mRNA_L-elsbetiae_contig19561.5826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19561.5826.1
Unique NamemRNA_L-elsbetiae_contig19561.5826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19561.5826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19561contigL-elsbetiae_contig19561:344..1766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1425
Cds size1422
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.7438993-CDS-L-elsbetiae_contig19561:343..17651622815811.7438993-CDS-L-elsbetiae_contig19561:343..1765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19561 344..1765 +
1691683118.3810415-CDS-L-elsbetiae_contig19561:343..17651691683118.3810415-CDS-L-elsbetiae_contig19561:343..1765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19561 344..1765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19561.5826.1prot_L-elsbetiae_contig19561.5826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19561 344..1765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19561.5826.1

>prot_L-elsbetiae_contig19561.5826.1 ID=prot_L-elsbetiae_contig19561.5826.1|Name=mRNA_L-elsbetiae_contig19561.5826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=474bp
AVAEPAPPEAAGQQLPGPPPTPTVPTIPAAPCQNGENGSTAPPTATSAPT
APCIAEEKPSEGTATADKTIAGSPFPGHVGVATSSLEKAVAAAAEAVTAA
AEQAEGEITASTPAGCPAQKPAPVTGTEANTAPVTEAVTVAAAGISTSSP
TAATIPPATPTTSGPDAGGGGPSMPVAQPVVATVAAAPVGSAAVPAPQTA
TAVAATHPSGGGPGVAAGAATSSSTCSIAAMGAAPGVFADISAFAEESSG
ISFRNSLPPPPPPPSPPPPTSSLPAAPSVATTTPPACPPAPAPAPAPAPV
PSAADQSQGGGLAAAAGLLLVHHAGAAAAAASAAVAQQAVGAVAVTAETQ
EPEQQQQQQQQQQQDMRLELEQQVRPMAVQGQETGEEKQVQGSQQPGFEE
GHASGPAAATAQASAADAQESRGRPGVNKRKARGKRPQQQEEEEEEEEEE
GKEENEDIDAERGEEERVAQAGGE
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mRNA from alignment at L-elsbetiae_contig19561:344..1766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19561.5826.1 ID=mRNA_L-elsbetiae_contig19561.5826.1|Name=mRNA_L-elsbetiae_contig19561.5826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1423bp|location=Sequence derived from alignment at L-elsbetiae_contig19561:344..1766+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCGCAGAACCAGCGCCACCGGAAGCAGCCGGACAACAGCTACCGGG
ACCTCCACCAACACCTACGGTGCCCACCATACCGGCAGCACCTTGCCAAA
ACGGCGAAAACGGCAGCACCGCACCGCCCACCGCTACCTCAGCGCCCACC
GCTCCATGTATTGCGGAAGAAAAGCCAAGCGAGGGCACCGCTACGGCAGA
CAAAACTATCGCAGGGTCCCCTTTTCCCGGCCATGTTGGAGTCGCGACCT
