mRNA_L-elsbetiae_contig196.5837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig196.5837.1
Unique NamemRNA_L-elsbetiae_contig196.5837.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig196.5837.1 vs. uniprot
Match: D7FK01_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK01_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 4.110e-41
Identity = 134/315 (42.54%), Postives = 161/315 (51.11%), Query Frame = 1 
Query:   79 SSGCLQGRVFGLTGELPRKEVQAALKAHGATVSAIIHKRVSYVLCTADAVKYNTQTVRKALKHGIPLVSQEFIAACALARGVVDPAPFRVTTTATAATAIAAATTRPSSPVASPTLESRPDTGSSKSXXXXXXXXXXXXXXXXXXXPVAVLENVRQPATTRQDGVDAKGGCSKTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLACMSRVLVASEDANKNKGXXXXXXXXXXXRGSKGKDSGGAAVADPCSGAEGASQHGIERSEKKKRRK---VGPEAAGEDAVKAAPVAGGNKHQKGAGRD 1014
            + GCLQG+VFGLTGEL RKE+Q  LKAHGATVSAIIHKRVS+VLCT DAVKYNTQ VRKALKHGIPLVSQ FIAACALA  VVD  PFRV TTA A  +I  A+T   S   +P   +      S S                    V   +  R+ AT  +DGVD  G  SK                                              S   VA  +     G XXXXXXXXXXR ++GKD+  + VAD C G++ AS  G ER ++ K+RK   +  +  G+D   A       + ++G G D
Sbjct:    7 NGGCLQGKVFGLTGELARKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQGFIAACALAGDVVDSTPFRVVTTANAPASIPGASTLAGSNAKAPNDATAVSVEGSNSGSSAKEANT-----------VGTPKGERKTATA-EDGVDTAGDGSKGTRRRRRKDLAQLES-------------------------------SGPEVARSEQPPGDGGXXXXXXXXXXRKNRGKDADSSIVADTCPGSQRASTKGTERPKETKKRKKNHLRTDVVGQDTTTAGKGPESGELRRGDGED 278
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BLAST of mRNA_L-elsbetiae_contig196.5837.1 vs. uniprot
Match: A0A835Z7C4_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.970e-9
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:  103 VFGLTGEL--PRKEVQAALKAHGATVSAIIHKRVSYVLCTADAVKYNTQTVRKALKHGIPLVSQEFIAACALARGVVDPAPF 342
            +F +TG L   R  ++A +  HG  VS I+H RVSYV+C A+AV  NTQ VRKA +  IP+VS+ F+   A  + ++D  P+
Sbjct:  405 IFSVTGSLGAARSTLKALIGQHGGQVSNIVHSRVSYVVCNAEAVANNTQRVRKAARFAIPVVSEAFVVESAAQQKLLDWKPY 486
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BLAST of mRNA_L-elsbetiae_contig196.5837.1 vs. uniprot
Match: A0A8J6C5R2_DIALT (BRCT domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5R2_DIALT)

HSP 1 Score: 63.2 bits (152), Expect = 3.830e-7
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:   64 PVPSPSSGCLQGRVFGLTGELPRKE-VQAALKAHGATVSAIIHKRVSYVLCTADAVKYNTQTVRKALKHGIPLVSQEFIAAC 306
            P P+P    L G +  LTG    ++ ++A L+A+G +   ++H RV+YV+ T  AV++ TQ VRKA+K GIP+VS+ ++  C
