mRNA_L-elsbetiae_contig19544.5814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19544.5814.1
Unique NamemRNA_L-elsbetiae_contig19544.5814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: D8LC01_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC01_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.000e-41
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 DSAKNDTPTAS-LEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            DSA+ND PTA+ LEGKVVA YFSASWCGPCRGFTP LVKTYNAVRAAGKEFEVVLIGSDR E DFL YH  MPWLALPFPDR
Sbjct:   13 DSAENDVPTAAALEGKVVAFYFSASWCGPCRGFTPQLVKTYNAVRAAGKEFEVVLIGSDRKEDDFLLYHKEMPWLALPFPDR 94          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: A0A7S0MU66_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MU66_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 7.820e-28
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    4 SAKNDTPTASLE--GKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            S  N     SL+  G  +ALYFSA WCGPCRGFTP+LVKTYNA++AAGK FE+V + SDR+E  F +Y G MPWLALPF  R
Sbjct:  152 SGGNKVSVMSLKEAGTYIALYFSAHWCGPCRGFTPELVKTYNALKAAGKPFEIVFVSSDRDEASFAEYFGTMPWLALPFDKR 233          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: D8M9W9_BLAHO (Thioredoxin domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M9W9_BLAHO)

HSP 1 Score: 103 bits (256), Expect = 1.640e-26
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 SAKNDTPTASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPF 234
            S     PT+ L GKVV LYFSA WC PCR FTP L +TY  ++AAGK+FEVV    DR++RDF +Y G MPWLA+PF
Sbjct:   13 SKNGPVPTSDLAGKVVGLYFSAHWCPPCRMFTPKLRQTYLQLKAAGKDFEVVFCSFDRSQRDFEEYFGTMPWLAVPF 89          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: UPI001455382D (nucleoredoxin-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455382D)

HSP 1 Score: 107 bits (267), Expect = 8.610e-26
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 DSAKNDTPTASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            +++K +  T  L+GKV+ LYFSA WCGPCRGFTP LVK+YN ++  GK  E+V   SDR+E  F++Y   MPWLALPF D+
Sbjct:  160 NNSKEEKKTEELKGKVLGLYFSAHWCGPCRGFTPQLVKSYNKMKEDGKNLEMVFCSSDRDEASFMEYFKEMPWLALPFGDK 240          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: UPI0018D8F543 (nucleoredoxin-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8F543)

HSP 1 Score: 105 bits (262), Expect = 4.450e-25
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   25 TASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            T  ++GKVV LYFSA WCGPCRGFTP LV++YN ++ AGK  E+V   SDR+E  F++Y   MPWLALPF D+
Sbjct:  168 TDDIKGKVVGLYFSAHWCGPCRGFTPKLVESYNKMKEAGKNLEIVFCSSDRDEASFMEYFKEMPWLALPFGDK 240          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: A0A7S1MVB2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MVB2_HEMAN)

HSP 1 Score: 100 bits (248), Expect = 5.250e-25
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   25 TASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPD 240
            TA L+GKVVA+YFSA WC PC+ FTP L++ + A+ AAGK FEVVL+  DR +  F  Y G MPWLA+PF D
Sbjct:   53 TAELQGKVVAIYFSAQWCAPCKAFTPKLIELHGALAAAGKPFEVVLVSLDRGQDAFDAYFGTMPWLAVPFAD 124          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: A0A1V9ZDH5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDH5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.510e-24
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   22 PTASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPF 234
            P ASL GKV+ LYFSA WCGPCR FTP L + YN +++ GK FEVV + +D NE+ F  Y+  MPWLA+P+
Sbjct:  201 PAASLGGKVIGLYFSAHWCGPCRQFTPMLAQFYNTMKSVGKPFEVVFVSADHNEKQFNSYYNEMPWLAIPY 271          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: A0A7S2MEH0_9EUKA (Hypothetical protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MEH0_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 7.540e-24
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   16 DTPTASL-EGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            D   +SL E  VV LYFSA WCGPCRGFTP L + YNA++A G+ FE+V + SDR+E  F +YH  MPWLALP+ +R
Sbjct:  412 DEAISSLKEEAVVGLYFSAHWCGPCRGFTPKLAECYNALQAEGRPFEIVFVSSDRDEAAFAEYHNSMPWLALPYEER 488          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: A0A7S0YPF4_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YPF4_9CRYP)

HSP 1 Score: 102 bits (253), Expect = 8.730e-24
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   28 ASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            A+L GK  A+YFSA WCGPC+GFTP L   Y A++A G +FEVV + +DR+E+ F  Y G MPWLA+PF DR
Sbjct:  174 AALGGKTYAVYFSAHWCGPCKGFTPKLAAAYEALKARGDDFEVVFVSADRSEKAFADYFGTMPWLAVPFDDR 245          
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Match: A0A813KHU8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KHU8_POLGL)

