mRNA_L-elsbetiae_contig1955.5819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1955.5819.1
Unique NamemRNA_L-elsbetiae_contig1955.5819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.620e-39
Identity = 83/184 (45.11%), Postives = 120/184 (65.22%), Query Frame = 1
Query:    4 YSALDWACHRGRVSIIQALLQGGADVNSRNDINCFSALHRAACNDQAESVDALVEAGADMEIKSNFETTPLCVAATEGKPKALLALLQKGATISAQDNEGETPLRLACR-AQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVNDGRTCP--PEEIERVRLLLARAPADRAWRRHGWLAM 546
            YS LD+A  +G   +++A+LQ G DVN R D   +++LH AA N++  ++D LVEAGA +E++ + + TP   A +    +A LAL + GA I A+D  GETPL +A R A R+G+  +V +LLR GADETAL+ DG +   ++G+  +   CP   +++ERVR LL  APADRAWRR G L +
Sbjct:  157 YSVLDFAAQKGDACVLRAILQHGVDVNRRTD--GYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVL 338          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.830e-38
Identity = 81/184 (44.02%), Postives = 118/184 (64.13%), Query Frame = 1
Query:    4 YSALDWACHRGRVSIIQALLQGGADVNSRNDINCFSALHRAACNDQAESVDALVEAGADMEIKSNFETTPLCVAATEGKPKALLALLQKGATISAQDNEGETPLRLACR-AQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVNDGRTCP--PEEIERVRLLLARAPADRAWRRHGWLAM 546
            YS LD A  +G   +++A+LQ G DVN R D   +++LH AA N++  ++D LVEAGA +E++ + + TP   A      +A LAL + G+ I A+D  GETPL +A R A R+G+  +V +LLR GADETAL+ DG +   ++G+  +   CP   +++ERVR LL  AP DRAWRR G+L +
Sbjct:  108 YSVLDLAAQKGDACVLRAILQHGVDVNRRTD--GYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVL 289          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.030e-32
Identity = 77/181 (42.54%), Postives = 107/181 (59.12%), Query Frame = 1
Query:   22 ACHRGRVSIIQALLQGGADVNSRN-DINCFSALHRAACNDQAESVDALVEAGADMEIKS----NFETTPLCVAATEGKPKALLALLQKGATISAQDNEGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVNDGRTCPPEEIERVRLLLARAPADRAWRRHGWLAML 549
            A   G V +I+A L+ G D +S+    + ++ALH+AA ++QAE+V+ L+EAGAD +++S        TPL  AA     +AL  LL+ GA  +  D+ G  PL LA   Q  G+  VV +LLRWGA ETA++  GN+   +   +   R    EE     +LLARAPADRAWRR GW+ ML
Sbjct:  174 ATQLGHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVML 354          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.490e-29
Identity = 78/215 (36.28%), Postives = 106/215 (49.30%), Query Frame = 1
Query:    1 GYSALDWACHRGRVSIIQALLQGGADVNSRND---------------------------INC----FSALHRAACNDQAESVDALVEAGADMEIKSNFETTPLCVAATEGKP-KALLALLQKGATISAQDNEGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVNDGRTCPPEEIERVRLLLARAPADRAWRRHGWLAML 549
            G S L  A  RG +S ++ LL  GADV+ R                             +N     ++ALH     +QA ++D L++AGADM+ K    +TPLCVA   G   +A+  LL++G  +S   ++  T L LAC     G + +V +LLRWG  E  LD  GN+   LL       +    E+ER  +LLA APADRAWRR  WL ML
Sbjct:  204 GLSPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNASKHGYTALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDK--TMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVML 416          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.520e-29
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  211 PLCVAATEGKPKALLALLQKGATISAQDNEGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLG---NVNDGRTCPPEEIERVRLLLARAPADRAWRRHGWLAML 549
            PL  A      KA+  LL  GA+++AQD EG TPL +AC  Q +G+E  V +LLRWGADETAL++ G +  GLL    N ND  TC   EI RVR+LLARAPADRAWRR  WL ML
Sbjct:  309 PLFSATDPRNLKAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVML 424          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.010e-27
Identity = 72/161 (44.72%), Postives = 98/161 (60.87%), Query Frame = 1
Query:   79 VNSRNDINCFSALHRAAC-NDQA-ESVDALVEAGADMEIKSNFETTPLCVAATEGKPKALLALLQKGATISAQ-DNEGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVN-DGRTCPPEEIERVRLLLARAPADRAWRRHGWLAML 549
