mRNA_L-elsbetiae_contig1955.5818.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1955.5818.1
Unique NamemRNA_L-elsbetiae_contig1955.5818.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1955.5818.1 vs. uniprot
Match: UPI000B141B39 (ankyrin repeat domain-containing protein n=1 Tax=Xanthomonas euvesicatoria TaxID=456327 RepID=UPI000B141B39)

HSP 1 Score: 53.1 bits (126), Expect = 2.250e-5
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   52 LHEAILGGHEHLAKELIVNGADVEARNSVGRNPLQVASGEGLNAIVSTLLLRGAGKNAVDYDGESALIFASGAYDEAHLAVVETLL 309
            LHEA L GH  + + L+  GA++EAR+ +GR P   A+ +  +A++  L+ R A   A+D DG +AL+ A  A D    A++  LL
Sbjct:    1 LHEAALAGHGDIVEALLSAGANLEARDLLGRTPWLDAARQARSAVLERLVARKADVLAIDGDGRNALMLACAA-DNVSPALIRRLL 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1955.5818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000B141B392.250e-538.37ankyrin repeat domain-containing protein n=1 Tax=X... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1955contigL-elsbetiae_contig1955:20457..22339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_001890.1
Exons2
Model size434
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1955.5818.1prot_L-elsbetiae_contig1955.5818.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1955 20504..22339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.093184-UTR-L-elsbetiae_contig1955:20456..205031622815811.093184-UTR-L-elsbetiae_contig1955:20456..20503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1955 20457..20503 -
1691683118.0146098-UTR-L-elsbetiae_contig1955:20456..205031691683118.0146098-UTR-L-elsbetiae_contig1955:20456..20503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1955 20457..20503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.1044884-CDS-L-elsbetiae_contig1955:20503..205521622815811.1044884-CDS-L-elsbetiae_contig1955:20503..20552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 20504..20552 -
1691683118.0262327-CDS-L-elsbetiae_contig1955:20503..205521691683118.0262327-CDS-L-elsbetiae_contig1955:20503..20552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 20504..20552 -
1622815811.1171417-CDS-L-elsbetiae_contig1955:22001..223391622815811.1171417-CDS-L-elsbetiae_contig1955:22001..22339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 22002..22339 -
1691683118.0366743-CDS-L-elsbetiae_contig1955:22001..223391691683118.0366743-CDS-L-elsbetiae_contig1955:22001..22339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1955 22002..22339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1955.5818.1

