mRNA_L-elsbetiae_contig19556.5822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19556.5822.1
Unique NamemRNA_L-elsbetiae_contig19556.5822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19556.5822.1 vs. uniprot
Match: A0A6H5JH87_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH87_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.640e-51
Identity = 177/405 (43.70%), Postives = 198/405 (48.89%), Query Frame = 1 
Query:    1 SPKLVVPRSWDGVVREEE-RXXXXXXXXXXXXXXXXXQRGGPFHGSGSSNRSIDNASFSDSFXXXXXXXXXESSGSIVNKRMFERSAPPAPWGPRGLGLDRAWLAGQAHQALLFGKGGGGYGNDDDDYQAEIRTGGGATGKKAGGPGGFGDVAGAEGRRRG-----------------------GHREADQLKLLDAIVRGVYEVEESCVGEVGADFIAQLLEVSPARRMAALAASEHPFLGPPTKAPPRRRLARAEVAANVAERAERVAGRHKARIQQQRQRTTSAEPPCGVNGNGXXXXXXDD--NPLSDIAQLCAAMSSEARSLVAEVKHWDKTAADA-------------------------------GEEAEAL---EATGRAESAVRRAELLAREARAG 1035
            SPKLVVPRSWDGVVREE  R                                          XXXXX    ESSGSIVNKRMFERSAPPAP G    GLDRAWLAGQAHQALLFGKGG     ++D+YQAE RT      ++  G      +AG+ GR                          GHRE DQLKLL+A+VRG YEVEE CVGEVGADFI+QLL+VSPARRM+A AA+EHPFLGP +K P                                                 XXXXXX      LSDIA L  AMS EARSL+A+ K WDK AADA                               G+ A A    +A G+AE+AV RAELLARE+RAG
Sbjct: 1145 SPKLVVPRSWDGVVREEHVRRSNANNRSRLANGGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSESSGSIVNKRMFERSAPPAPGG----GLDRAWLAGQAHQALLFGKGG-----ENDEYQAERRT------REGHG------IAGSGGRXXXXXXXXGXXXXXXXXXXXXXXXXXGHREQDQLKLLEAVVRGGYEVEEGCVGEVGADFISQLLQVSPARRMSAAAAAEHPFLGPASKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALSDIAVLAGAMSDEARSLLADTKRWDKAAADAAXXXXXXXXXXXXXXXXXXXXXVLPAAPPAAGKVAVAAAMADAVGKAEAAVARAELLARESRAG 1528
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BLAST of mRNA_L-elsbetiae_contig19556.5822.1 vs. uniprot
Match: D8LT50_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT50_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.010e-50
Identity = 167/378 (44.18%), Postives = 187/378 (49.47%), Query Frame = 1 
Query:    1 SPKLVVPRSWDGVVREE--ERXXXXXXXXXXXXXXXXXQRGGPFHGSGSSNRSIDNASFSDSFXXXXXXXXXESSGSIVNKRMFERSAPPAPWGPRGLGLDRAWLAGQAHQALLFGKGGGGYGNDDDDYQAEIRTGGGATGKKAGGPGGFGDVAGAEGRRRGGHREADQLKLLDAIVRGVYEVEESCVGEVGADFIAQLLEVSPARRMAALAASEHPFLGPPTKAPPRRRLARAEVAANVAERAERVAGRHKARIQQQRQRTTSAEPPCGVNGNGXXXXXXDDNPLSDIAQLCAAMSSEARSLVAEVKHWDKTAADA----------------------------GEEAEAL---EATGRAESAVRRAELLAREARAG 1035
            SPKLVVPRSWDGVVRE+   +                X                                  ESSGSIVNKRMFERSAPPAP G    GLDRAWLAGQAHQALLFGKGG     ++D+YQAE RTG G     AG                 GHRE DQLKLL+A+VRG YEVEE CVG V ADFI+QLL V+PARRM+A AA+EHPFLGP +K P R                                               XXXXXX    LSDIA L  AMS EARSL+A+ K WDK AADA                            G+ A A    +A G+AE+AV RAELLA+E+RAG
