mRNA_L-elsbetiae_contig1956.5825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1956.5825.1
Unique NamemRNA_L-elsbetiae_contig1956.5825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: D7FXU6_ECTSI (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXU6_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.140e-45
Identity = 89/96 (92.71%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 KQMVKDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            + MVKDLK+AAEVSMGTEIT+IDIVSIK+LA+QVVALSEYRLQLS+YLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK
Sbjct:  231 EDMVKDLKEAAEVSMGTEITMIDIVSIKSLADQVVALSEYRLQLSEYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 326
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A7S1D2T7_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2T7_CYCTE)

HSP 1 Score: 135 bits (340), Expect = 1.960e-38
Identity = 71/92 (77.17%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:   13 KDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            K +KDAAE+SMGTEI  +DI+ I+ALAEQV++++EYR QL +YLR+RM AIAPNLTI+VGELVGARLI+HAGSL+NLAKQPASTVQILGAEK
Sbjct:   21 KSVKDAAEISMGTEIADMDIIHIQALAEQVLSMTEYRSQLWEYLRNRMNAIAPNLTILVGELVGARLISHAGSLLNLAKQPASTVQILGAEK 112
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A7S2UY01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY01_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.090e-37
Identity = 74/92 (80.43%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:   13 KDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            K LK +AEVSMGTEI  ID+ SIKALA+QVV+LSEYR+QL DYL++RMQAIAPNLTI+VGELVGARL+AHAGSL+NLAK PAST+QILGAEK
Sbjct:  180 KALKASAEVSMGTEINDIDVASIKALADQVVSLSEYRVQLYDYLKNRMQAIAPNLTILVGELVGARLLAHAGSLLNLAKHPASTIQILGAEK 271
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A835YZD1_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.200e-36
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:   19 LKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            LK+ AE+SMGTEIT +D+ SI ALAEQVVALSEYR+QL DYL++RM AIAPNLTI+VGELVGARLIAHAGSL+NLAK PAST+QILGAEK
Sbjct:  237 LKENAEISMGTEITEMDLKSISALAEQVVALSEYRIQLYDYLKNRMAAIAPNLTILVGELVGARLIAHAGSLLNLAKHPASTIQILGAEK 326
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A6U3FQT3_9CHLO (Hypothetical protein n=2 Tax=Mamiellaceae TaxID=41873 RepID=A0A6U3FQT3_9CHLO)

HSP 1 Score: 137 bits (344), Expect = 3.370e-36
Identity = 72/92 (78.26%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:   13 KDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            +DLKDAA +SMGTEI++ D+ +IK LA+QVV+LSEYR+QL DYL+SRM AIAPNLT++VGELVGARLI+HAGSLINLAK PASTVQILGAEK
Sbjct:  230 QDLKDAAVISMGTEISVDDLDNIKQLADQVVSLSEYRIQLYDYLKSRMNAIAPNLTVLVGELVGARLISHAGSLINLAKHPASTVQILGAEK 321
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A7S0IM80_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IM80_MICPS)

HSP 1 Score: 136 bits (343), Expect = 3.710e-36
Identity = 72/92 (78.26%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:   13 KDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            ++LKDAA VSMGTE+++ D+ +IK LAEQVV+LSEYR+QL DYL+SRM AIAPNLT++VGELVGARLI+HAGSLINLAK PASTVQILGAEK
Sbjct:  231 QELKDAAIVSMGTEVSVDDLENIKQLAEQVVSLSEYRMQLYDYLKSRMHAIAPNLTVLVGELVGARLISHAGSLINLAKHPASTVQILGAEK 322
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A7S1YVM4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1YVM4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.100e-35
Identity = 72/92 (78.26%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:   13 KDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            K +K+AAEVSMGTEI+ +DIV+IKALAEQV++++EYR QL +YL++RM AIAPNLTI+VGELVGARLI+HAGSL+NLAKQPASTVQILGAEK
Sbjct:  275 KAVKEAAEVSMGTEISDLDIVNIKALAEQVLSMTEYRAQLFEYLKNRMNAIAPNLTILVGELVGARLISHAGSLMNLAKQPASTVQILGAEK 366
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A1E7FUS5_9STRA (Nop-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUS5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.620e-35
Identity = 71/90 (78.89%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:   19 LKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            +K+AAEVSMGTEI  IDI++I+ALAEQV+++SEYR QL +YL++RM AIAPNLT++VGELVGARLIAHAGSL+NLAKQPASTVQILGAEK
Sbjct:  244 VKEAAEVSMGTEIAEIDIINIQALAEQVLSMSEYRAQLFEYLKNRMNAIAPNLTVLVGELVGARLIAHAGSLMNLAKQPASTVQILGAEK 333
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A7S2LDV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDV0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.680e-35
Identity = 66/90 (73.33%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:   19 LKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            +K+AAEVSMGT+IT +D ++I++LAEQV++++EYR+QL DYL++RM AIAPNLTI++GELVGARLI+H+GSL+NLAKQPASTVQILGAEK
Sbjct:  116 VKEAAEVSMGTDITDLDKINIQSLAEQVLSMTEYRIQLFDYLKNRMNAIAPNLTILLGELVGARLISHSGSLMNLAKQPASTVQILGAEK 205
[Close]
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Match: A0A176WKQ4_MARPO (Nop domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WKQ4_MARPO)

