mRNA_L-elsbetiae_contig1954.5812.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1954.5812.1
Unique NamemRNA_L-elsbetiae_contig1954.5812.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1954.5812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1954contigL-elsbetiae_contig1954:6950..11241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size652
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1954.5812.1prot_L-elsbetiae_contig1954.5812.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1954 6950..11241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.5422513-CDS-L-elsbetiae_contig1954:6949..72021622815810.5422513-CDS-L-elsbetiae_contig1954:6949..7202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 6950..7202 -
1691683117.7051167-CDS-L-elsbetiae_contig1954:6949..72021691683117.7051167-CDS-L-elsbetiae_contig1954:6949..7202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 6950..7202 -
1622815810.55457-CDS-L-elsbetiae_contig1954:7561..76661622815810.55457-CDS-L-elsbetiae_contig1954:7561..7666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 7562..7666 -
1691683117.7157378-CDS-L-elsbetiae_contig1954:7561..76661691683117.7157378-CDS-L-elsbetiae_contig1954:7561..7666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 7562..7666 -
1622815810.567292-CDS-L-elsbetiae_contig1954:8066..81571622815810.567292-CDS-L-elsbetiae_contig1954:8066..8157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 8067..8157 -
1691683117.7264402-CDS-L-elsbetiae_contig1954:8066..81571691683117.7264402-CDS-L-elsbetiae_contig1954:8066..8157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 8067..8157 -
1622815810.5773559-CDS-L-elsbetiae_contig1954:9096..91391622815810.5773559-CDS-L-elsbetiae_contig1954:9096..9139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 9097..9139 -
1691683117.737547-CDS-L-elsbetiae_contig1954:9096..91391691683117.737547-CDS-L-elsbetiae_contig1954:9096..9139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 9097..9139 -
1622815810.5880766-CDS-L-elsbetiae_contig1954:10572..106621622815810.5880766-CDS-L-elsbetiae_contig1954:10572..10662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 10573..10662 -
1691683117.7480106-CDS-L-elsbetiae_contig1954:10572..106621691683117.7480106-CDS-L-elsbetiae_contig1954:10572..10662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 10573..10662 -