Sbjct:  522 SPKLVVPRSWDGVVREDYVRKSNANNRSRLANGGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGTLSVSESSGSIVNKRMFERSAPPAPGG----GLDRAWLAGQAHQALLFGKGG-----ENDEYQAERRTGEGHG--IAGXXXXXXXXXXXXXXXXXGHREQDQLKLLEAVVRGGYEVEEGCVGGVVADFISQLLRVTPARRMSAAAAAEHPFLGPASKVP-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALSDIAVLAGAMSDEARSLLADTKRWDKAAADAAAXXXXXXXXXXXXXXXXXXXXXXXXXXGKAAVATAVADAVGKAETAVARAELLAKESRAG 887
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19556.5822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH87_9PHAE5.640e-5143.70Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LT50_ECTSI3.010e-5044.18Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19556contigL-elsbetiae_contig19556:167..2446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCa2 /calmodulin-dependent protein kinase I-like protein
Ec32 orthologEc-08_004250.1
Exons4
Model size1122
Cds size1122
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19556.5822.1prot_L-elsbetiae_contig19556.5822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19556 167..2446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.391859-CDS-L-elsbetiae_contig19556:166..2421622815811.391859-CDS-L-elsbetiae_contig19556:166..242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 167..242 +
1691683118.1436312-CDS-L-elsbetiae_contig19556:166..2421691683118.1436312-CDS-L-elsbetiae_contig19556:166..242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 167..242 +
1622815811.4046147-CDS-L-elsbetiae_contig19556:358..4101622815811.4046147-CDS-L-elsbetiae_contig19556:358..410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 359..410 +
1691683118.152998-CDS-L-elsbetiae_contig19556:358..4101691683118.152998-CDS-L-elsbetiae_contig19556:358..410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 359..410 +
1622815811.467878-CDS-L-elsbetiae_contig19556:465..9251622815811.467878-CDS-L-elsbetiae_contig19556:465..925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 466..925 +
1691683118.161584-CDS-L-elsbetiae_contig19556:465..9251691683118.161584-CDS-L-elsbetiae_contig19556:465..925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 466..925 +
1622815811.4810555-CDS-L-elsbetiae_contig19556:1912..24461622815811.4810555-CDS-L-elsbetiae_contig19556:1912..2446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 1913..2446 +
1691683118.1807327-CDS-L-elsbetiae_contig19556:1912..24461691683118.1807327-CDS-L-elsbetiae_contig19556:1912..2446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19556 1913..2446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19556.5822.1

>prot_L-elsbetiae_contig19556.5822.1 ID=prot_L-elsbetiae_contig19556.5822.1|Name=mRNA_L-elsbetiae_contig19556.5822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
SPKLVVPRSWDGVVREEERRSRAAKRRRNERHRHHRQRGGPFHGSGSSNR
SIDNASFSDSFSASVSVSVSESSGSIVNKRMFERSAPPAPWGPRGLGLDR