            V++++   C +ALH A   +D+A  +V  LV+A AD E+KS    TPL  AA   +   + ALLQ  A++  + D  G+TPL  AC  QREG+   + +LLRWGADETA +  G +   +LG    D   C P+E++R RLLL RAP DR WRR GWL +L
Sbjct:  266 VDAQDRAGC-TALHTAILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVL 425          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.820e-27
Identity = 75/175 (42.86%), Postives = 102/175 (58.29%), Query Frame = 1
Query:   22 ACHRGRVSIIQALLQGGADVNSRNDINCFSALHRAACNDQAESVDALVEAGADMEIKSNFETTPLCVAATEGKPKALLALLQKGATISAQDN-EGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLGN-VNDGRTCPPEEIERVRLLLARAPADRAWRRHGWL 540
            A  R  V+II ALL  GADVN           H AA ++ A ++ AL +AG  +E +S    TPL  AA  G  +A+LALLQ GA +++++   G +PL   C A REG      +LLRWGADETA+DSD  ++  ++ + +        + +ERV  LLARAP DRAWRR G+L
Sbjct:   65 AVKRNHVAIINALLAEGADVNFLTTRRPVPLAHIAALHNNAAAMPALFKAGVYIEGRSPKGRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPL---CSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFL 236          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.560e-26
Identity = 65/116 (56.03%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  211 PLCVAATEGKPKALLALLQKGATISAQDNEGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLG---NVNDGRTCPPEEIERVRLLLARAPADRAWRRHGWLAML 549
            PL  A      KA+  LL  GA+++AQD +G TPL LAC  Q  G+E  V +LLRWGADETAL++DG +   LL    N ND  TC   EIERVRLLLARAPAD+A RR  WL ML
Sbjct:  523 PLFSATDPRNLKAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVML 638          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.490e-26
Identity = 68/160 (42.50%), Postives = 105/160 (65.62%), Query Frame = 1
Query:   70 GADVNSRNDINCFSALHRAACNDQAESVDALVEAGADMEIKSNFETTPLCVAATEGKPKALLALLQKGATISAQDNEGETPLRL-ACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVNDGRTCPPEEIERVRLLLARAPADRAWRRHGWLAM 546
            G DVN++ + N  +AL  A+  D+A ++D L EAGA++E ++N  +TPL VA+ EG+  A +ALL+ GA++  ++   +TPL L A +A   G   +V +LLR GADETA+  +G++   ++    +      E+++RVR LLARAPADRAWRR G+L +
Sbjct:  547 GGDVNAKVN-NGITALRVASAFDKAPAIDVLTEAGANIEAQANG-STPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLIL 704          
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.420e-25
Identity = 72/208 (34.62%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    1 GYSALDWACHRGRVSIIQALLQGGADVNSRNDINCFSALHRAACNDQAESVDALVEAGADMEIKSN---FETTPLCVAATEGKPKALLALLQKGATISAQDNEGETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLL------------GNVNDGRTCP----------PEEIERVRLLLARAPADRAWRRHGWLAML 549
            G +A+D A  +G V +I+A+++ G +V +  D    +ALH A     A++VD L++AGAD+  K+       TPL V   +   +A++ALL++G  ++  +  G + L L C +   G++ +V +LLRWGA ETA++ +G +   +L            G       C            +EI+R R+LLARAPADR WRR  WL ML
Sbjct:  243 GMTAMDVAVSKGHVGVIEAIVENGGNVRA-TDTYGLTALHHAR---GAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVML 446          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1955.5819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNU3_9PHAE1.620e-3945.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI2.830e-3844.02Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI2.030e-3242.54Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LBP9_ECTSI3.490e-2936.28Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LS36_ECTSI3.520e-2956.03Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FLL7_ECTSI1.010e-2744.72Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KFY7_9PHAE7.820e-2742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW4_9PHAE1.560e-2656.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY9_9PHAE5.490e-2642.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F4_9PHAE2.420e-2534.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1955contigL-elsbetiae_contig1955:21451..21999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D7G6X8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.1492424-CDS-L-elsbetiae_contig1955:21450..219991622815811.1492424-CDS-L-elsbetiae_contig1955:21450..21999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 21451..21999 -