Sbjct:  191 PDPTP---LLPGTLVALTGRFDNRDGLKALLRANGISAVTLVHGRVNYVVATDRAVRFQTQHVRKAIKRGIPVVSEPWLRLC 269
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig196.5837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK01_ECTSI4.110e-4142.54BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7C4_9STRA5.970e-943.90BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8J6C5R2_DIALT3.830e-740.24BRCT domain-containing protein n=1 Tax=Diacronema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig196contigL-elsbetiae_contig196:11624..14825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue2e-37
Seed eggNOG ortholog2880.D7FK01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BRCA1 C Terminus (BRCT) domain
EggNOG OGs2EABY@1,2SGKA@2759
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-18_002980.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1534
Cds size1056
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig196.5837.1prot_L-elsbetiae_contig196.5837.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig196 11681..14404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.9422596-UTR-L-elsbetiae_contig196:11623..116801622815812.9422596-UTR-L-elsbetiae_contig196:11623..11680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 11624..11680 +
1691683119.2286692-UTR-L-elsbetiae_contig196:11623..116801691683119.2286692-UTR-L-elsbetiae_contig196:11623..11680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 11624..11680 +
1622815812.9906292-UTR-L-elsbetiae_contig196:14404..148251622815812.9906292-UTR-L-elsbetiae_contig196:14404..14825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 14405..14825 +
1691683119.2755158-UTR-L-elsbetiae_contig196:14404..148251691683119.2755158-UTR-L-elsbetiae_contig196:14404..14825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 14405..14825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.9535823-CDS-L-elsbetiae_contig196:11680..117941622815812.9535823-CDS-L-elsbetiae_contig196:11680..11794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 11681..11794 +
1691683119.2405002-CDS-L-elsbetiae_contig196:11680..117941691683119.2405002-CDS-L-elsbetiae_contig196:11680..11794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 11681..11794 +
1622815812.9653156-CDS-L-elsbetiae_contig196:12643..127601622815812.9653156-CDS-L-elsbetiae_contig196:12643..12760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 12644..12760 +
