mRNA_L-elsbetiae_contig19608.5844.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19608.5844.1
Unique NamemRNA_L-elsbetiae_contig19608.5844.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19608.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19608contigL-elsbetiae_contig19608:645..1060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size416
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19608.5844.1prot_L-elsbetiae_contig19608.5844.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19608 666..1052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.632257-UTR-L-elsbetiae_contig19608:644..6651622815813.632257-UTR-L-elsbetiae_contig19608:644..665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19608 645..665 +
1691683119.7684364-UTR-L-elsbetiae_contig19608:644..6651691683119.7684364-UTR-L-elsbetiae_contig19608:644..665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19608 645..665 +
1622815813.6572595-UTR-L-elsbetiae_contig19608:1052..10601622815813.6572595-UTR-L-elsbetiae_contig19608:1052..1060Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19608 1053..1060 +
1691683119.7982633-UTR-L-elsbetiae_contig19608:1052..10601691683119.7982633-UTR-L-elsbetiae_contig19608:1052..1060Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19608 1053..1060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.647307-CDS-L-elsbetiae_contig19608:665..10521622815813.647307-CDS-L-elsbetiae_contig19608:665..1052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19608 666..1052 +
1691683119.7825468-CDS-L-elsbetiae_contig19608:665..10521691683119.7825468-CDS-L-elsbetiae_contig19608:665..1052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19608 666..1052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19608.5844.1

>prot_L-elsbetiae_contig19608.5844.1 ID=prot_L-elsbetiae_contig19608.5844.1|Name=mRNA_L-elsbetiae_contig19608.5844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MLLLCTLKQIFWRNRLSLHRDSFWFGGVAGGGESLLGPNCQQLTESVRRN
FAFASACPPPAADGHKTPFIISTKLRGRGLLSASGRFFAHTRVATTRVAV
KCCNCRTCIRGLARPDLDSTAVYLVKTL*
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mRNA from alignment at L-elsbetiae_contig19608:645..1060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19608.5844.1 ID=mRNA_L-elsbetiae_contig19608.5844.1|Name=mRNA_L-elsbetiae_contig19608.5844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=416bp|location=Sequence derived from alignment at L-elsbetiae_contig19608:645..1060+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGAAGTAAAAAAAAAGTGGATGTTGCTATTATGTACACTGAAACAGAT
TTTCTGGCGGAATCGATTAAGTCTACATCGCGACTCATTCTGGTTTGGGG
GTGTGGCCGGTGGCGGGGAGTCATTACTTGGTCCCAACTGCCAGCAGCTC
ACCGAAAGTGTCCGACGAAATTTTGCGTTTGCAAGCGCCTGCCCCCCGCC
TGCCGCAGATGGCCACAAGACTCCATTTATCATCTCCACAAAGCTGAGAG
GACGAGGTCTCCTCTCAGCTTCGGGGAGGTTTTTTGCGCACACGAGGGTG
GCAACAACGAGAGTCGCTGTAAAATGTTGCAATTGTCGGACATGCATCCG
GGGCTTGGCGAGACCCGACCTGGACTCTACAGCAGTATATTTAGTTAAGA
CATTGTAGCCACATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19608:645..1060+

>mRNA_L-elsbetiae_contig19608.5844.1 ID=mRNA_L-elsbetiae_contig19608.5844.1|Name=mRNA_L-elsbetiae_contig19608.5844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig19608:645..1060+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTATTATGTACACTGAAACAGATTTTCTGGCGGAATCGATTAAG
TCTACATCGCGACTCATTCTGGTTTGGGGGTGTGGCCGGTGGCGGGGAGT
CATTACTTGGTCCCAACTGCCAGCAGCTCACCGAAAGTGTCCGACGAAAT
TTTGCGTTTGCAAGCGCCTGCCCCCCGCCTGCCGCAGATGGCCACAAGAC
TCCATTTATCATCTCCACAAAGCTGAGAGGACGAGGTCTCCTCTCAGCTT
CGGGGAGGTTTTTTGCGCACACGAGGGTGGCAACAACGAGAGTCGCTGTA
AAATGTTGCAATTGTCGGACATGCATCCGGGGCTTGGCGAGACCCGACCT
GGACTCTACAGCAGTATATTTAGTTAAGACATTGTAGATGTTGCTATTAT
GTACACTGAAACAGATTTTCTGGCGGAATCGATTAAGTCTACATCGCGAC
TCATTCTGGTTTGGGGGTGTGGCCGGTGGCGGGGAGTCATTACTTGGTCC
CAACTGCCAGCAGCTCACCGAAAGTGTCCGACGAAATTTTGCGTTTGCAA
GCGCCTGCCCCCCGCCTGCCGCAGATGGCCACAAGACTCCATTTATCATC
TCCACAAAGCTGAGAGGACGAGGTCTCCTCTCAGCTTCGGGGAGGTTTTT
TGCGCACACGAGGGTGGCAACAACGAGAGTCGCTGTAAAATGTTGCAATT
GTCGGACATGCATCCGGGGCTTGGCGAGACCCGACCTGGACTCTACAGCA
GTATATTTAGTTAAGACATTGTAG
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