HSP 1 Score: 136 bits (342), Expect = 2.080e-35
Identity = 72/96 (75.00%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 KQMVKDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRMQAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK 288
            +++ ++LKDAA +SMGTE++  D+V+IK+L +QV+ALSEYR QL DYLRSRM AIAPNLT++VGELVGARLIAHAGSLINLAK PASTVQILGAEK
Sbjct:  324 EELEQELKDAAVISMGTEVSEQDMVNIKSLCDQVIALSEYRGQLFDYLRSRMNAIAPNLTVLVGELVGARLIAHAGSLINLAKHPASTVQILGAEK 419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1956.5825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXU6_ECTSI1.140e-4592.71Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1D2T7_CYCTE1.960e-3877.17Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2UY01_9STRA5.090e-3780.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YZD1_9STRA3.200e-3681.11Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6U3FQT3_9CHLO3.370e-3678.26Hypothetical protein n=2 Tax=Mamiellaceae TaxID=41... [more]
A0A7S0IM80_MICPS3.710e-3678.26Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S1YVM4_9STRA1.100e-3578.26Hypothetical protein (Fragment) n=2 Tax=Bacillario... [more]
A0A1E7FUS5_9STRA1.620e-3578.89Nop-domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S2LDV0_9STRA1.680e-3573.33Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A176WKQ4_MARPO2.080e-3575.00Nop domain-containing protein n=2 Tax=Marchantia p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1956contigL-elsbetiae_contig1956:21076..21988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog2880.D7FXU6
Preferred nameNOP58
KEGG koko:K14565
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0015030,GO:0016049,GO:0016070,GO:0016072,GO:0016604,GO:0019899,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033036,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048254,GO:0051117,GO:0051179,GO:0070013,GO:0070761,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1498@1,KOG2572@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Ec32 ortholog descriptionNOP58 subunit of the C/D ribonucleoprotein complex
Ec32 orthologEc-23_001460.1
Exons2
Model size288
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1956.5825.1prot_L-elsbetiae_contig1956.5825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1956 21082..21988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.6870656-UTR-L-elsbetiae_contig1956:21075..210811622815811.6870656-UTR-L-elsbetiae_contig1956:21075..21081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1956 21076..21081 +
1691683118.348029-UTR-L-elsbetiae_contig1956:21075..210811691683118.348029-UTR-L-elsbetiae_contig1956:21075..21081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1956 21076..21081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.698827-CDS-L-elsbetiae_contig1956:21081..211741622815811.698827-CDS-L-elsbetiae_contig1956:21081..21174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 21082..21174 +
1691683118.3595426-CDS-L-elsbetiae_contig1956:21081..211741691683118.3595426-CDS-L-elsbetiae_contig1956:21081..21174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 21082..21174 +
1622815811.7116349-CDS-L-elsbetiae_contig1956:21799..219881622815811.7116349-CDS-L-elsbetiae_contig1956:21799..21988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 21800..21988 +
1691683118.3704655-CDS-L-elsbetiae_contig1956:21799..219881691683118.3704655-CDS-L-elsbetiae_contig1956:21799..21988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1956 21800..21988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1956.5825.1