1691683119.249373-CDS-L-elsbetiae_contig196:12643..127601691683119.249373-CDS-L-elsbetiae_contig196:12643..12760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 12644..12760 +
1622815812.9766445-CDS-L-elsbetiae_contig196:13579..144041622815812.9766445-CDS-L-elsbetiae_contig196:13579..14404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 13580..14404 +
1691683119.2629545-CDS-L-elsbetiae_contig196:13579..144041691683119.2629545-CDS-L-elsbetiae_contig196:13579..14404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 13580..14404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig196.5837.1

>prot_L-elsbetiae_contig196.5837.1 ID=prot_L-elsbetiae_contig196.5837.1|Name=mRNA_L-elsbetiae_contig196.5837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=352bp
MAPVPSPSSGCLQGRVFGLTGELPRKEVQAALKAHGATVSAIIHKRVSYV
LCTADAVKYNTQTVRKALKHGIPLVSQEFIAACALARGVVDPAPFRVTTT
ATAATAIAAATTRPSSPVASPTLESRPDTGSSKSASATAAATAATATAAA
AAAPVAVLENVRQPATTRQDGVDAKGGCSKTKKKKRKRKPVDVSPGDGLA
GVQDDSGGGSGSGNGSGDGGDGLACMSRVLVASEDANKNKGGEKKKKKKE
KKRGSKGKDSGGAAVADPCSGAEGASQHGIERSEKKKRRKVGPEAAGEDA
VKAAPVAGGNKHQKGAGRDSSGADDDAHNSSGAHGGGMRRKKGNRKKEPK
I*
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mRNA from alignment at L-elsbetiae_contig196:11624..14825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig196.5837.1 ID=mRNA_L-elsbetiae_contig196.5837.1|Name=mRNA_L-elsbetiae_contig196.5837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3202bp|location=Sequence derived from alignment at L-elsbetiae_contig196:11624..14825+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGCGATTGGCCTGTGCAAGGGAGTGCAGTCACTGGTTCCACGTACATA
CGTTGGCATGGCTCCGGTACCATCACCATCGTCGGGCTGTTTGCAGGGGC
GAGTATTCGGGCTCACGGGAGAGCTGCCCCGCAAAGAGGTCCAGGCCGCG
CTGAAAGCGCATGGCGCCACGGTAAGACGCCCACTTGAGACCAAAGTAGA
AGGAGCATGGTGGCGTTTCTGAGCCACGCTTCCAGTTTTTGGGGACCTTG
GAAGTGGCAGCAACCGCGACCAGCAGGTTATGTAGTAGGTACATATCCAT
AGAAGTGTTGACTTCGTGCACGGCGAATCGTGGTCCGCCGGTGGATACGT
GGCTACAATAGGGAGGCAGTGTTGTTATCCGGGTCGGAACTTTTGCGCCA
GCACTAGACTATGTACTGCGGAAGAGCGCGTGCGAATCTCGGAGATGTCC
GTCATCACGTTCGACTTTCCGAAGCATTGATCTGAGCCCACAAGAAGTAC
GGCCTGTCTCTCTGTGTGTACCTTTTTTGCACAAGACATGCGCCCTTCCG
CACCCGGAGAGTCAACCGCACGGACGGTATTTACACGTTGGTTTCCTGTT
ATTTAGGAGAGCGAGCTTGGGCGCAGGGAAATCGCCTCTGCCCTGTATTC
ATTCCTGTTCGATGCACCCTCGCCCCGGCTAGTGTGACCGGGTAGTAGAT
CAACGGGGGTGACGTTGATGGGCGTGTGGAATTGGTTGTACCATGCCCGA
AGAGGACCGAGAGAGACGAAAAGAGAGAGTGACCTCGAAAGGAACACACA
AAGCCTATAAAAACGTATACAACCCAAGAGAATGAAATATGCAACCCAAA
GTAACAAAAGTCCGTCGAACCGGCACGTGACCGTGAACCCTGAAATAATC
GTACCGACAATCTTAGTGCCGACCGTGCTTGCCTCCAAAATTCTGCTCTC