AWLAGQAHQALLFGKGGGGYGNDDDDYQAEIRTGGGATGKKAGGPGGFGD
VAGAEGRRRGGHREADQLKLLDAIVRGVYEVEESCVGEVGADFIAQLLEV
SPARRMAALAASEHPFLGPPTKAPPRRRLARAEVAANVAERAERVAGRHK
ARIQQQRQRTTSAEPPCGVNGNGGNGGNGDDNPLSDIAQLCAAMSSEARS
LVAEVKHWDKTAADAGEEAEALEATGRAESAVRRAELLAREARAGGAAAK
AAAAAGARETERAQEAAVAAVAAA
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mRNA from alignment at L-elsbetiae_contig19556:167..2446+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19556.5822.1 ID=mRNA_L-elsbetiae_contig19556.5822.1|Name=mRNA_L-elsbetiae_contig19556.5822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2280bp|location=Sequence derived from alignment at L-elsbetiae_contig19556:167..2446+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCCCAAGCTGGTAGTCCCCCGCTCATGGGACGGCGTGGTGAGGGAGGA
GGAGCGCCGCTCTCGCGCCGCCAAGAGTCACGGTGACGGCAACAACACCG
AAGAATCCGCTGCCGCTGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCCAACGGCGTCTGCAACATCAAGGAAGGCGA
AACGAACGGCATCGACATCATCGGCAACGCGGCGGGCCCTTCCAGTTCCG
TGGGTGGCCCACCACCCGACGGTGGTGCCGTCGCCATCAGCAGCCGCAGC
GGCAGCGGCAGCAGCAACAGGAGCATCGACAACGCCAGCTTCAGCGACAG
CTTCAGCGCCAGCGTCAGCGTCAGCGTCAGCGAGTCGAGCGGGTCGATCG
TGAACAAGAGGATGTTCGAGCGCTCCGCGCCGCCGGCCCCCTGGGGGCCC
CGCGGACTGGGCCTGGACCGCGCGTGGCTCGCCGGGCAGGCGCACCAGGC
GCTGCTCTTCGGCAAGGGTGGAGGCGGGTACGGAAACGACGACGACGACT
ACCAGGCGGAGATCAGGACCGGGGGGGGCGCGACCGGGAAGAAGGCGGGG
GGTCCAGGTGGCTTTGGTGATGTGGCCGGCGCCGAGGGAAGGCGGCGCGG
GGGGCACCGGGAGGCGGACCAGCTGAAGCTGCTGGATGCCATCGTGCGGG
GGGTCTACGAGGTGGAGGAGAGCTGCGTGGGGGAGGTCGGTGCGGACTTC
ATCGCGCAGGTATGATACGCGTTTGTATGATAAGCGTATGTATATATGTA
TGTATGTAGTAGTACTACCTGGTTGTAGGCTGCGTGGTTTTGGAGGAGTG
GGAAGGCAAGGTGAGCATGCGCTCGGTGTGCGGTAGGCCAGTCAAGTCCC
ACTCCTGCTGCAGCAGTATTAGCAGCAGGCTGACGAGAGGCGGCGCCCCC
CCCGCTTGCCCTTGAAACTCACGAAGAGTTGGTTTGTGGGGAGGAGCTCC
GAGGATTGCGTTTGGCCTTGTTTTTGCCGTGCCGTGCGCTTGAAAAAAAA
ATGTTGGTTTTGGCGAGGACCTAGGTACATGTTTTTTTTTTTCTTCAAGC
TTGATCGGGTAGGTTTCGTGGACTCGCTAGTAAAGGGGGGCGTTCGTGCG
TGCGTGGTGCGTAGAACAGCGATAGTGGGAAGGGGGCAGAGGCGGAGGGA
AAGGCGAGCGAGTGTACGTGTGTGTGGGAGAAATGAGAGGGGCGCGTGAA
GCGACCGTATGTGTATGTAGCAGCGTCGGCGAGTGTGTGTTGTGTCGGGA
CGACGAACGAGGCCAAAAAAAGGGTTGTAGTATATGTAGCTGGGACGGAA
CATGACCATATGGCCAGTTAAGTTGGCTAGACGAGCACGAGAAAGCGATG
GCTACCGCTGGTAATTTGCGGTGGCCGCCAGGATGCTACTACAAAGGAGA
GGGGGAGGGGGGGGTTCTGGTGTGCGGCAAGGTTCGATTGTAAAGTCATT
GGGGGGGGGGGGGGGGGAGGGGACCAAGAGCTCCCGGGCGTGGTTTATCG
TGTGCCTCCAGAGCCTCCAGAGCCAGCCCGGGGCAGGTAGCGTCATTGTC
TTCATATCCCGAAAAAGACAGACCGCATGTAGCCAATCGCCACAATTCGA
AAGCAGACAAGCCAACAACTGAGTACGCACGCCCCCTTTTCCCTCACCCC
CCCTCCCCCGCCCCGCCCGGACAACAACCGAATCGCACTGTCGAAGCTGT
TGGAAGTCAGCCCGGCCAGGCGCATGGCCGCGCTGGCCGCCTCCGAGCAC
CCCTTCCTGGGCCCCCCCACCAAAGCCCCTCCACGACGTCGGCTGGCCAG
GGCGGAGGTGGCCGCCAACGTCGCCGAGCGCGCGGAGCGCGTCGCGGGGC
GCCACAAGGCGCGGATCCAGCAGCAAAGGCAGCGCACGACAAGTGCCGAG
CCCCCCTGCGGCGTCAACGGCAACGGCGGCAACGGCGGCAACGGCGACGA
CAACCCTCTCTCCGACATCGCCCAGCTGTGCGCGGCCATGTCTTCCGAGG
CCCGGTCGCTGGTCGCGGAGGTGAAGCACTGGGACAAGACGGCGGCGGAC