1622815810.6009243-CDS-L-elsbetiae_contig1954:11172..112411622815810.6009243-CDS-L-elsbetiae_contig1954:11172..11241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 11173..11241 -
1691683117.7567232-CDS-L-elsbetiae_contig1954:11172..112411691683117.7567232-CDS-L-elsbetiae_contig1954:11172..11241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1954 11173..11241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1954.5812.1

>prot_L-elsbetiae_contig1954.5812.1 ID=prot_L-elsbetiae_contig1954.5812.1|Name=mRNA_L-elsbetiae_contig1954.5812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
VIVEECGIEDDTTAVPARGLDEQLGGVSSKHDAGLWSWDDPQGSGGPVLL
LSQALELAGLFMDIMVEGLESSDAPGADGDEGEELADRSITALELLLRAC
ESHDLEFNVAAMDTQGASAGTHGIMVDAIRCHRGYPTLELMAEATVMPSA
EHRPKGNRRFWSSGREGNDPPDQRPPQRHRHRAVRGWWGRQFGRGKGNEE
STDSDGSQRLPPQGGVG
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mRNA from alignment at L-elsbetiae_contig1954:6950..11241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1954.5812.1 ID=mRNA_L-elsbetiae_contig1954.5812.1|Name=mRNA_L-elsbetiae_contig1954.5812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4292bp|location=Sequence derived from alignment at L-elsbetiae_contig1954:6950..11241- (Laminarionema elsbetiae ELsaHSoW15)
GTCATTGTCGAGGAATGCGGTATCGAGGATGATACCACGGCTGTACCTGC
ACGGGGCTTGGACGAGCAGGTGAGAGTGTATGCTTGGTGCGAAACGGATG
ACAGGCGGCACGCGAGCCCGCTCCTCGAGCAAGGAGGGGAATCGAGACGT
CAAAACTCCCTGTGACCCGATCTGAAGAGCCCAGGGCCAAGTAGGGGAGG
AGGGAAATATACAGTTACATTTTATCTATTTCTCCGAGAACGGAACCTCA
ACGTCGAGGGAGAGCGGCGAGGCGCAGCGTAAAGCCCGCGCAAGGCTTTC
GGAGTACACGGCGTTGGTTTGGGCACATCGAACGTACCTTAAGTCGGATT
TTGTTTTTTCCTCCCATTAGACTATTGGCTTATTCATCGTCTGCCCCACT
GGCCTCCTTCCTCCACTACGACTAGCCAGACGATCCGACCGGGGTGGGTG
TATTGCCCCGAGGCTATAATATATATGTCTCCCTCCTGTACACTCTCACA
TACACTCGACAACGCATCGCCACCTTGCTACCTTTTCGTGCATTCTCTTT
CCCTCGGCCCTCACCTTGGATGCGAGAAGCTTGGGGGTGTCAGCTCCAAG
CACGATGCCGGACTTTGGAGCTGGGATGACCCTCAGGGATCAGGGGGCCC
CGTGCTGTTGCTCAGCCAGGTATGTTTCAACTACTGCTGGCGGGGTTCGA
GGTCTTTGTCTAACACCCGACGAGTTGCAGGGAGGCCCGTATCGCTGTTT
TTTTAGCAATTTTTGTTCACAAACATCGAACATGCGGGACCCCCGCTAGG
CCCGCTTAGGTATGGGGCTGGGCATCATTCCACGAGAACTCCGGCTGTGG
TTTCGATCCAGAATTATTCCAACCTTCAAAATACTCAGTTTTGGATTCTT
CTACAGGCCGGTACCATAAGGGTTTTTGAGGAGAACTGTCGATGAAGAGC
AGAGCACTAAAGGTCAGTTTGGAAGGGGTTGGACGATTTTAGCTCAACGT
CTTTGGAGGTAGATTTATAGTGTGATTTCTCGCAAGAGAAACTTGCTGGT
GTGACACCTTGGCTGGCGATCCAAAATTGCAACCTTGAGCGATGCTACAC
GTACAATCGGTGGCACTGAAGAACCTCAGCATCAAAATATCCAAATTATA
TGTAAGAACAATACGTGCTCAAATCCGACGTGCCAAAATCGCTAGAACCC
