae ELsaHSoW15)
TCATTGGCCAGGCAACCTGCAATACTGAGCTGTGACTGTTGCGAGTGGCC
GATGGCATCACCAGAGAGCGATGGGCCGTCATACGGTACTATTCTGCGGG
AAGTCTCCATCATTCTGCGAGCCGCCGAAGACGGCAACAAGCTAACCTTC
AGACAGTCATTGGCCAGGCAACCTGCAATACTGAGCTGTGACTGTTGCGA
GTGGCCGATGGCATCACCAGAGAGCGATGGGCCGTCATACGGTACTATTC
TGCGGGAAGTCTCCATCATTCTGCGAGCCGCCGAAGACGGCAACAAGCTA
ACCTTCAGACAGCTTCGTCTGGCGGTGGAGAAATCCCTGGGGCTGCCGGA
GGACTCGCTGCACAAGGGGAAGCACAAGGCGAGCATCAAGAAGGCCGCGC
ATTCCGTCATGCTTCGTCTGGCGGTGGAGAAATCCCTGGGGCTGCCGGAG
GACTCGCTGCACAAGGGGAAGCACAAGGCGAGCATCAAGAAGGCCGCGCA
TTCCGTCATGAACGACCTTGACAGGGAGGCTGCCGCAGAGGAAGAAGAGG
GAGAACAAAAACAAGTAAAACGAGAAAACGAGGAATCAGAAGAAGAAGAG
GAAAGAAGAAGAGATAGAATTCGAAACGACCTTGACAGGGAGGCTGCCGC
AGAGGAAGAAGAGGGAGAACAAAAACAAGTAAAACGAGAAAACGAGGAAT
CAGAAGAAGAAGAGGAAAGAAGAAGAGATAGAATTCGA
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