mRNA_L-elsbetiae_contig19555.5821.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19555.5821.1
Unique NamemRNA_L-elsbetiae_contig19555.5821.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19555.5821.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.430e-35
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 WETDRRDRTALFWAAGGGSVDACMALVEGEGGLRPRDSGGDGSTPLHWAAAGVETRRFGTGGHVNV 198
            WETDRR RTALFWAAGGGSV+AC ALVEGEGGLRP+DSGGDGSTPLHWA AGVETRRFGTGGHVNV
Sbjct:  347 WETDRRGRTALFWAAGGGSVEACKALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNV 412
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BLAST of mRNA_L-elsbetiae_contig19555.5821.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.850e-35
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 WETDRRDRTALFWAAGGGSVDACMALVEGEGGLRPRDSGGDGSTPLHWAAAGVETRRFGTGGHVNV 198
            WETDRR RTALFWAAGGGSV+AC ALVEGEGGLRP+DSGGDGSTPLHWA AGVETRRFGTGGHVNV
Sbjct:  243 WETDRRGRTALFWAAGGGSVEACEALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNV 308
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BLAST of mRNA_L-elsbetiae_contig19555.5821.1 vs. uniprot
Match: B7FSM1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSM1_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 3.600e-7
Identity = 32/69 (46.38%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:    4 ETDRRDRTALFWAAGGGSVDACMALV----EGEGGLRPRDSGGDGSTPLHWAAAGVETRRFGTGGHVNV 198
            E D R  T L WAAG G++     L+    +G      RD     +TPLHWAAAGV  R FGTGG V V
Sbjct:  326 ERDHRGATLLHWAAGVGNLPGVQTLLPHFPQGVRVTTKRDH----ATPLHWAAAGVNAREFGTGGSVKV 390
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BLAST of mRNA_L-elsbetiae_contig19555.5821.1 vs. uniprot
Match: R1CVS8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CVS8_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 1.100e-5
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    4 ETDRRDRTALFWAAGGGSVDACMALVEGEGGLRPRDSGGDGSTPLHWAAAGVETRR-------FGTGGHVN 195
            + DRR  TAL  +AG G    C AL+     L   D   +G+TPLH+A AG+++RR       FGTGGHV+
Sbjct:   61 DRDRRGATALHLSAGHGHDSCCEALLPL---LDVNDHTREGATPLHFAVAGMKSRRGRGGQNGFGTGGHVS 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19555.5821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGD8_ECTSI1.430e-3592.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU03_9PHAE1.850e-3592.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7FSM1_PHATC3.600e-746.38Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
R1CVS8_EMIHU1.100e-543.66Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19555contigL-elsbetiae_contig19555:558..782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.7e-29
Seed eggNOG ortholog2880.D8LGD8
Preferred nameANKRD16
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
EC2.3.1.225
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.2749207-CDS-L-elsbetiae_contig19555:557..7821622815811.2749207-CDS-L-elsbetiae_contig19555:557..782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19555 558..782 -
1691683118.1308026-CDS-L-elsbetiae_contig19555:557..7821691683118.1308026-CDS-L-elsbetiae_contig19555:557..782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19555 558..782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19555.5821.1prot_L-elsbetiae_contig19555.5821.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19555 558..782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19555.5821.1

>prot_L-elsbetiae_contig19555.5821.1 ID=prot_L-elsbetiae_contig19555.5821.1|Name=mRNA_L-elsbetiae_contig19555.5821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
WETDRRDRTALFWAAGGGSVDACMALVEGEGGLRPRDSGGDGSTPLHWAA
AGVETRRFGTGGHVNVRLCLFLCP*
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mRNA from alignment at L-elsbetiae_contig19555:558..782-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19555.5821.1 ID=mRNA_L-elsbetiae_contig19555.5821.1|Name=mRNA_L-elsbetiae_contig19555.5821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=225bp|location=Sequence derived from alignment at L-elsbetiae_contig19555:558..782- (Laminarionema elsbetiae ELsaHSoW15)
TGGGAGACCGACAGACGGGATCGCACGGCGTTGTTCTGGGCTGCTGGTGG
GGGTTCCGTGGATGCGTGCATGGCGTTGGTTGAGGGGGAGGGGGGGCTGC
GGCCGCGAGACTCTGGGGGCGACGGGTCGACACCTCTGCATTGGGCGGCG
GCCGGGGTGGAAACGCGAAGATTCGGCACAGGCGGACACGTGAACGTAAG
ATTGTGTTTGTTTCTCTGCCCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19555:558..782-

>mRNA_L-elsbetiae_contig19555.5821.1 ID=mRNA_L-elsbetiae_contig19555.5821.1|Name=mRNA_L-elsbetiae_contig19555.5821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig19555:558..782- (Laminarionema elsbetiae ELsaHSoW15)
TGGGAGACCGACAGACGGGATCGCACGGCGTTGTTCTGGGCTGCTGGTGG
GGGTTCCGTGGATGCGTGCATGGCGTTGGTTGAGGGGGAGGGGGGGCTGC
GGCCGCGAGACTCTGGGGGCGACGGGTCGACACCTCTGCATTGGGCGGCG
GCCGGGGTGGAAACGCGAAGATTCGGCACAGGCGGACACGTGAACGTAAG
ATTGTGTTTGTTTCTCTGCCCTTGATGGGAGACCGACAGACGGGATCGCA
CGGCGTTGTTCTGGGCTGCTGGTGGGGGTTCCGTGGATGCGTGCATGGCG
TTGGTTGAGGGGGAGGGGGGGCTGCGGCCGCGAGACTCTGGGGGCGACGG
GTCGACACCTCTGCATTGGGCGGCGGCCGGGGTGGAAACGCGAAGATTCG
GCACAGGCGGACACGTGAACGTAAGATTGTGTTTGTTTCTCTGCCCTTGA
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