AATGAACACCTTTTTTTTTAACCGAGCGACCGCGCGTTGGTGTCTCGTAT
CCATTCGAAAACATACGAAGGTGTCAGCAATTATCCACAAGCGCGTGTCT
TACGTCCTGTGCACGGCTGACGCCGTCAAGTACAACACGCAGACGGTCCG
GAAGGCTCTCAAGCATGGGATCCCGCTCGTTTCTCAGGTGCGTATGTACC
GTAATATCCCTTACCCCCCCCCCCCAAAAAAAAAGCTGGTGCCCTCCCCC
GAAATGAGACCGGTGCGCCCCAAAAACCTTGAGATAGCCCCGAGGCGTCT
CAATTTATATTTGTATCATTGGAATCGCCCGCCTACCTTTGAGAACGCCC
CGGGGTGTTCTTTTTTCGCTGAAGTTTTCCTATCCCCCCGGGGGCGGAGA
TCGCACAACTGCTGTTTGCATTCGAAACCACTACTACTGCGGTGTTGCTG
GTTGTTGTTTGTTGTGTTTGATGGTGCTGTTGACGGTAATTGTTGCTGTT
TTTGAAGATTGCTGTTCAACACCGTTACTGATTAAAAGTCCTTTCCCGAC
AACATCCTAGTGATGTGTGAGTGTACGGCAAAAAAACCAAGACCCGCGTC
CCTGGACTTTTCGCCCCCGTGGGTGCTTTCATTTTTTGTGGAAATGTCCT
GGGAATATCCCCCCCCCCAACCTTGGCGTTCCCTTTCGCACAAAAAATGT
AGCCCCCCCCCCCCCCCCCCCCCCGGGGCATTCTCAAGGGATATTACCAT
GTTCGAGAGTACGTACATTTACCAAGCTGCAGCTACGGGCCGGAAAGTAC
GGGCTCTGCGTAGCTGTCCTTGCCGCGGCCTGGCGTAACCGAAGGCTCAC
GTTCTATCCTGAGCAGACGTATACGCCCCGTATTGTGAAGAGATAAACGT
ATGCCTCTTGCGGGATCCCCGTTTGGTATTTATCTGATGCGTAGACTACA
TGTGTATCGCTTTGTATGCACGTCCTTTCTTCACCCAATGCGCGTCGGCC
GACCAGGAGTTCATCGCGGCGTGCGCGCTTGCGAGGGGCGTAGTCGATCC
AGCACCCTTTCGAGTCACCACCACCGCGACCGCAGCAACGGCAATAGCAG
CAGCAACAACAAGGCCCTCTTCCCCGGTGGCTTCCCCGACGCTCGAGAGT
CGCCCAGACACAGGATCGAGCAAATCAGCCTCGGCGACGGCAGCAGCAAC
AGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCTCCGGTTGCAGTGCTTG
AGAATGTGCGACAGCCGGCAACAACGCGGCAGGATGGCGTGGACGCCAAA
GGAGGGTGCTCCAAGACCAAGAAGAAGAAGCGAAAGAGAAAACCTGTGGA
TGTTTCTCCAGGAGACGGGCTGGCAGGGGTACAGGATGATAGCGGTGGTG
GCAGTGGCAGCGGCAATGGCAGTGGTGATGGTGGTGATGGCCTCGCCTGC
ATGAGTAGGGTATTGGTCGCTTCGGAGGACGCCAATAAAAATAAGGGGGG
GGAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAGGGGAAGTAAAGGAAAGG
ACTCGGGCGGGGCTGCTGTGGCCGATCCTTGTTCCGGTGCCGAAGGGGCT
AGTCAGCATGGAATCGAGCGTTCGGAGAAGAAGAAGAGGCGCAAAGTTGG
ACCCGAAGCAGCAGGCGAAGACGCTGTAAAAGCAGCACCCGTAGCTGGCG
GAAACAAGCACCAGAAAGGCGCCGGAAGGGATAGCAGCGGTGCAGATGAC
GACGCACACAACAGCAGTGGTGCCCACGGAGGCGGTATGAGGAGAAAGAA
GGGGAACCGCAAGAAAGAACCGAAAATATAGCATTCTAAAGCGCGACCTC
TTCCCCTTGGGGCGAAATATTTCGCTGCACGCGCTGTGGGGGAAACCCTG
AACTTTTTTTCTGTGACGACATATTTTTAGTTCTTCTATCCGTGATTCTT
TGGGTGCTTATTGTTGTTCCCTTCTTGTCGTGCCAGTTGTCCGCTGGTTT
ACGCGGTGTGGTTCTTCTTGTGCGTGGTTGGGCATTGCTTGGCTTTTGAT
CGATTGCTCATTCGAGATTTTCGTTACATCGACCGTTCTTCTCCGCCTCA
GAGAGTGGCGGGGGCGGGTTTGGATGTACAACTAGATAAGACACGCTTAT
AACGCGTTCAACAATAATAATACGTGTTCCAATGTGGATGGTGGGTACTC
GAAGGAAGCAACGGAGCGCGAACGATGAAGGGAAACTCGACACGGAGAAG
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig196:11624..14825+