CTTCGTTGGAGAAGGCTGTCGCAGCGGCGGCAGAGGCAGTGACGGCAGCA
GCCGAGCAAGCAGAGGGTGAAATCACCGCCTCCACTCCTGCCGGCTGCCC
GGCACAGAAACCCGCCCCAGTGACCGGCACCGAAGCTAACACGGCACCCG
TCACTGAGGCGGTCACGGTGGCGGCGGCAGGGATAAGTACCTCATCACCA
ACAGCCGCGACGATCCCACCGGCGACGCCGACTACAAGCGGACCAGACGC
TGGCGGTGGCGGACCCTCGATGCCCGTTGCACAGCCCGTTGTGGCAACGG
TAGCGGCGGCGCCCGTCGGCTCTGCCGCGGTCCCCGCTCCACAGACGGCA
ACGGCGGTAGCAGCGACGCACCCGTCCGGCGGCGGCCCTGGTGTCGCCGC
CGGCGCGGCCACCTCGTCGTCCACGTGCTCCATAGCGGCGATGGGGGCGG
CACCGGGAGTCTTCGCGGATATCAGCGCGTTTGCCGAAGAGAGCAGTGGC
ATTAGCTTCCGTAACAGCCTGCCCCCACCGCCACCACCTCCGTCGCCGCC
GCCGCCAACGAGTTCCTTGCCTGCCGCCCCATCGGTGGCTACGACGACCC
CGCCGGCGTGTCCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCAGTT
CCGTCCGCGGCCGACCAGAGTCAAGGAGGAGGGCTTGCGGCGGCGGCTGG
GCTGTTGTTGGTGCATCACGCTGGTGCTGCTGCCGCTGCTGCCAGTGCTG
CTGTTGCTCAGCAGGCAGTAGGAGCGGTGGCCGTGACTGCGGAGACTCAG
GAGCCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGACATGAG
GCTGGAACTGGAGCAGCAGGTGCGGCCCATGGCCGTGCAGGGACAGGAGA
CGGGAGAGGAGAAGCAGGTGCAAGGCTCGCAGCAGCCCGGATTTGAGGAG
GGACACGCGTCGGGCCCGGCGGCGGCCACGGCGCAAGCGAGTGCCGCAGA
CGCACAGGAGTCACGGGGGCGGCCGGGTGTCAATAAACGGAAGGCTCGAG
GCAAGAGACCGCAGCAGCAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAG
GGCAAGGAAGAGAACGAAGACATCGACGCAGAACGGGGGGAAGAGGAGAG
AGTCGCGCAAGCGGGAGGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19561:344..1766+

>mRNA_L-elsbetiae_contig19561.5826.1 ID=mRNA_L-elsbetiae_contig19561.5826.1|Name=mRNA_L-elsbetiae_contig19561.5826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2844bp|location=Sequence derived from alignment at L-elsbetiae_contig19561:344..1766+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCGCAGAACCAGCGCCACCGGAAGCAGCCGGACAACAGCTACCGGG
ACCTCCACCAACACCTACGGTGCCCACCATACCGGCAGCACCTTGCCAAA
ACGGCGAAAACGGCAGCACCGCACCGCCCACCGCTACCTCAGCGCCCACC
GCTCCATGTATTGCGGAAGAAAAGCCAAGCGAGGGCACCGCTACGGCAGA
CAAAACTATCGCAGGGTCCCCTTTTCCCGGCCATGTTGGAGTCGCGACCT
CTTCGTTGGAGAAGGCTGTCGCAGCGGCGGCAGAGGCAGTGACGGCAGCA
GCCGAGCAAGCAGAGGGTGAAATCACCGCCTCCACTCCTGCCGGCTGCCC
GGCACAGAAACCCGCCCCAGTGACCGGCACCGAAGCTAACACGGCACCCG
TCACTGAGGCGGTCACGGTGGCGGCGGCAGGGATAAGTACCTCATCACCA
ACAGCCGCGACGATCCCACCGGCGACGCCGACTACAAGCGGACCAGACGC
TGGCGGTGGCGGACCCTCGATGCCCGTTGCACAGCCCGTTGTGGCAACGG
TAGCGGCGGCGCCCGTCGGCTCTGCCGCGGTCCCCGCTCCACAGACGGCA
ACGGCGGTAGCAGCGACGCACCCGTCCGGCGGCGGCCCTGGTGTCGCCGC
CGGCGCGGCCACCTCGTCGTCCACGTGCTCCATAGCGGCGATGGGGGCGG