1691683118.047851-CDS-L-elsbetiae_contig1955:21450..219991691683118.047851-CDS-L-elsbetiae_contig1955:21450..21999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 21451..21999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1955.5819.1prot_L-elsbetiae_contig1955.5819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1955 21451..21999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1955.5819.1

>prot_L-elsbetiae_contig1955.5819.1 ID=prot_L-elsbetiae_contig1955.5819.1|Name=mRNA_L-elsbetiae_contig1955.5819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
GYSALDWACHRGRVSIIQALLQGGADVNSRNDINCFSALHRAACNDQAES
VDALVEAGADMEIKSNFETTPLCVAATEGKPKALLALLQKGATISAQDNE
GETPLRLACRAQREGIEVVVRILLRWGADETALDSDGNSVDGLLGNVNDG
RTCPPEEIERVRLLLARAPADRAWRRHGWLAML
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mRNA from alignment at L-elsbetiae_contig1955:21451..21999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1955.5819.1 ID=mRNA_L-elsbetiae_contig1955.5819.1|Name=mRNA_L-elsbetiae_contig1955.5819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=549bp|location=Sequence derived from alignment at L-elsbetiae_contig1955:21451..21999- (Laminarionema elsbetiae ELsaHSoW15)
GGGTACTCGGCGCTTGACTGGGCTTGTCATCGCGGGCGTGTATCCATCAT ACAAGCTCTTCTTCAGGGTGGGGCAGACGTGAACTCTCGTAATGATATCA ATTGCTTCAGCGCCTTGCACAGGGCTGCTTGTAACGACCAGGCCGAATCG GTCGATGCCCTGGTCGAAGCAGGGGCGGACATGGAGATTAAATCGAACTT TGAGACAACGCCTCTGTGCGTTGCTGCAACAGAGGGCAAGCCCAAAGCCT TGCTCGCTCTCTTGCAGAAAGGAGCAACCATCAGCGCGCAAGATAACGAG GGAGAAACCCCGTTGCGCCTGGCATGCCGTGCACAGCGTGAAGGCATTGA GGTAGTCGTACGCATACTGCTGAGATGGGGTGCGGATGAGACGGCCTTGG ACAGCGATGGTAATTCCGTAGACGGTCTGCTCGGCAATGTGAACGACGGC CGTACATGTCCGCCAGAAGAAATCGAGCGCGTGCGACTACTGCTGGCTCG GGCTCCGGCCGATCGGGCGTGGCGTCGCCACGGCTGGCTAGCGATGCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1955:21451..21999-

>mRNA_L-elsbetiae_contig1955.5819.1 ID=mRNA_L-elsbetiae_contig1955.5819.1|Name=mRNA_L-elsbetiae_contig1955.5819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig1955:21451..21999- (Laminarionema elsbetiae ELsaHSoW15)
GGGTACTCGGCGCTTGACTGGGCTTGTCATCGCGGGCGTGTATCCATCAT
ACAAGCTCTTCTTCAGGGTGGGGCAGACGTGAACTCTCGTAATGATATCA
ATTGCTTCAGCGCCTTGCACAGGGCTGCTTGTAACGACCAGGCCGAATCG
GTCGATGCCCTGGTCGAAGCAGGGGCGGACATGGAGATTAAATCGAACTT
TGAGACAACGCCTCTGTGCGTTGCTGCAACAGAGGGCAAGCCCAAAGCCT
TGCTCGCTCTCTTGCAGAAAGGAGCAACCATCAGCGCGCAAGATAACGAG
GGAGAAACCCCGTTGCGCCTGGCATGCCGTGCACAGCGTGAAGGCATTGA
GGTAGTCGTACGCATACTGCTGAGATGGGGTGCGGATGAGACGGCCTTGG
ACAGCGATGGTAATTCCGTAGACGGTCTGCTCGGCAATGTGAACGACGGC
CGTACATGTCCGCCAGAAGAAATCGAGCGCGTGCGACTACTGCTGGCTCG
GGCTCCGGCCGATCGGGCGTGGCGTCGCCACGGCTGGCTAGCGATGCTTG
GGTACTCGGCGCTTGACTGGGCTTGTCATCGCGGGCGTGTATCCATCATA
CAAGCTCTTCTTCAGGGTGGGGCAGACGTGAACTCTCGTAATGATATCAA
TTGCTTCAGCGCCTTGCACAGGGCTGCTTGTAACGACCAGGCCGAATCGG
TCGATGCCCTGGTCGAAGCAGGGGCGGACATGGAGATTAAATCGAACTTT
GAGACAACGCCTCTGTGCGTTGCTGCAACAGAGGGCAAGCCCAAAGCCTT
GCTCGCTCTCTTGCAGAAAGGAGCAACCATCAGCGCGCAAGATAACGAGG
GAGAAACCCCGTTGCGCCTGGCATGCCGTGCACAGCGTGAAGGCATTGAG
GTAGTCGTACGCATACTGCTGAGATGGGGTGCGGATGAGACGGCCTTGGA
CAGCGATGGTAATTCCGTAGACGGTCTGCTCGGCAATGTGAACGACGGCC
GTACATGTCCGCCAGAAGAAATCGAGCGCGTGCGACTACTGCTGGCTCGG
GCTCCGGCCGATCGGGCGTGGCGTCGCCACGGCTGGCTAGCGATGCTT
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