>mRNA_L-elsbetiae_contig196.5837.1 ID=mRNA_L-elsbetiae_contig196.5837.1|Name=mRNA_L-elsbetiae_contig196.5837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2112bp|location=Sequence derived from alignment at L-elsbetiae_contig196:11624..14825+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCCGGTACCATCACCATCGTCGGGCTGTTTGCAGGGGCGAGTATT
CGGGCTCACGGGAGAGCTGCCCCGCAAAGAGGTCCAGGCCGCGCTGAAAG
CGCATGGCGCCACGATGGCTCCGGTACCATCACCATCGTCGGGCTGTTTG
CAGGGGCGAGTATTCGGGCTCACGGGAGAGCTGCCCCGCAAAGAGGTCCA
GGCCGCGCTGAAAGCGCATGGCGCCACGGTGTCAGCAATTATCCACAAGC
GCGTGTCTTACGTCCTGTGCACGGCTGACGCCGTCAAGTACAACACGCAG
ACGGTCCGGAAGGCTCTCAAGCATGGGATCCCGCTCGTTTCTCAGGTGTC
AGCAATTATCCACAAGCGCGTGTCTTACGTCCTGTGCACGGCTGACGCCG
TCAAGTACAACACGCAGACGGTCCGGAAGGCTCTCAAGCATGGGATCCCG
CTCGTTTCTCAGGAGTTCATCGCGGCGTGCGCGCTTGCGAGGGGCGTAGT
CGATCCAGCACCCTTTCGAGTCACCACCACCGCGACCGCAGCAACGGCAA
TAGCAGCAGCAACAACAAGGCCCTCTTCCCCGGTGGCTTCCCCGACGCTC
GAGAGTCGCCCAGACACAGGATCGAGCAAATCAGCCTCGGCGACGGCAGC
AGCAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCTCCGGTTGCAG
TGCTTGAGAATGTGCGACAGCCGGCAACAACGCGGCAGGATGGCGTGGAC
GCCAAAGGAGGGTGCTCCAAGACCAAGAAGAAGAAGCGAAAGAGAAAACC
TGTGGATGTTTCTCCAGGAGACGGGCTGGCAGGGGTACAGGATGATAGCG
GTGGTGGCAGTGGCAGCGGCAATGGCAGTGGTGATGGTGGTGATGGCCTC
GCCTGCATGAGTAGGGTATTGGTCGCTTCGGAGGACGCCAATAAAAATAA
GGGGGGGGAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAGGGGAAGTAAAG
GAAAGGACTCGGGCGGGGCTGCTGTGGCCGATCCTTGTTCCGGTGCCGAA
GGGGCTAGTCAGCATGGAATCGAGCGTTCGGAGAAGAAGAAGAGGCGCAA
AGTTGGACCCGAAGCAGCAGGCGAAGACGCTGTAAAAGCAGCACCCGTAG
CTGGCGGAAACAAGCACCAGAAAGGCGCCGGAAGGGATAGCAGCGGTGCA
GATGACGACGCACACAACAGCAGTGGTGCCCACGGAGGCGGTATGAGGAG
AAAGAAGGGGAACCGCAAGAAAGAACCGAAAATATAGGAGTTCATCGCGG
CGTGCGCGCTTGCGAGGGGCGTAGTCGATCCAGCACCCTTTCGAGTCACC
ACCACCGCGACCGCAGCAACGGCAATAGCAGCAGCAACAACAAGGCCCTC
TTCCCCGGTGGCTTCCCCGACGCTCGAGAGTCGCCCAGACACAGGATCGA
GCAAATCAGCCTCGGCGACGGCAGCAGCAACAGCAGCAACAGCAACAGCA
GCAGCAGCAGCAGCTCCGGTTGCAGTGCTTGAGAATGTGCGACAGCCGGC
AACAACGCGGCAGGATGGCGTGGACGCCAAAGGAGGGTGCTCCAAGACCA
AGAAGAAGAAGCGAAAGAGAAAACCTGTGGATGTTTCTCCAGGAGACGGG
CTGGCAGGGGTACAGGATGATAGCGGTGGTGGCAGTGGCAGCGGCAATGG
CAGTGGTGATGGTGGTGATGGCCTCGCCTGCATGAGTAGGGTATTGGTCG
CTTCGGAGGACGCCAATAAAAATAAGGGGGGGGAGAAGAAGAAGAAGAAG
AAGGAGAAGAAGAGGGGAAGTAAAGGAAAGGACTCGGGCGGGGCTGCTGT
GGCCGATCCTTGTTCCGGTGCCGAAGGGGCTAGTCAGCATGGAATCGAGC
GTTCGGAGAAGAAGAAGAGGCGCAAAGTTGGACCCGAAGCAGCAGGCGAA
GACGCTGTAAAAGCAGCACCCGTAGCTGGCGGAAACAAGCACCAGAAAGG
CGCCGGAAGGGATAGCAGCGGTGCAGATGACGACGCACACAACAGCAGTG
GTGCCCACGGAGGCGGTATGAGGAGAAAGAAGGGGAACCGCAAGAAAGAA
CCGAAAATATAG
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