GCGGGGGAGGAGGCCGAGGCTCTGGAAGCGACGGGCAGGGCCGAGTCGGC
GGTTCGCCGGGCCGAGCTCCTCGCAAGGGAGGCGCGAGCTGGCGGCGCGG
CGGCGAAGGCGGCGGCGGCAGCGGGCGCGAGGGAGACGGAGCGGGCGCAG
GAAGCGGCGGTGGCGGCGGTGGCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19556:167..2446+

>mRNA_L-elsbetiae_contig19556.5822.1 ID=mRNA_L-elsbetiae_contig19556.5822.1|Name=mRNA_L-elsbetiae_contig19556.5822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig19556:167..2446+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCCCAAGCTGGTAGTCCCCCGCTCATGGGACGGCGTGGTGAGGGAGGA
GGAGCGCCGCTCTCGCGCCGCCAAGAAGCCCCAAGCTGGTAGTCCCCCGC
TCATGGGACGGCGTGGTGAGGGAGGAGGAGCGCCGCTCTCGCGCCGCCAA
GAGAAGGCGAAACGAACGGCATCGACATCATCGGCAACGCGGCGGGCCCT
TCCAGAAGGCGAAACGAACGGCATCGACATCATCGGCAACGCGGCGGGCC
CTTCCACGGCAGCGGCAGCAGCAACAGGAGCATCGACAACGCCAGCTTCA
GCGACAGCTTCAGCGCCAGCGTCAGCGTCAGCGTCAGCGAGTCGAGCGGG
TCGATCGTGAACAAGAGGATGTTCGAGCGCTCCGCGCCGCCGGCCCCCTG
GGGGCCCCGCGGACTGGGCCTGGACCGCGCGTGGCTCGCCGGGCAGGCGC
ACCAGGCGCTGCTCTTCGGCAAGGGTGGAGGCGGGTACGGAAACGACGAC
GACGACTACCAGGCGGAGATCAGGACCGGGGGGGGCGCGACCGGGAAGAA
GGCGGGGGGTCCAGGTGGCTTTGGTGATGTGGCCGGCGCCGAGGGAAGGC
GGCGCGGGGGGCACCGGGAGGCGGACCAGCTGAAGCTGCTGGATGCCATC
GTGCGGGGGGTCTACGAGGTGGAGGAGAGCTGCGTGGGGGAGGTCGGTGC
GGACTTCATCGCGCAGCGGCAGCGGCAGCAGCAACAGGAGCATCGACAAC
GCCAGCTTCAGCGACAGCTTCAGCGCCAGCGTCAGCGTCAGCGTCAGCGA
GTCGAGCGGGTCGATCGTGAACAAGAGGATGTTCGAGCGCTCCGCGCCGC
CGGCCCCCTGGGGGCCCCGCGGACTGGGCCTGGACCGCGCGTGGCTCGCC
GGGCAGGCGCACCAGGCGCTGCTCTTCGGCAAGGGTGGAGGCGGGTACGG
AAACGACGACGACGACTACCAGGCGGAGATCAGGACCGGGGGGGGCGCGA
CCGGGAAGAAGGCGGGGGGTCCAGGTGGCTTTGGTGATGTGGCCGGCGCC
GAGGGAAGGCGGCGCGGGGGGCACCGGGAGGCGGACCAGCTGAAGCTGCT
GGATGCCATCGTGCGGGGGGTCTACGAGGTGGAGGAGAGCTGCGTGGGGG
AGGTCGGTGCGGACTTCATCGCGCAGCTGTTGGAAGTCAGCCCGGCCAGG
CGCATGGCCGCGCTGGCCGCCTCCGAGCACCCCTTCCTGGGCCCCCCCAC
CAAAGCCCCTCCACGACGTCGGCTGGCCAGGGCGGAGGTGGCCGCCAACG
TCGCCGAGCGCGCGGAGCGCGTCGCGGGGCGCCACAAGGCGCGGATCCAG
CAGCAAAGGCAGCGCACGACAAGTGCCGAGCCCCCCTGCGGCGTCAACGG
CAACGGCGGCAACGGCGGCAACGGCGACGACAACCCTCTCTCCGACATCG
CCCAGCTGTGCGCGGCCATGTCTTCCGAGGCCCGGTCGCTGGTCGCGGAG
GTGAAGCACTGGGACAAGACGGCGGCGGACGCGGGGGAGGAGGCCGAGGC
TCTGGAAGCGACGGGCAGGGCCGAGTCGGCGGTTCGCCGGGCCGAGCTCC
TCGCAAGGGAGGCGCGAGCTGGCGGCGCGGCGGCGAAGGCGGCGGCGGCA
GCGGGCGCGAGGGAGACGGAGCGGGCGCAGGAAGCGGCGGTGGCGGCGGT
GGCGGCGGCGCTGTTGGAAGTCAGCCCGGCCAGGCGCATGGCCGCGCTGG
CCGCCTCCGAGCACCCCTTCCTGGGCCCCCCCACCAAAGCCCCTCCACGA
CGTCGGCTGGCCAGGGCGGAGGTGGCCGCCAACGTCGCCGAGCGCGCGGA
GCGCGTCGCGGGGCGCCACAAGGCGCGGATCCAGCAGCAAAGGCAGCGCA
CGACAAGTGCCGAGCCCCCCTGCGGCGTCAACGGCAACGGCGGCAACGGC
GGCAACGGCGACGACAACCCTCTCTCCGACATCGCCCAGCTGTGCGCGGC
CATGTCTTCCGAGGCCCGGTCGCTGGTCGCGGAGGTGAAGCACTGGGACA
AGACGGCGGCGGACGCGGGGGAGGAGGCCGAGGCTCTGGAAGCGACGGGC
AGGGCCGAGTCGGCGGTTCGCCGGGCCGAGCTCCTCGCAAGGGAGGCGCG
AGCTGGCGGCGCGGCGGCGAAGGCGGCGGCGGCAGCGGGCGCGAGGGAGA
CGGAGCGGGCGCAGGAAGCGGCGGTGGCGGCGGTGGCGGCGGCG
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