CACCGGGAGTCTTCGCGGATATCAGCGCGTTTGCCGAAGAGAGCAGTGGC
ATTAGCTTCCGTAACAGCCTGCCCCCACCGCCACCACCTCCGTCGCCGCC
GCCGCCAACGAGTTCCTTGCCTGCCGCCCCATCGGTGGCTACGACGACCC
CGCCGGCGTGTCCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCAGTT
CCGTCCGCGGCCGACCAGAGTCAAGGAGGAGGGCTTGCGGCGGCGGCTGG
GCTGTTGTTGGTGCATCACGCTGGTGCTGCTGCCGCTGCTGCCAGTGCTG
CTGTTGCTCAGCAGGCAGTAGGAGCGGTGGCCGTGACTGCGGAGACTCAG
GAGCCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGACATGAG
GCTGGAACTGGAGCAGCAGGTGCGGCCCATGGCCGTGCAGGGACAGGAGA
CGGGAGAGGAGAAGCAGGTGCAAGGCTCGCAGCAGCCCGGATTTGAGGAG
GGACACGCGTCGGGCCCGGCGGCGGCCACGGCGCAAGCGAGTGCCGCAGA
CGCACAGGAGTCACGGGGGCGGCCGGGTGTCAATAAACGGAAGGCTCGAG
GCAAGAGACCGCAGCAGCAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAG
GGCAAGGAAGAGAACGAAGACATCGACGCAGAACGGGGGGAAGAGGAGAG
AGTCGCGCAAGCGGGAGGCGAGGCCGTCGCAGAACCAGCGCCACCGGAAG
CAGCCGGACAACAGCTACCGGGACCTCCACCAACACCTACGGTGCCCACC
ATACCGGCAGCACCTTGCCAAAACGGCGAAAACGGCAGCACCGCACCGCC
CACCGCTACCTCAGCGCCCACCGCTCCATGTATTGCGGAAGAAAAGCCAA
GCGAGGGCACCGCTACGGCAGACAAAACTATCGCAGGGTCCCCTTTTCCC
GGCCATGTTGGAGTCGCGACCTCTTCGTTGGAGAAGGCTGTCGCAGCGGC
GGCAGAGGCAGTGACGGCAGCAGCCGAGCAAGCAGAGGGTGAAATCACCG
CCTCCACTCCTGCCGGCTGCCCGGCACAGAAACCCGCCCCAGTGACCGGC
ACCGAAGCTAACACGGCACCCGTCACTGAGGCGGTCACGGTGGCGGCGGC
AGGGATAAGTACCTCATCACCAACAGCCGCGACGATCCCACCGGCGACGC
CGACTACAAGCGGACCAGACGCTGGCGGTGGCGGACCCTCGATGCCCGTT
GCACAGCCCGTTGTGGCAACGGTAGCGGCGGCGCCCGTCGGCTCTGCCGC
GGTCCCCGCTCCACAGACGGCAACGGCGGTAGCAGCGACGCACCCGTCCG
GCGGCGGCCCTGGTGTCGCCGCCGGCGCGGCCACCTCGTCGTCCACGTGC
TCCATAGCGGCGATGGGGGCGGCACCGGGAGTCTTCGCGGATATCAGCGC
GTTTGCCGAAGAGAGCAGTGGCATTAGCTTCCGTAACAGCCTGCCCCCAC
CGCCACCACCTCCGTCGCCGCCGCCGCCAACGAGTTCCTTGCCTGCCGCC
CCATCGGTGGCTACGACGACCCCGCCGGCGTGTCCCCCGGCCCCGGCCCC
GGCCCCGGCCCCGGCCCCAGTTCCGTCCGCGGCCGACCAGAGTCAAGGAG
GAGGGCTTGCGGCGGCGGCTGGGCTGTTGTTGGTGCATCACGCTGGTGCT
GCTGCCGCTGCTGCCAGTGCTGCTGTTGCTCAGCAGGCAGTAGGAGCGGT
GGCCGTGACTGCGGAGACTCAGGAGCCGGAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAAGACATGAGGCTGGAACTGGAGCAGCAGGTGCGGCCC
ATGGCCGTGCAGGGACAGGAGACGGGAGAGGAGAAGCAGGTGCAAGGCTC
GCAGCAGCCCGGATTTGAGGAGGGACACGCGTCGGGCCCGGCGGCGGCCA
CGGCGCAAGCGAGTGCCGCAGACGCACAGGAGTCACGGGGGCGGCCGGGT
GTCAATAAACGGAAGGCTCGAGGCAAGAGACCGCAGCAGCAGGAGGAGGA
GGAAGAGGAAGAGGAAGAGGAGGGCAAGGAAGAGAACGAAGACATCGACG
CAGAACGGGGGGAAGAGGAGAGAGTCGCGCAAGCGGGAGGCGAG
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