GTGGCAAATAGGAACACGATCACCTTCGCAATTTACTCAAGGGCCCCAAG
AACACCATTTCTCCCCATCATACGGCCATGTAGGAGGCCTCAATTTCGAC
TGCGGTAGTACGAGATCCCCGGCAAATGCGAAAAATACGGGCCGTCAGGA
TGATCATTACGGTAATTCCTCTGTTCAAATACCCCCCGAAAAACACTATT
TCTTGGCGCACAAACACTTTTAGAGATATCCCCGGGCATGCTTTGACGCG
TTCGCACCCAACACCCCGTTGGTGATATTATCATATTTCCACGAGAAGCA
ATTATTCCGGGGAGGGCATTGACGAGACGACACGACCGTGAAGCACAATC
AAGGAGGATCGAAGTCAGGGACGAAAATCCCCAAGAAGATTAAGAGCATT
TGTGTTGCAAGTTTTCGGCTCTTGCAACTTGTACAAAACATGTATTCGAC
CTGCACAGACACGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTCACATTAGAAACCGTTCCG
ATCTCTCTGTGTATCCAGTACCTTCATCTGTCTAGGCTAGCACGTTAAGT
ACGTGTAGGTAGTGGTAGTTAAAAGAAGAACAAGAACCCGTGCCTAAGCG
GGATATTTCCTGGCCGAAACAAATTTGGCAACTGCGAACACGTACTCGGG
TTGGGCGGCCAATAAGCCGCGAGCTTCGGGCAATTAAGAGGCTACTTCCG
GAACTTCCGCCGACAGGTAGACGACATCTCCGGTTTCATCTCCTCTTCCC
GCTAGAAGATTATGTACCGTAGCTCGTTTGAGACTCCTTGCCATAGTGTT
GTTGACACGCAACAAAAATTCACTGACTGGTGTTGTGCGGCTTGTTTCCC
AGGCACTGGAGCTAGCGGGCCTTTTTATGGACATCATGGTCGAAGGTAAG
TTAGACTTGTTTTAACCCCCACGCTGGTCCCTTTTGGATGGGACAGCAAA
AGTATTGAAGGCTCAAAGCACAAACATTTGTTTCCCTTCTACGTTTCTCG
TCCACTTTGACATATATATCTATGCCATAAATGCACCTTTCTATTTTCAT
AATGCACACATACATACATACCTCATCTGACCCATGAGTTAGCTTGATTA
TGGCGCAGAACATATATTTTGACCCAAATGGTTTGCGATACTGTAGATAG
GCCCATTTCAAAGATAAAGTCACGGGGATGCTCATGAAAAAAAAAGCAAA
ATGGTATTAGTGAGAATCTGTGGGTCAATTTCTTCGACCAAATTAAGGCC
TATTTCGGTCAATCCTTACACTTTTCGGCCTGAGACGAATTTTGCTTGTT
TCGATGAGAAACAAATTTACAACATGACGATTTGCTTTCAAACTAGGCGT
GGGTACTGCCCAAAAGCATCCAATCGGAAACAAAAATCGAACTTGGCACT
TTTGAGCGTTTTTTTTTGTCATTTTCCAGATTTTCATTTTTCTTTTGTAT
TCTAGAAAAAGTGCAGAAAAGGGTCTGTTTTGGGCCTCGACTGGATTTTA
TTCGGCCGCTGGTATGTGCAGGAGGCTGCAAAAAAAAAAAAAAAAAAACG
GTTTTGAACTCAAAAAACGACGAGGGTTTCAAAAATTCCATCACTTTTGT
CATCGGACACGGCTACGGGCCCGTGTAAACGCAATCAACCTGACTATGTG
TCAGAGGAAGTACATACACATTTTCTCTCCGAAACTTTTACCCTTCGAGC
AAACTAGCCCGCAGAAATATACCTTTTTGTGGCCTTACTTAAAGCGCGAC
AGCACCACACATGAGATCGAGCGCCAACATGTGGAAGTTTTTGCTACTTC
TCTCTTGATGCACCGTTGCAAACCACCTTTCAAGGGCTCGAATCTTCCGA
CGCACCCGGCGCTGATGGAGATGAGGGCGAAGAGCTGGCGGACAGGTCCA
TCACCGCCCTGGAACTACTACTCAGGTCGGGGTCTTCTCTACTCAGCCAA
CGCATGCATCGAGACTATCTACTCCCTTCCATACAAATCATATATAGATG
GTTATGCTCGTTGGTACACTTCTCGCATCGTGACTGACTAACCTGGAAAA
CAGAGTCGTGGAGAAAATGAAGTCCCGATGCGATGTGGAAGCGATACTCT
TGGTAGCAGAATACAGAGATTTCTGCGCTACGACGACGCCACCAAGAGTG
GCGTGTGGTCCCGGTGTGCTTTTTGTCGCCCAAGCCGTTTTCGCGCCGGC
GGCTTCTCCACAGACAAATCAACCCAATTGAAATGGACCTCGGCAGTTGC
ACTACAACACGGGATTGAAATTGTGTGGTACATTTGTCCGCTGTTCTTTC