HSP 1 Score: 100 bits (250), Expect = 9.550e-24
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   16 DTPTASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEFEVVLIGSDRNERDFLQYHGGMPWLALPFPDR 243
            + P++SL+  VVA+YFSA WCGPC+ +TP L K Y   RA GK FEVV + SDR++  F +Y G MPW A+P+ DR
Sbjct:   15 EVPSSSLQAGVVAVYFSAHWCGPCQAYTPQLKKVYERARAKGKAFEVVFVSSDRDDASFKEYFGSMPWHAVPYADR 90          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19544.5814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC01_ECTSI1.000e-4186.59Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S0MU66_9CHLO7.820e-2862.20Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
D8M9W9_BLAHO1.640e-2659.74Thioredoxin domain-containing protein n=1 Tax=Blas... [more]
UPI001455382D8.610e-2655.56nucleoredoxin-like n=1 Tax=Asterias rubens TaxID=7... [more]
UPI0018D8F5434.450e-2560.27nucleoredoxin-like n=1 Tax=Patiria miniata TaxID=4... [more]
A0A7S1MVB2_HEMAN5.250e-2559.72Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1V9ZDH5_9STRA5.510e-2457.75Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2MEH0_9EUKA7.540e-2458.44Hypothetical protein n=2 Tax=Haptolina brevifila T... [more]
A0A7S0YPF4_9CRYP8.730e-2458.33Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A813KHU8_POLGL9.550e-2453.95Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19544contigL-elsbetiae_contig19544:1505..2222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue9.2e-34
Seed eggNOG ortholog2880.D8LC01
KEGG koko:K17609
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_003930.1
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.883211-CDS-L-elsbetiae_contig19544:1504..15781622815810.883211-CDS-L-elsbetiae_contig19544:1504..1578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19544 1505..1578 +
1691683117.8963678-CDS-L-elsbetiae_contig19544:1504..15781691683117.8963678-CDS-L-elsbetiae_contig19544:1504..1578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19544 1505..1578 +
1622815810.8934174-CDS-L-elsbetiae_contig19544:2053..22221622815810.8934174-CDS-L-elsbetiae_contig19544:2053..2222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19544 2054..2222 +
1691683117.9126096-CDS-L-elsbetiae_contig19544:2053..22221691683117.9126096-CDS-L-elsbetiae_contig19544:2053..2222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19544 2054..2222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19544.5814.1prot_L-elsbetiae_contig19544.5814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19544 1505..2222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19544.5814.1

>prot_L-elsbetiae_contig19544.5814.1 ID=prot_L-elsbetiae_contig19544.5814.1|Name=mRNA_L-elsbetiae_contig19544.5814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
DSAKNDTPTASLEGKVVALYFSASWCGPCRGFTPDLVKTYNAVRAAGKEF
EVVLIGSDRNERDFLQYHGGMPWLALPFPDR
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mRNA from alignment at L-elsbetiae_contig19544:1505..2222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19544.5814.1 ID=mRNA_L-elsbetiae_contig19544.5814.1|Name=mRNA_L-elsbetiae_contig19544.5814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig19544:1505..2222+ (Laminarionema elsbetiae ELsaHSoW15)
GATTCCGCGAAGAACGATACCCCGACGGCTTCGCTCGAAGGCAAAGTAGT GGCCTTATACTTCAGCGCTAGTTGGTGAGTCGTACAATAGGGAGCTCCAC TACAGGGTCGCGGCTGGTCCTCGTTTTGATTCAAAATTGCTCCAGACATT ACGACATTACCAGCTCTCCATCGATAACTTCAAAAAAACACACGTGCTGT TCTGTTTCGCGTCGTTTGGTGTGCTGACGTATGTTTGGCGTGCATAACTG CCTGCAGCTGGTGATTGATTTCACCCCACGTGATACACGTACATATTCCC TCTACCGTTCCGAGAGAAGCCAGTAAAGCTGTGGCGCTGTTGATAGCAGC ATATACGTTTCATGTTTCGTTGATGATGTCAGGATGTTTCCTGCGGTGTA CTGCAGCAGTTCGTTGCCATGGCCTCGAAATGCCCCCCCTTCGAACTGAC AGATGCTGGTTGCCTCCACTTGTTACACGTGGGTATGTACATATGCACAA ATATATACTGATGCACCTCTGTTTGCGCTTTATCTATACTACCGCTAAGG TGTGGACCATGCCGAGGGTTCACACCGGACCTGGTGAAGACGTACAACGC TGTGCGCGCAGCGGGGAAGGAGTTTGAGGTGGTGCTTATCGGCTCAGACA GGAACGAGCGAGACTTCCTGCAATACCATGGGGGTATGCCGTGGCTAGCT CTTCCTTTCCCCGACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19544:1505..2222+

>mRNA_L-elsbetiae_contig19544.5814.1 ID=mRNA_L-elsbetiae_contig19544.5814.1|Name=mRNA_L-elsbetiae_contig19544.5814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig19544:1505..2222+ (Laminarionema elsbetiae ELsaHSoW15)
GATTCCGCGAAGAACGATACCCCGACGGCTTCGCTCGAAGGCAAAGTAGT
GGCCTTATACTTCAGCGCTAGTTGGATTCCGCGAAGAACGATACCCCGAC
GGCTTCGCTCGAAGGCAAAGTAGTGGCCTTATACTTCAGCGCTAGTTGGT
GTGGACCATGCCGAGGGTTCACACCGGACCTGGTGAAGACGTACAACGCT
GTGCGCGCAGCGGGGAAGGAGTTTGAGGTGGTGCTTATCGGCTCAGACAG
GAACGAGCGAGACTTCCTGCAATACCATGGGGGTATGCCGTGGCTAGCTC
TTCCTTTCCCCGACAGGGTGTGGACCATGCCGAGGGTTCACACCGGACCT
GGTGAAGACGTACAACGCTGTGCGCGCAGCGGGGAAGGAGTTTGAGGTGG
TGCTTATCGGCTCAGACAGGAACGAGCGAGACTTCCTGCAATACCATGGG
GGTATGCCGTGGCTAGCTCTTCCTTTCCCCGACAGG
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