mRNA_L-elsbetiae_contig19562.5827.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19562.5827.1
Unique NamemRNA_L-elsbetiae_contig19562.5827.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19562.5827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19562contigL-elsbetiae_contig19562:1040..1525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size471
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.7764587-UTR-L-elsbetiae_contig19562:1039..10541622815811.7764587-UTR-L-elsbetiae_contig19562:1039..1054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19562 1040..1054 +
1691683118.3964977-UTR-L-elsbetiae_contig19562:1039..10541691683118.3964977-UTR-L-elsbetiae_contig19562:1039..1054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19562 1040..1054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.786946-CDS-L-elsbetiae_contig19562:1054..15251622815811.786946-CDS-L-elsbetiae_contig19562:1054..1525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19562 1055..1525 +
1691683118.4098063-CDS-L-elsbetiae_contig19562:1054..15251691683118.4098063-CDS-L-elsbetiae_contig19562:1054..1525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19562 1055..1525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19562.5827.1prot_L-elsbetiae_contig19562.5827.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19562 1055..1525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19562.5827.1

>prot_L-elsbetiae_contig19562.5827.1 ID=prot_L-elsbetiae_contig19562.5827.1|Name=mRNA_L-elsbetiae_contig19562.5827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MASPQLSDAQLAAATPVADGTATQALPCFDQPGTGTRNSPAPSRPELVLG
RVYTRDKESLQGKSTTALLFAGDAYRQGLGRGVRDPHGGPLQRGGKAGAW
SPGFGCSKKGDWSTRLLHGSAGSAPRPPLREWGERAPAEPGGGRQGPTRG
SGRGLN*
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mRNA from alignment at L-elsbetiae_contig19562:1040..1525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19562.5827.1 ID=mRNA_L-elsbetiae_contig19562.5827.1|Name=mRNA_L-elsbetiae_contig19562.5827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig19562:1040..1525+ (Laminarionema elsbetiae ELsaHSoW15)
GAACAACAGGTTACCATGGCCAGCCCCCAACTGAGCGATGCCCAGCTGGC
GGCTGCCACCCCAGTCGCCGACGGGACGGCGACACAAGCGCTCCCGTGTT
TCGACCAGCCGGGAACCGGCACTCGCAACTCGCCTGCTCCCAGCCGCCCG
GAACTCGTCCTGGGCCGAGTGTACACGCGCGACAAAGAGTCGCTGCAGGG
CAAAAGCACAACCGCCCTGCTCTTTGCTGGCGATGCCTATCGTCAAGGCC
TTGGGCGTGGCGTCAGAGACCCACATGGAGGACCTCTTCAACGAGGGGGG
AAGGCTGGAGCGTGGAGCCCAGGGTTCGGATGCAGCAAAAAAGGCGATTG
GAGCACGCGCCTTCTTCACGGAAGTGCTGGATCTGCTCCAAGGCCACCTT
TACGTGAGTGGGGAGAACGTGCTCCTGCCGAGCCCGGCGGCGGCAGGCAA
GGACCCACTCGGGGGAGCGGGCGCGGGCTCAATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19562:1040..1525+

>mRNA_L-elsbetiae_contig19562.5827.1 ID=mRNA_L-elsbetiae_contig19562.5827.1|Name=mRNA_L-elsbetiae_contig19562.5827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig19562:1040..1525+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAGCCCCCAACTGAGCGATGCCCAGCTGGCGGCTGCCACCCCAGT
CGCCGACGGGACGGCGACACAAGCGCTCCCGTGTTTCGACCAGCCGGGAA
CCGGCACTCGCAACTCGCCTGCTCCCAGCCGCCCGGAACTCGTCCTGGGC
CGAGTGTACACGCGCGACAAAGAGTCGCTGCAGGGCAAAAGCACAACCGC
CCTGCTCTTTGCTGGCGATGCCTATCGTCAAGGCCTTGGGCGTGGCGTCA
GAGACCCACATGGAGGACCTCTTCAACGAGGGGGGAAGGCTGGAGCGTGG
AGCCCAGGGTTCGGATGCAGCAAAAAAGGCGATTGGAGCACGCGCCTTCT
TCACGGAAGTGCTGGATCTGCTCCAAGGCCACCTTTACGTGAGTGGGGAG
AACGTGCTCCTGCCGAGCCCGGCGGCGGCAGGCAAGGACCCACTCGGGGG
AGCGGGCGCGGGCTCAATTGAATGGCCAGCCCCCAACTGAGCGATGCCCA
GCTGGCGGCTGCCACCCCAGTCGCCGACGGGACGGCGACACAAGCGCTCC
CGTGTTTCGACCAGCCGGGAACCGGCACTCGCAACTCGCCTGCTCCCAGC
CGCCCGGAACTCGTCCTGGGCCGAGTGTACACGCGCGACAAAGAGTCGCT
GCAGGGCAAAAGCACAACCGCCCTGCTCTTTGCTGGCGATGCCTATCGTC
AAGGCCTTGGGCGTGGCGTCAGAGACCCACATGGAGGACCTCTTCAACGA
GGGGGGAAGGCTGGAGCGTGGAGCCCAGGGTTCGGATGCAGCAAAAAAGG
CGATTGGAGCACGCGCCTTCTTCACGGAAGTGCTGGATCTGCTCCAAGGC
CACCTTTACGTGAGTGGGGAGAACGTGCTCCTGCCGAGCCCGGCGGCGGC
AGGCAAGGACCCACTCGGGGGAGCGGGCGCGGGCTCAATTGA
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