CATGCACGACAAATGTGGATTCCAGAGCCTGTGAGAGCCACGACTTGGAG
TTTAATGTGGCCGCCATGGACACACAAGGGGCCTCGGCGGGAACGCACGG
CATCATGGTCGACGCCATACGCTGCCACAGGTTAGTGAGGCTGGGTGGAA
GGGGCTCGGCGTTAAGAGGATATATCCCACACCCAGTTGTTCATTCCTTT
CCGGTACAAGTCGAACACACCTTTTATCGGGCAACCAAGCAGACGCCCTG
TCAACGTCGATTGGTTGCTCCGGTTGGTGGGAGCATGACCGGCAACGGCT
TGGAGACTGCTGCTCCACCCATGCACACACCTCGCACGTGTACAGGAACT
CGAGCGCAGAACGCTTAAACGACTGGTGATCCTTCGCAGCAGCAAAACTG
CGTGGTCACCGTTGTCCCGGAAGGAAAAGGGTAGGCAGCAAGTGTTGACT
CTCGTCCCATACGCGCACATACATGTGAATATCAAACAGGGGCTACCCTA
CCCTGGAGCTGATGGCAGAAGCGACGGTGATGCCGAGCGCGGAGCATCGG
CCCAAAGGCAACAGAAGATTTTGGAGTAGCGGCAGAGAGGGGAATGATCC
GCCAGACCAGCGGCCGCCACAGCGACATCGACACCGTGCTGTTCGCGGTT
GGTGGGGCCGCCAGTTCGGCCGCGGAAAAGGCAACGAAGAGTCCACGGAC
AGCGACGGAAGCCAGCGGCTTCCACCCCAAGGTGGCGTTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1954:6950..11241-

>mRNA_L-elsbetiae_contig1954.5812.1 ID=mRNA_L-elsbetiae_contig1954.5812.1|Name=mRNA_L-elsbetiae_contig1954.5812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig1954:6950..11241- (Laminarionema elsbetiae ELsaHSoW15)
GTCATTGTCGAGGAATGCGGTATCGAGGATGATACCACGGCTGTACCTGC
ACGGGGCTTGGACGAGCAGGTCATTGTCGAGGAATGCGGTATCGAGGATG
ATACCACGGCTGTACCTGCACGGGGCTTGGACGAGCAGCTTGGGGGTGTC
AGCTCCAAGCACGATGCCGGACTTTGGAGCTGGGATGACCCTCAGGGATC
AGGGGGCCCCGTGCTGTTGCTCAGCCAGCTTGGGGGTGTCAGCTCCAAGC
ACGATGCCGGACTTTGGAGCTGGGATGACCCTCAGGGATCAGGGGGCCCC
GTGCTGTTGCTCAGCCAGGCACTGGAGCTAGCGGGCCTTTTTATGGACAT
CATGGTCGAAGGCACTGGAGCTAGCGGGCCTTTTTATGGACATCATGGTC
GAAGGGCTCGAATCTTCCGACGCACCCGGCGCTGATGGAGATGAGGGCGA
AGAGCTGGCGGACAGGTCCATCACCGCCCTGGAACTACTACTCAGGGCTC
GAATCTTCCGACGCACCCGGCGCTGATGGAGATGAGGGCGAAGAGCTGGC
GGACAGGTCCATCACCGCCCTGGAACTACTACTCAGAGCCTGTGAGAGCC
ACGACTTGGAGTTTAATGTGGCCGCCATGGACACACAAGGGGCCTCGGCG
GGAACGCACGGCATCATGGTCGACGCCATACGCTGCCACAGAGCCTGTGA
GAGCCACGACTTGGAGTTTAATGTGGCCGCCATGGACACACAAGGGGCCT
CGGCGGGAACGCACGGCATCATGGTCGACGCCATACGCTGCCACAGGGGC
TACCCTACCCTGGAGCTGATGGCAGAAGCGACGGTGATGCCGAGCGCGGA
GCATCGGCCCAAAGGCAACAGAAGATTTTGGAGTAGCGGCAGAGAGGGGA
ATGATCCGCCAGACCAGCGGCCGCCACAGCGACATCGACACCGTGCTGTT
CGCGGTTGGTGGGGCCGCCAGTTCGGCCGCGGAAAAGGCAACGAAGAGTC
CACGGACAGCGACGGAAGCCAGCGGCTTCCACCCCAAGGTGGCGTTGGGG
GGCTACCCTACCCTGGAGCTGATGGCAGAAGCGACGGTGATGCCGAGCGC
GGAGCATCGGCCCAAAGGCAACAGAAGATTTTGGAGTAGCGGCAGAGAGG
GGAATGATCCGCCAGACCAGCGGCCGCCACAGCGACATCGACACCGTGCT
GTTCGCGGTTGGTGGGGCCGCCAGTTCGGCCGCGGAAAAGGCAACGAAGA
GTCCACGGACAGCGACGGAAGCCAGCGGCTTCCACCCCAAGGTGGCGTTG
GG
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