>prot_L-elsbetiae_contig1955.5818.1 ID=prot_L-elsbetiae_contig1955.5818.1|Name=mRNA_L-elsbetiae_contig1955.5818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
ASYETPVNQLTTFYTRTLHEAILGGHEHLAKELIVNGADVEARNSVGRNP
LQVASGEGLNAIVSTLLLRGAGKNAVDYDGESALIFASGAYDEAHLAVVE
TLLAAGAEHPLTSAPGTDFTNESSCCGS*
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mRNA from alignment at L-elsbetiae_contig1955:20457..22339-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1955.5818.1 ID=mRNA_L-elsbetiae_contig1955.5818.1|Name=mRNA_L-elsbetiae_contig1955.5818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1883bp|location=Sequence derived from alignment at L-elsbetiae_contig1955:20457..22339- (Laminarionema elsbetiae ELsaHSoW15)
GCGTCATACGAAACGCCTGTCAACCAGCTAACTACCTTCTACACACGAAC
ACTGCACGAAGCAATCCTGGGCGGCCATGAGCATCTTGCGAAGGAGTTGA
TAGTCAACGGGGCCGACGTTGAGGCCCGGAACTCGGTAGGTCGTAATCCT
CTTCAAGTGGCTTCTGGGGAAGGCTTGAACGCGATCGTTTCCACCCTCTT
GCTCAGGGGAGCGGGCAAGAACGCAGTCGATTATGACGGAGAGTCGGCGT
TGATATTCGCGTCTGGTGCTTATGATGAGGCTCACCTGGCGGTCGTGGAG
ACTCTACTGGCCGCTGGTGCCGAACATCCGCTCACCAGGTGGGTACTCGG
CGCTTGACTGGGCTTGTCATCGCGGGCGTGTATCCATCATACAAGCTCTT
CTTCAGGGTGGGGCAGACGTGAACTCTCGTAATGATATCAATTGCTTCAG
CGCCTTGCACAGGGCTGCTTGTAACGACCAGGCCGAATCGGTCGATGCCC
TGGTCGAAGCAGGGGCGGACATGGAGATTAAATCGAACTTTGAGACAACG
CCTCTGTGCGTTGCTGCAACAGAGGGCAAGCCCAAAGCCTTGCTCGCTCT
CTTGCAGAAAGGAGCAACCATCAGCGCGCAAGATAACGAGGGAGAAACCC
CGTTGCGCCTGGCATGCCGTGCACAGCGTGAAGGCATTGAGGTAGTCGTA
CGCATACTGCTGAGATGGGGTGCGGATGAGACGGCCTTGGACAGCGATGG
TAATTCCGTAGACGGTCTGCTCGGCAATGTGAACGACGGCCGTACATGTC
CGCCAGAAGAAATCGAGCGCGTGCGACTACTGCTGGCTCGGGCTCCGGCC
GATCGGGCGTGGCGTCGCCACGGCTGGCTAGCGATGCTTCGTTCACGTGC
TTCGAGGGTCACCGTAAACGCTAACGGCAAAGGGGCTGAAGGTTCTAATG
ATGTTGGTGGTGGAGTGGGTGAAAGTTGCAAGGTGGAGGGGCATGGAGAT
ACCTTCGGCACTAGATCTAGTAATGAAAAGGGCGCGCAGGCCAGTTGCGG
AGTGGGCGGAGGCGGAAACGATTTGCTGGGCGGGATCGGAAGTGAGCTCT
TCGGCGGTGCAGTAGTGCGGCTGGTAGAGCGTAAGCCGGAGGGCGTGTTT
CGCACGGCCTTGAAGTTTCTGTGAGGAAGGGATGACGATGCCGTGTGATG
GTAAGTGTCCCATATGTTTCTTGTGGGTTATCTCAACGCCGTATAGTCCC
ACATGAAATGCATGTTCGGAATGTTGCCAAATGTGTTTGGTTTGCTTCAA
TGATACCGAAACTGAATGGCGGATTTCTTGTGCCCTGCACTCTGGAACGG
CCTCTGTTTCTTATCCAAGATGTGCTAAGTCACGTTGTCGCCCGTATTAT
CGCATCCCGCATTCAAATCCTGTGCCATTTACTTCGTTTTCAGCACCCAG
GGGTTTGTCGGTCTCGGGTGATGCGGTGTATTTCTGTGGGACATAACCGC
TTCCTCCGTGTGAAGAAAGGGTGCCCAAAACAAGTTTTTTGCGATACATC
TTTCCCAAAATGCCATCCCGGAAGCGCAAAGTAGCCCCCCAACTTCCTGC
CAATTTGGGAAAGGGTGCAGCTTCAAAATATTGGGAATTGAAAAGTTTAC
AACAAAGATGTTTATCAGCTTGTTGCTCTTGCCGAATTCCGAAACTGCAA
TATGTGTTATTATAATGTATTTGTGCCCGCCAAAACTTACGAGCAATTTG
CTTGCCCTCGTCCCCTTTTTTGCCTTTGCGTCAGCAGTGCGCCGGGCACG
GACTTCACAAATGAAAGCTCGTGCTGTGGTAGCTGAGGAGACCAAGTGGG
CGGAGTGGCGGTCGCTGGAGCTTTGGTGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1955:20457..22339-

>mRNA_L-elsbetiae_contig1955.5818.1 ID=mRNA_L-elsbetiae_contig1955.5818.1|Name=mRNA_L-elsbetiae_contig1955.5818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig1955:20457..22339- (Laminarionema elsbetiae ELsaHSoW15)
GCGTCATACGAAACGCCTGTCAACCAGCTAACTACCTTCTACACACGAAC
ACTGCACGAAGCAATCCTGGGCGGCCATGAGCATCTTGCGAAGGAGTTGA
TAGTCAACGGGGCCGACGTTGAGGCCCGGAACTCGGTAGGTCGTAATCCT
CTTCAAGTGGCTTCTGGGGAAGGCTTGAACGCGATCGTTTCCACCCTCTT
GCTCAGGGGAGCGGGCAAGAACGCAGTCGATTATGACGGAGAGTCGGCGT
TGATATTCGCGTCTGGTGCTTATGATGAGGCTCACCTGGCGGTCGTGGAG
ACTCTACTGGCCGCTGGTGCCGAACATCCGCTCACCAGGCGTCATACGAA
ACGCCTGTCAACCAGCTAACTACCTTCTACACACGAACACTGCACGAAGC
AATCCTGGGCGGCCATGAGCATCTTGCGAAGGAGTTGATAGTCAACGGGG
CCGACGTTGAGGCCCGGAACTCGGTAGGTCGTAATCCTCTTCAAGTGGCT
TCTGGGGAAGGCTTGAACGCGATCGTTTCCACCCTCTTGCTCAGGGGAGC
GGGCAAGAACGCAGTCGATTATGACGGAGAGTCGGCGTTGATATTCGCGT
CTGGTGCTTATGATGAGGCTCACCTGGCGGTCGTGGAGACTCTACTGGCC
GCTGGTGCCGAACATCCGCTCACCAGTGCGCCGGGCACGGACTTCACAAA
TGAAAGCTCGTGCTGTGGTAGCTGATGCGCCGGGCACGGACTTCACAAAT
GAAAGCTCGTGCTGTGGTAGCTGA
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