>prot_L-elsbetiae_contig1956.5825.1 ID=prot_L-elsbetiae_contig1956.5825.1|Name=mRNA_L-elsbetiae_contig1956.5825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MVKDLKDAAEVSMGTEITIIDIVSIKALAEQVVALSEYRLQLSDYLRSRM
QAIAPNLTIMVGELVGARLIAHAGSLINLAKQPASTVQILGAEK
back to top

mRNA from alignment at L-elsbetiae_contig1956:21076..21988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1956.5825.1 ID=mRNA_L-elsbetiae_contig1956.5825.1|Name=mRNA_L-elsbetiae_contig1956.5825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=913bp|location=Sequence derived from alignment at L-elsbetiae_contig1956:21076..21988+ (Laminarionema elsbetiae ELsaHSoW15)
AAACAGATGGTCAAGGACCTGAAGGACGCGGCAGAGGTTAGCATGGGCAC
GGAAATCACTATTATCGACATCGTCAGCATCAAGGCGTTGGCAGAACAGG
TGGGTCGACGGGGGCACGATAGACGTCAGTAATTGTCGAGGAGGGAGGGA
GGGGGCAGCGGTAGTCGGCTCGATGTTAGCCCAGCACCAGACCATGACTT
TCGTGCCTCGAACACTGATGGGGCATATGAAACATATATGCCACTTTTGG
TTGGTTTTGTTTGGGGCGATTGCGAGATACATGGGACATGTTTTTTTTTA
CCGACCAGTCCGCGCCCCCCCCCCCCCCCCCCCTCTATTTTGCGGCAAAC
AAACCCCGCCGGTGCCGCCCGTGGTTCGCTAGACATGTCACCGCGCTTGC
TTGTGGCGCACACTTTCTGCGGAGCCGTGTTGCATGCGACGCTTTTCCGA
AGAGGAAGGGGGAAACCTCCACGACCCCGCGCATCAGCTAGGGCGCGTTG
TGTGCTAATCATGCGCAAGCTCTCAAAACCCTGACACGCTGTTGCGGCCT
TCATTTGTTGCGCTCTGGCCCGCCGTAGTGTGACGTTGAATACAGATTAT
TCTATTCGTTCTACTACGCAGAAACCAATTATATGTTGTGTTTACGTAGA
TACTCACACAATTCCTTCCTTCCGCGGGCTATCTGATCTCATTTACATAC
ATAAAAAACATATGCATGCCGCAGGTCGTGGCGCTGTCGGAGTACCGGTT
GCAGCTGTCCGACTACCTCCGCAGCCGCATGCAGGCCATCGCGCCGAACC
TGACCATTATGGTCGGGGAGCTCGTCGGCGCCAGGCTCATCGCGCACGCG
GGGTCGCTCATCAACCTCGCTAAGCAGCCCGCGTCGACGGTCCAGATCCT
AGGGGCCGAGAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1956:21076..21988+

>mRNA_L-elsbetiae_contig1956.5825.1 ID=mRNA_L-elsbetiae_contig1956.5825.1|Name=mRNA_L-elsbetiae_contig1956.5825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig1956:21076..21988+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAAGGACCTGAAGGACGCGGCAGAGGTTAGCATGGGCACGGAAAT
CACTATTATCGACATCGTCAGCATCAAGGCGTTGGCAGAACAGATGGTCA
AGGACCTGAAGGACGCGGCAGAGGTTAGCATGGGCACGGAAATCACTATT
ATCGACATCGTCAGCATCAAGGCGTTGGCAGAACAGGTCGTGGCGCTGTC
GGAGTACCGGTTGCAGCTGTCCGACTACCTCCGCAGCCGCATGCAGGCCA
TCGCGCCGAACCTGACCATTATGGTCGGGGAGCTCGTCGGCGCCAGGCTC
ATCGCGCACGCGGGGTCGCTCATCAACCTCGCTAAGCAGCCCGCGTCGAC
GGTCCAGATCCTAGGGGCCGAGAAGGTCGTGGCGCTGTCGGAGTACCGGT
TGCAGCTGTCCGACTACCTCCGCAGCCGCATGCAGGCCATCGCGCCGAAC
CTGACCATTATGGTCGGGGAGCTCGTCGGCGCCAGGCTCATCGCGCACGC
GGGGTCGCTCATCAACCTCGCTAAGCAGCCCGCGTCGACGGTCCAGATCC
TAGGGGCCGAGAAG
back to top